genome.fa.s8082.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008082.1 Hibiscus syriacus cultivar Beakdansim tig00110584_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6025995

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   

This is table  5  of  28  ( 3312 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
879060--879227	53	3.2	53	96	0	309	36	8	16	38	1.80
879957--879989	2	16.5	2	100	0	66	48	0	0	51	1.00
884610--884700	22	4.0	22	79	10	110	50	16	1	31	1.52
884614--884696	26	3.4	25	65	13	64	51	16	1	30	1.52
884636--884709	22	3.2	22	70	16	60	55	17	0	27	1.42
884680--885179	32	17.2	32	75	22	461	52	12	0	34	1.41
884600--885141	166	3.3	163	92	4	806	52	13	0	33	1.44
884778--884826	22	2.2	22	85	3	62	55	12	0	32	1.37
884832--884906	22	3.2	23	75	17	82	54	17	0	28	1.43
884942--884984	22	2.0	22	100	0	86	51	13	0	34	1.42
884945--884993	22	2.2	22	85	7	64	55	14	2	28	1.51
884632--885156	198	2.6	194	85	9	638	52	13	0	33	1.42
885048--885105	18	3.4	18	70	18	61	56	13	0	29	1.38
885000--885073	22	3.2	22	70	16	60	55	17	0	27	1.42
885127--885156	15	2.0	15	93	0	51	50	0	0	50	1.00
886154--886700	277	2.0	276	90	2	857	35	10	17	36	1.85
893596--893762	81	2.1	81	100	0	334	13	28	13	44	1.81
896551--896746	99	2.0	99	100	0	392	30	7	28	33	1.84
898780--898818	2	19.5	2	100	0	78	51	0	0	48	1.00
898957--899143	93	2.0	93	100	0	374	29	31	12	25	1.93
900544--900603	6	10.2	6	92	3	86	30	48	16	5	1.67
900601--900644	5	8.8	5	94	0	61	13	38	40	6	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
906599--906659	6	10.2	6	96	0	104	31	49	16	3	1.62
906657--906705	5	9.8	5	93	0	62	16	36	40	6	1.73
907453--907634	82	2.2	83	77	5	192	35	19	16	29	1.93
907758--907838	41	2.0	41	82	0	99	23	18	23	34	1.96
907986--908076	32	2.9	32	95	1	157	13	35	12	39	1.81
908589--908867	41	6.8	41	82	5	330	27	21	18	32	1.97
908589--908867	83	3.4	82	89	4	384	27	21	18	32	1.97
912104--912390	43	6.7	43	83	7	298	21	22	22	33	1.98
912104--912370	128	2.1	130	84	6	348	21	22	22	32	1.98
912104--912370	86	3.1	85	83	6	333	21	22	22	32	1.98
914128--914208	3	26.7	3	83	7	56	45	0	0	54	0.99
914129--914183	21	2.6	21	94	0	101	47	0	0	52	1.00
914126--914202	18	3.8	20	82	17	90	45	0	0	54	0.99
918680--918883	42	4.7	43	73	10	166	29	21	17	31	1.96
918680--918882	41	4.7	45	74	11	149	30	21	17	31	1.96
918680--918874	89	2.2	88	84	4	263	30	20	17	31	1.96
923157--924689	762	2.0	762	98	0	2976	30	22	13	33	1.93
932379--932412	17	1.9	18	88	5	52	38	0	0	61	0.96
934887--934959	20	3.6	21	78	12	73	36	20	16	26	1.93
935488--935526	20	2.0	20	84	0	51	53	17	7	20	1.68
935536--935586	20	2.5	20	80	0	57	17	11	19	50	1.76
937079--937173	42	2.3	42	88	0	136	29	36	15	17	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
937526--937575	21	2.4	21	89	0	73	24	38	18	20	1.93
939388--939423	18	2.0	18	94	0	63	19	2	22	55	1.56
941685--941738	24	2.2	24	93	0	90	42	18	16	22	1.89
941701--941752	24	2.2	24	82	0	59	38	19	17	25	1.93
951124--951155	6	5.7	6	89	10	50	90	9	0	0	0.45
951124--951157	11	3.2	11	91	4	52	91	8	0	0	0.43
951115--951166	17	2.9	17	81	18	61	86	5	5	1	0.76
952456--953393	51	17.8	51	84	6	926	31	18	25	24	1.98
952453--953289	264	3.2	262	85	6	1106	31	18	26	23	1.98
952453--953289	315	2.6	315	89	3	1220	31	18	26	23	1.98
953081--953485	55	7.5	54	82	7	257	32	17	21	28	1.96
953467--953528	32	1.9	32	93	0	106	27	14	29	29	1.95
955928--956014	20	4.5	19	76	15	79	37	12	22	26	1.90
955948--956025	40	2.0	40	84	0	102	38	12	20	28	1.89
