genome.fa.s8323.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008323.1 Hibiscus syriacus cultivar Beakdansim tig00111027_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5101972

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  7  of  26  ( 3017 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1193451--1193507	10	5.5	10	76	12	53	21	3	5	70	1.22
1193450--1193509	11	5.6	11	73	15	54	21	3	5	70	1.22
1196869--1197024	60	2.6	60	76	12	144	35	16	3	44	1.64
1197144--1197261	60	2.0	60	84	3	157	38	4	22	34	1.74
1197168--1197281	60	1.9	59	81	1	138	35	5	22	35	1.77
1199258--1199290	15	2.2	15	94	0	57	9	69	15	6	1.34
1200143--1200258	54	2.2	54	76	4	119	41	5	12	41	1.64
1208912--1208984	23	3.2	23	88	0	110	41	20	4	34	1.72
1209002--1209046	22	2.0	22	91	0	72	40	11	6	42	1.67
1209401--1209473	23	3.2	23	88	0	101	38	20	5	35	1.76
1208512--1209770	487	2.6	486	96	0	2313	40	10	7	41	1.68
1210787--1211541	183	4.1	183	94	1	1322	33	16	14	35	1.90
1212751--1212847	12	7.8	12	84	6	122	18	32	10	38	1.85
1212772--1212847	6	12.7	6	80	0	80	18	32	9	39	1.82
1212750--1212847	24	4.0	24	87	7	142	19	32	10	37	1.85
1214365--1215100	198	3.7	199	93	1	1237	30	18	15	36	1.92
1215201--1215261	19	3.3	18	88	2	59	52	11	1	34	1.47
1215213--1215261	19	2.6	19	96	0	89	55	10	2	32	1.45
1216255--1216319	32	2.0	33	87	3	96	23	47	0	29	1.52
1216353--1216417	21	3.1	21	88	0	94	18	29	10	41	1.84
1218629--1218671	20	2.3	18	85	14	61	20	16	11	51	1.75
1218634--1218692	20	3.0	19	80	9	73	20	15	10	54	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1218815--1218861	20	2.3	20	86	10	69	19	17	8	55	1.67
1218601--1219073	181	2.6	180	87	3	644	27	16	12	43	1.84
1219285--1219309	5	5.0	5	100	0	50	20	0	20	60	1.37
1230348--1230461	30	3.8	30	86	9	144	31	20	20	28	1.97
1231307--1231344	20	1.9	20	89	10	60	15	31	31	21	1.94
1235234--1235262	15	2.0	15	93	6	51	37	0	27	34	1.57
1239437--1239480	22	2.0	21	86	4	61	18	25	31	25	1.97
1239523--1239587	32	2.0	34	88	11	100	21	13	15	49	1.79
1240070--1240113	23	2.0	23	82	13	56	52	6	2	38	1.41
1246243--1246324	23	3.7	22	78	9	78	24	32	24	18	1.97
1247892--1247932	18	2.3	18	91	8	66	43	21	34	0	1.53
1249972--1250051	34	2.4	34	91	0	133	30	18	17	33	1.94
1252575--1252622	25	1.9	25	83	8	62	10	10	6	72	1.26
1255842--1255933	45	2.0	46	97	2	177	42	13	8	35	1.75
1257070--1257271	101	2.0	101	100	0	404	43	8	16	30	1.79
1263014--1263112	29	3.4	27	69	19	67	35	21	5	38	1.75
1262998--1263167	60	2.8	59	80	7	182	33	22	5	38	1.77
1263188--1263243	29	1.9	29	85	0	76	44	7	23	25	1.78
1263218--1263344	60	2.1	61	82	4	150	34	7	25	32	1.85
1266028--1266395	184	2.0	184	100	0	736	32	12	14	41	1.83
1271058--1271265	75	2.8	75	87	2	283	24	31	23	20	1.98
1278896--1278946	9	6.2	8	76	19	52	13	0	27	58	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1278898--1278941	17	2.6	17	85	7	63	13	0	29	56	1.38
1279565--1279732	75	2.2	75	84	2	212	22	31	24	21	1.98
1284374--1284424	20	2.5	20	81	6	59	29	21	25	23	1.99
1284996--1285052	28	2.1	27	83	9	71	42	7	21	29	1.79
1285128--1285192	31	2.1	31	85	5	87	26	18	21	33	1.96
1285151--1285280	30	4.3	30	89	1	170	25	18	23	33	1.97
1290394--1290418	12	2.1	12	100	0	50	84	8	0	8	0.79
1292375--1292465	45	2.0	45	93	4	157	39	10	5	43	1.63
1299400--1299448	20	2.5	20	96	0	89	36	6	6	51	1.52
1310344--1310858	230	2.2	229	81	7	582	40	19	13	26	1.88
1314509--1314564	29	2.0	28	96	3	103	28	33	0	37	1.58
1316203--1316243	22	2.0	20	85	9	55	39	0	0	60	0.96
