genome.fa.s8323.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008323.1 Hibiscus syriacus cultivar Beakdansim tig00111027_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5101972

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  10  of  26  ( 3017 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1913936--1913972	14	2.6	14	82	0	56	62	13	8	16	1.54
1921169--1921221	14	3.8	13	76	11	52	50	1	1	45	1.23
1921169--1921221	28	1.9	27	88	11	81	50	1	1	45	1.23
1921210--1921332	22	5.3	24	76	19	111	43	8	2	45	1.48
1921200--1921349	26	6.0	26	72	19	108	44	8	2	45	1.44
1926287--1926420	20	6.6	20	75	8	92	32	23	17	26	1.97
1926306--1926353	21	2.3	20	85	3	60	35	16	18	29	1.93
1926371--1926441	21	3.4	21	77	11	83	38	25	16	19	1.93
1926345--1926442	41	2.4	41	91	0	160	37	25	15	21	1.92
1927013--1927093	20	4.1	20	82	3	101	19	18	23	38	1.93
1927013--1927093	39	2.0	40	90	2	128	19	18	23	38	1.93
1928980--1929048	20	3.5	20	87	0	93	33	24	24	17	1.96
1929691--1929760	21	3.3	21	70	5	61	27	34	18	20	1.96
1931146--1931200	14	3.8	14	76	7	56	36	0	16	47	1.47
1931299--1931356	20	2.9	21	72	10	59	43	24	17	15	1.87
1931346--1931544	20	10.3	20	75	9	162	28	17	21	32	1.96
1931522--1931804	140	2.0	140	94	0	494	43	14	13	28	1.83
1931877--1931904	12	2.3	12	100	0	56	7	14	14	64	1.48
1933625--1933661	14	2.6	14	91	4	56	5	21	21	51	1.68
1934710--1934837	20	6.3	20	76	8	125	23	17	27	32	1.96
1934725--1934837	41	2.8	39	85	4	145	23	16	26	33	1.96
1934863--1934899	19	1.9	19	88	0	56	21	18	29	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1937756--1937819	2	35.0	2	70	17	50	48	0	0	51	1.00
1937739--1937793	25	2.3	25	79	14	62	52	0	0	47	1.00
1937739--1937792	24	2.3	23	81	9	63	53	0	0	46	1.00
1937738--1937819	35	2.5	34	83	12	102	51	0	0	48	1.00
1937747--1937819	28	2.7	28	76	17	75	49	0	0	50	1.00
1937756--1937816	26	2.3	26	81	10	63	47	0	0	52	1.00
1938500--1938536	15	2.5	15	90	0	56	8	67	16	8	1.40
1940239--1940320	31	2.6	30	90	7	121	41	14	3	40	1.64
1941638--1941724	31	2.9	30	76	6	86	44	3	8	43	1.50
1944382--1944567	92	2.0	93	98	1	365	17	13	31	37	1.89
1944667--1944811	74	2.0	74	88	0	218	31	22	15	30	1.95
1948082--1948128	24	2.0	24	88	8	71	38	6	8	46	1.60
1948436--1948628	92	2.1	91	96	0	350	25	17	15	41	1.89
1950905--1950944	11	3.7	11	81	18	57	37	22	10	30	1.87
1951782--1951978	110	1.8	108	86	3	288	42	9	10	38	1.72
1953509--1953598	3	30.0	3	90	0	135	61	1	0	37	1.04
1953725--1954291	76	7.5	76	97	0	1053	36	21	20	20	1.95
1957446--1957782	92	3.7	92	93	1	561	36	23	14	25	1.93
1959885--1959940	10	5.3	11	83	16	66	0	16	0	83	0.64
1959893--1959940	19	2.3	22	86	10	66	0	14	0	85	0.60
1959885--1959932	15	3.1	15	91	8	71	0	14	0	85	0.60
1960234--1960271	2	19.0	2	100	0	76	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1965204--1965400	110	1.8	108	86	3	288	42	9	10	38	1.72
1966353--1966424	3	24.0	3	91	0	117	62	0	0	37	0.95
1970758--1970802	17	2.6	17	75	0	54	42	0	0	57	0.98
1970968--1971031	31	2.1	31	90	0	101	34	14	28	23	1.93
1970971--1971045	31	2.4	31	86	0	96	36	13	24	26	1.92
1972124--1972177	22	2.5	22	96	0	99	40	3	7	48	1.49
1972910--1973415	266	1.9	266	98	0	976	34	14	18	31	1.91
1977962--1978013	21	2.4	21	83	3	59	25	25	23	26	2.00
1978797--1978825	15	1.9	15	100	0	58	48	27	6	17	1.72
1978953--1979340	183	2.1	186	90	4	619	42	2	7	46	1.48
1979679--1979785	32	3.3	32	87	6	146	35	21	16	26	1.95
1980132--1980209	30	2.6	29	75	16	79	35	16	2	44	1.62
1980493--1980534	2	21.0	2	100	0	84	50	0	0	50	1.00
1982653--1982816	60	2.7	60	78	7	188	34	24	3	37	1.71