955947--956037	40	2.3	40	80	0	101	38	12	19	29	1.88
956027--956075	20	2.5	19	83	9	62	38	10	24	26	1.87
966577--966604	14	2.0	14	100	0	56	28	7	21	42	1.79
967311--967366	24	2.3	24	100	0	112	23	12	41	23	1.88
970726--970967	119	2.0	119	99	0	475	29	31	11	27	1.91
971048--971207	80	2.0	80	93	0	275	48	8	7	35	1.63
974742--974783	15	2.8	15	78	10	50	54	0	0	45	0.99
974832--974882	24	2.2	24	89	3	77	41	7	5	45	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
974868--975038	2	85.0	2	71	16	86	52	2	4	39	1.37
974842--974915	24	3.0	25	84	11	82	47	4	2	45	1.35
974942--975058	47	2.5	44	75	11	110	50	3	6	39	1.46
974958--975074	53	2.2	52	81	7	128	50	2	6	40	1.43
974976--975065	26	3.4	25	74	17	76	48	3	6	41	1.46
975079--975119	15	2.8	15	96	3	75	31	7	19	41	1.79
975090--975143	15	3.9	13	79	15	56	29	7	22	40	1.81
975235--975282	14	3.6	14	80	5	55	47	2	10	39	1.49
975704--975734	2	15.5	2	100	0	62	51	0	0	48	1.00
975913--975957	13	3.4	13	80	17	56	46	0	8	44	1.34
987175--987233	22	2.7	22	74	10	57	33	8	18	38	1.81
1001461--1001500	21	1.9	21	89	0	62	30	5	5	60	1.40
1002886--1002960	30	2.5	30	80	8	82	13	33	22	30	1.92
1002870--1003041	60	2.9	58	69	6	130	15	27	20	36	1.93
1005688--1005729	20	2.1	20	86	0	57	33	23	11	30	1.91
1010462--1010535	30	2.5	30	90	0	112	20	29	13	36	1.91
1020632--1020680	21	2.3	21	89	0	71	18	12	28	40	1.86
1032764--1032852	2	45.0	2	93	6	155	50	0	1	48	1.08
1032948--1033113	85	2.0	85	84	4	219	29	17	20	32	1.95
1033085--1033127	13	3.3	13	86	0	59	32	11	20	34	1.89
1035275--1035304	10	3.0	10	95	0	51	33	30	0	36	1.58
1035349--1035382	18	1.9	18	94	5	61	29	2	2	64	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1037064--1037100	18	2.1	18	94	0	65	24	24	21	29	1.99
1043754--1043781	2	14.0	2	100	0	56	50	0	0	50	1.00
1045468--1045549	3	27.3	3	100	0	164	67	0	0	32	0.91
1047647--1047714	31	2.2	31	84	10	86	23	19	25	32	1.97
1053834--1053896	23	2.7	23	82	0	81	20	20	23	34	1.96
1056204--1056250	13	3.6	13	85	0	58	19	44	14	21	1.86
1056246--1056290	13	3.3	13	82	17	56	17	35	22	24	1.95
1056251--1056309	15	3.9	15	78	8	59	16	32	25	25	1.97
1058764--1059281	43	12.1	43	93	1	801	16	26	24	31	1.97
1062089--1062137	19	2.6	19	86	0	71	28	26	24	20	1.99
1063525--1063593	23	3.0	23	80	0	75	18	20	24	36	1.95
1063631--1063671	17	2.4	17	100	0	82	29	26	4	39	1.77
1063990--1064024	2	17.5	2	100	0	70	48	0	0	51	1.00
1066457--1066481	11	2.3	11	100	0	50	72	0	0	28	0.86
1066457--1066490	17	2.0	17	88	11	52	70	0	0	29	0.87
1067323--1067347	2	12.5	2	100	0	50	52	0	0	48	1.00
1067515--1067616	24	4.2	24	73	5	80	48	15	15	20	1.82
1067508--1067616	48	2.3	48	75	0	110	49	15	14	20	1.79
1069765--1069819	2	27.5	2	100	0	110	50	0	0	49	1.00
1069987--1070086	24	4.2	24	75	5	94	47	17	15	21	1.83
1069980--1070088	48	2.3	48	77	0	119	48	16	14	20	1.81
1072558--1072619	8	7.6	8	76	20	58	22	25	37	14	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1072558--1072619	18	3.3	19	80	12	74	22	25	37	14	1.92
1074676--1074775	24	4.2	24	73	10	87	47	16	15	22	1.83
1074669--1074777	48	2.3	48	75	3	112	48	15	14	21	1.80
1077280--1077339	13	4.2	13	76	19	66	15	20	46	18	1.84
1077285--1077325	18	2.3	18	95	0	73	9	19	51	19	1.74
1077280--1077343	31	2.1	31	93	0	110	14	18	48	18	1.81
1078883--1078908	13	2.0	13	100	0	52	15	23	46	15	1.83
1081552--1081605	27	2.0	27	100	0	108	25	14	18	40	1.89
1086436--1086482	19	2.5	18	89	6	67	29	19	19	31	1.96
1089120--1089237	44	2.7	44	86	1	166	29	20	21	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28