genome.fa.s8082.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008082.1 Hibiscus syriacus cultivar Beakdansim tig00110584_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6025995

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   

This is table  6  of  28  ( 3312 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1089132--1089198	21	3.1	21	70	8	62	31	20	19	28	1.97
1089132--1089239	21	5.0	21	65	16	58	29	19	20	30	1.97
1101872--1101916	14	3.2	14	80	0	54	51	17	0	31	1.46
1101876--1101918	20	2.2	20	86	0	59	51	16	0	32	1.45
1101872--1101922	24	2.1	24	92	0	84	50	15	0	33	1.44
1103244--1103295	16	2.8	20	75	18	60	36	3	17	42	1.67
1103591--1103651	21	3.0	20	77	15	72	57	0	0	42	0.98
1103600--1103651	19	2.6	21	87	6	81	55	0	0	44	0.99
1107240--1107277	6	6.3	6	100	0	76	31	52	15	0	1.43
1107632--1107864	121	1.9	120	92	2	396	24	20	25	29	1.99
1107876--1107930	5	11.4	5	88	1	60	3	41	25	29	1.72
1107880--1107930	25	2.1	24	96	3	93	3	41	25	29	1.73
1107924--1108022	5	19.8	5	97	0	153	14	40	40	5	1.67
1108023--1108047	6	4.2	6	100	0	50	0	16	48	36	1.46
1113870--1113913	5	8.8	5	89	0	61	6	38	38	15	1.75
1113911--1113977	6	11.2	6	96	0	98	5	16	49	28	1.69
1114252--1114306	22	2.5	22	75	0	56	29	9	23	38	1.85
1114788--1114828	5	8.4	5	91	2	66	0	39	21	39	1.54
1114821--1114867	20	2.2	23	85	11	64	2	23	42	31	1.66
1117991--1118073	33	2.5	34	98	2	159	40	0	0	59	0.98
1123429--1123509	29	2.8	29	84	1	117	27	20	7	44	1.78
1127974--1128026	20	2.7	20	85	11	74	69	5	3	20	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1127992--1128209	102	2.1	102	86	3	305	50	5	4	39	1.43
1128163--1128195	15	2.1	17	88	11	52	42	6	0	51	1.26
1129390--1129503	29	3.9	29	95	2	194	15	38	26	19	1.92
1129526--1129590	31	2.1	31	97	0	121	3	27	32	36	1.72
1129753--1129823	29	2.4	29	95	0	133	21	26	35	16	1.95
1129817--1129841	12	2.1	12	100	0	50	16	0	60	24	1.36
1129881--1129948	35	1.9	35	100	0	136	29	29	14	26	1.95
1130386--1130429	21	2.1	21	86	0	61	29	0	18	52	1.46
1130832--1130858	14	1.9	14	100	0	54	7	3	14	74	1.18
1130829--1130861	17	1.9	17	88	11	50	9	3	15	72	1.21
1134165--1134580	26	16.7	26	76	11	352	43	2	10	43	1.51
1134107--1134580	124	3.8	124	99	0	930	43	2	10	43	1.50
1134162--1134505	150	2.3	145	83	11	412	44	2	10	43	1.52
1134589--1134662	38	1.9	38	83	5	96	45	4	5	44	1.45
1137028--1137058	15	2.1	14	94	5	53	54	6	0	38	1.26
1137033--1137079	16	3.0	16	84	9	53	59	10	0	29	1.31
1137539--1137591	21	2.5	21	93	0	88	3	33	0	62	1.13
1137562--1137593	17	1.9	16	93	6	55	3	34	0	62	1.11
1137654--1137705	25	2.1	25	100	0	104	26	34	11	26	1.91
1137884--1137992	29	3.8	29	87	2	157	20	31	32	16	1.95
1138014--1138039	13	2.0	13	100	0	52	15	38	30	15	1.88
1138606--1138849	93	2.6	93	87	3	314	23	28	5	41	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1143899--1144014	57	2.0	57	91	0	187	32	12	20	33	1.91
1146221--1146294	21	3.5	21	92	0	121	28	27	20	24	1.99
1147566--1147605	16	2.5	16	100	0	80	62	0	37	0	0.95
1147550--1147605	3	17.7	3	82	10	67	62	0	37	0	0.95
1147556--1147604	13	3.8	13	89	8	73	63	0	36	0	0.95
1147550--1147605	13	4.4	12	86	6	67	62	0	37	0	0.95
1149815--1149856	18	2.5	16	85	11	57	19	16	23	40	1.91
1154608--1154668	21	2.9	21	73	4	59	14	24	32	27	1.95
1163530--1163711	59	3.1	59	82	5	217	39	3	23	34	1.73
1163572--1163662	31	3.0	31	66	19	84	40	5	23	30	1.77
1169786--1170065	147	1.9	147	85	4	386	33	13	22	30	1.93
1170974--1171006	2	16.5	2	100	0	66	51	0	0	48	1.00
1171440--1171494	28	2.0	28	85	0	65	49	10	7	32	1.65
1171457--1171555	50	2.0	49	86	3	137	53	8	9	29	1.61