1982835--1982894	31	1.9	31	93	0	102	40	16	3	40	1.65
1984829--1984878	24	2.0	24	84	3	64	56	18	6	20	1.62
1987921--1988006	36	2.3	37	86	7	113	24	4	2	68	1.20
1991002--1991040	19	2.1	19	100	0	78	15	25	20	38	1.92
1991269--1991339	16	4.6	15	70	18	56	77	4	16	1	1.00
1991281--1991359	23	3.5	22	75	21	67	81	5	11	2	0.96
1991269--1991339	30	2.3	33	80	11	87	77	4	16	1	1.00
1992879--1992965	37	2.4	37	92	1	140	25	20	13	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1992792--1993037	102	2.4	102	93	0	411	31	19	11	37	1.87
1992813--1993132	167	1.9	168	81	1	392	30	18	12	38	1.88
1992915--1993085	65	2.6	65	81	2	173	31	18	11	39	1.85
1993052--1993170	36	3.3	36	85	2	166	26	21	14	37	1.91
1993119--1993298	66	2.7	64	81	10	195	31	19	9	39	1.84
1994017--1994275	110	2.4	110	80	5	269	34	23	17	24	1.96
1995675--1995737	17	3.5	17	70	19	56	30	6	1	61	1.30
1995707--1995867	45	3.6	42	73	17	121	27	4	1	66	1.20
1995781--1995869	36	2.4	37	82	12	96	23	5	2	68	1.22
1996003--1996063	25	2.5	24	78	5	68	16	4	4	73	1.18
2005298--2005322	10	2.5	10	100	0	50	56	20	16	8	1.65
2005612--2005640	14	2.0	15	93	6	51	27	10	0	62	1.28
2008748--2008882	61	2.2	60	92	1	225	43	16	11	28	1.83
2008918--2008945	10	2.8	10	100	0	56	50	7	10	32	1.64
2009607--2009641	2	17.5	2	100	0	70	48	0	0	51	1.00
2009879--2009932	29	1.9	29	85	7	76	62	14	3	18	1.46
2012464--2012488	12	2.1	12	100	0	50	44	8	8	40	1.63
2012453--2012736	38	7.6	38	87	5	388	44	6	4	44	1.51
2012435--2012737	72	4.1	72	85	10	353	45	6	4	43	1.48
2012650--2012710	11	5.1	11	72	18	50	44	4	6	44	1.51
2013405--2014011	85	7.1	85	85	1	759	27	16	19	36	1.93
2015140--2015371	99	2.6	89	78	14	260	33	19	15	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2015187--2015394	99	2.1	99	91	2	339	33	17	14	34	1.90
2019794--2019847	18	2.9	19	75	8	58	66	1	1	29	1.12
2019878--2019968	37	2.6	34	76	11	101	46	8	2	42	1.47
2019883--2020018	42	3.3	42	79	12	140	44	8	2	44	1.45
2019997--2020046	2	25.5	2	95	4	93	50	0	0	50	1.00
2020032--2020198	78	2.2	73	88	8	237	45	4	2	47	1.37
2020388--2020506	53	2.3	53	91	1	186	33	15	14	36	1.87
2020798--2020870	37	2.0	37	100	0	146	30	16	27	26	1.97
2022475--2022531	17	3.2	17	80	11	53	71	7	0	21	1.08
2022742--2022785	22	2.0	21	86	4	61	63	0	6	29	1.20
2022742--2022780	19	2.0	21	90	10	64	66	0	5	28	1.12
2022673--2022908	130	1.8	131	88	3	368	57	4	8	28	1.49
2022684--2022986	130	2.3	130	82	8	321	59	4	9	27	1.48
2023436--2023477	21	2.1	20	86	8	59	7	42	33	16	1.75
2024617--2025368	106	7.1	106	93	0	1220	23	18	25	32	1.97
2024617--2025521	212	4.2	211	90	3	1326	22	18	25	33	1.97
2025263--2025468	62	3.3	62	67	16	190	23	18	25	32	1.97
2025349--2025388	20	2.0	20	100	0	80	20	20	25	35	1.96
2025243--2025493	125	2.0	125	100	0	502	23	18	24	33	1.97
2035711--2035744	10	3.4	10	87	0	50	73	0	5	20	1.04
2036783--2036839	17	3.2	17	80	11	53	71	7	0	21	1.08
2037051--2037094	22	2.0	21	86	4	61	63	0	6	29	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2037051--2037089	19	2.0	21	90	10	64	66	0	5	28	1.12
2036993--2037231	130	1.8	130	86	5	349	57	4	9	28	1.50
2037282--2037313	2	16.5	2	93	6	57	53	0	0	46	1.00
2037816--2037841	11	2.4	11	100	0	52	11	11	0	76	1.01
2041669--2041714	23	2.0	22	83	4	56	39	10	4	45	1.59
2048874--2048995	59	2.0	60	81	4	140	31	22	6	38	1.80
2051395--2051594	100	2.0	100	99	0	391	35	14	13	37	1.85
2051638--2051699	27	2.2	29	88	8	92	58	0	0	41	0.98
2051623--2051712	27	3.1	27	80	13	76	61	1	0	37	1.04
2052537--2052655	60	2.0	60	83	3	150	36	15	16	31	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26