1171506--1171616	29	3.8	29	82	4	109	49	9	8	33	1.64
1175369--1175395	2	13.5	2	100	0	54	48	0	0	51	1.00
1180064--1180125	31	2.0	32	93	3	108	46	17	6	29	1.73
1181363--1181424	24	2.6	24	86	0	88	12	11	22	53	1.71
1182934--1183008	10	7.7	10	68	21	52	9	10	21	58	1.59
1182940--1183004	16	4.1	16	91	0	112	7	10	23	58	1.57
1183074--1183105	16	2.0	16	100	0	64	6	12	25	56	1.59
1184893--1184952	29	2.0	31	90	6	97	36	6	15	41	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1200557--1200583	10	2.7	10	100	0	54	92	0	7	0	0.38
1209188--1209266	28	2.8	28	77	7	79	48	2	13	35	1.57
1220136--1220168	16	2.1	16	100	0	66	39	30	0	30	1.57
1222256--1222320	28	2.3	28	97	0	121	40	1	3	55	1.25
1224197--1224271	3	25.7	3	94	5	136	66	0	0	33	0.92
1224513--1224543	16	1.9	16	93	0	53	54	22	16	6	1.64
1224605--1224651	16	3.1	16	88	11	73	59	17	10	12	1.60
1228816--1228856	3	14.0	3	94	5	75	65	0	0	34	0.93
1240331--1240379	23	2.2	23	82	7	57	44	2	4	48	1.33
1240331--1240406	22	3.4	23	77	10	70	46	1	2	50	1.24
1242481--1242523	20	2.3	19	80	11	52	27	25	4	41	1.75
1242486--1242523	20	1.9	20	88	0	58	28	23	5	42	1.76
1251124--1251175	20	2.6	20	90	0	86	9	21	23	46	1.80
1251167--1251256	41	2.2	41	93	0	153	18	17	22	41	1.91
1251167--1251238	22	3.4	22	67	11	69	18	18	23	40	1.91
1251188--1251256	19	3.5	19	73	11	66	18	18	20	42	1.90
1252017--1252078	21	3.0	21	76	2	72	37	25	19	17	1.94
1253686--1253738	18	2.9	18	100	0	106	28	0	9	62	1.26
1254540--1254582	14	3.0	14	82	3	50	44	0	0	55	0.99
1255413--1255451	18	2.2	18	86	9	53	38	7	7	46	1.61
1256350--1256445	41	2.4	41	96	1	176	43	33	12	10	1.77
1257548--1257626	35	2.3	35	100	0	158	26	34	20	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1257613--1257670	26	2.2	26	100	0	116	18	39	24	17	1.92
1257602--1257819	67	3.0	67	83	15	276	21	37	22	19	1.95
1257680--1257845	26	6.2	26	75	22	134	20	36	23	19	1.95
1257597--1257909	92	3.5	97	76	19	388	20	36	22	19	1.95
1257560--1257913	175	2.0	176	97	1	676	20	35	23	20	1.96
1257855--1257909	25	2.2	26	96	3	103	20	36	25	18	1.94
1257777--1257909	66	2.0	67	98	1	259	21	38	22	18	1.93
1257932--1258039	29	3.8	29	92	4	175	14	30	32	22	1.94
1258040--1258071	13	2.5	13	94	0	55	18	46	3	31	1.65
1258251--1258302	25	2.1	25	92	0	86	28	9	32	28	1.89
1258365--1258415	21	2.5	20	90	6	77	62	0	35	1	1.06
1258578--1258688	44	2.6	40	75	17	100	41	0	10	47	1.38
1261054--1261112	26	2.3	24	78	16	64	40	3	8	47	1.51
1261916--1261994	27	2.9	28	85	7	101	53	13	0	32	1.41
1262417--1262564	33	4.4	34	85	11	191	16	52	8	21	1.71
1262444--1262556	15	7.1	15	71	16	93	16	53	7	21	1.68
1262439--1262569	64	2.0	66	94	4	230	16	51	9	22	1.72
1262443--1262556	17	7.1	16	73	13	108	16	54	7	21	1.67
1262602--1262690	29	3.1	29	98	0	169	17	35	31	14	1.91
1267003--1267040	12	3.1	12	85	7	58	39	26	0	34	1.57
1267001--1267036	13	2.8	13	87	4	56	33	27	0	38	1.57
1270643--1270706	26	2.3	26	86	7	92	42	4	1	51	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1272736--1272762	13	2.1	13	100	0	54	44	14	0	40	1.46
1273459--1273495	19	2.1	18	85	14	51	35	13	10	40	1.80
1280712--1280772	23	2.7	23	81	0	77	32	24	22	19	1.97
1282359--1282495	64	2.2	63	81	6	152	25	24	17	32	1.97
1282621--1282663	20	2.0	22	86	8	63	39	23	0	37	1.55
1288134--1288206	32	2.3	32	88	2	103	26	5	10	57	1.54
1289039--1289081	20	2.2	20	91	0	68	37	20	18	23	1.94
1289075--1289121	20	2.3	20	89	7	69	38	27	17	17	1.91
1289087--1289125	20	2.0	20	100	0	78	35	25	20	17	1.95
1289089--1289142	20	2.7	20	88	5	74	33	27	16	22	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28