1316821--1316866	16	3.1	15	76	11	51	73	0	2	23	0.94
1319367--1319497	45	2.9	45	91	1	210	30	21	6	41	1.79
1325989--1326048	22	2.7	24	75	12	65	25	33	23	18	1.97
1329483--1329566	27	3.1	26	65	18	71	40	22	4	32	1.75
1330246--1330307	3	21.7	3	75	15	60	38	0	0	61	0.96
1330238--1330322	17	5.5	17	73	23	64	38	0	0	61	0.96
1330238--1330306	20	3.3	19	72	23	59	37	0	0	62	0.96
1330243--1330307	26	2.5	25	85	7	85	38	0	0	61	0.96
1330247--1330323	20	3.6	20	70	24	59	38	0	0	61	0.96
1330784--1330813	12	2.5	12	100	0	60	70	30	0	0	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1331794--1331878	34	2.3	36	75	20	95	42	3	2	51	1.31
1332142--1332181	11	3.3	13	80	13	50	50	2	0	47	1.14
1332609--1332663	24	2.5	22	80	11	58	27	3	1	67	1.17
1337967--1338008	10	4.2	10	79	11	50	76	0	21	2	0.90
1337977--1338011	17	2.1	17	94	0	61	80	0	17	2	0.84
1337977--1338021	17	2.7	17	86	3	56	75	0	20	4	0.97
1337990--1338041	25	2.0	26	88	7	79	69	0	25	5	1.10
1340188--1340407	114	1.9	114	93	0	377	33	15	21	30	1.94
1342445--1342533	46	1.9	46	88	0	133	35	13	23	26	1.92
1342487--1342594	54	2.0	54	83	0	135	35	13	22	28	1.92
1342966--1343066	22	4.6	22	96	0	175	32	14	13	38	1.86
1343737--1343907	76	2.2	76	93	0	288	24	20	21	33	1.97
1343928--1344241	112	2.8	112	95	0	549	38	14	19	28	1.90
1344151--1344331	91	2.0	90	94	1	317	38	14	19	27	1.91
1344241--1344961	112	6.5	112	88	4	982	38	14	19	28	1.91
1345202--1345268	3	22.7	3	85	14	95	34	0	0	65	0.93
1345988--1346064	33	2.3	33	93	0	127	9	29	44	16	1.79
1347128--1347167	11	3.3	13	80	13	50	50	2	0	47	1.14
1350842--1350884	17	2.4	19	81	14	56	41	2	2	53	1.26
1362146--1362193	18	2.8	17	90	6	71	35	6	29	29	1.82
1362778--1362855	32	2.4	32	91	0	129	38	37	11	12	1.80
1369493--1369796	117	2.6	117	93	1	513	33	5	27	33	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1372724--1372758	18	1.9	18	88	0	52	28	17	0	54	1.43
1374065--1374154	45	2.0	45	86	0	126	34	24	20	21	1.96
1374829--1374881	28	2.0	26	92	7	88	47	1	47	3	1.31
1374826--1374891	28	2.3	29	80	17	84	46	1	45	6	1.37
1379278--1379366	44	2.0	45	84	2	117	34	24	20	20	1.96
1380039--1380093	28	2.0	28	96	0	101	47	1	45	5	1.36
1381203--1381246	21	2.1	21	83	8	54	50	6	0	43	1.29
1382120--1382191	3	23.7	3	81	8	74	33	4	0	62	1.14
1382861--1382885	2	12.5	2	100	0	50	52	0	48	0	1.00
1385120--1385187	34	2.0	34	100	0	136	38	11	23	26	1.89
1385299--1385362	21	3.0	21	68	16	51	45	0	3	51	1.17
1390271--1390314	18	2.4	18	92	0	79	18	38	0	43	1.50
1392257--1392609	175	2.0	176	91	7	583	31	22	15	30	1.95
1396988--1397176	98	1.9	98	85	0	261	26	16	24	31	1.97
1400522--1400579	10	6.0	10	70	13	50	46	0	5	48	1.24
1405377--1405409	16	2.1	16	100	0	66	36	6	24	33	1.80
1408264--1408305	21	2.0	21	100	0	84	47	14	23	14	1.80
1408335--1408390	29	1.9	29	96	0	103	12	37	30	19	1.89
1408406--1408454	10	4.6	10	76	14	53	8	42	26	22	1.81
1408394--1408484	33	2.8	33	89	3	130	9	39	26	24	1.86
1408521--1408578	29	2.0	29	86	0	80	24	27	34	13	1.93
1424019--1424109	40	2.2	40	84	3	110	32	4	9	52	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1426671--1426697	2	13.5	2	100	0	54	51	0	0	48	1.00
1433589--1433640	15	3.5	15	89	0	77	7	15	67	9	1.41
1436493--1436542	26	2.0	24	85	11	66	34	20	4	42	1.70
1437173--1437287	56	2.1	56	93	0	194	30	8	13	47	1.72
1437356--1437407	26	2.0	26	96	0	95	36	11	25	26	1.90
1438210--1438251	18	2.3	18	100	0	84	50	9	35	4	1.56
1440950--1440989	21	1.9	21	94	0	71	32	30	15	22	1.94
1441015--1441053	19	2.1	19	90	0	60	20	35	15	28	1.93
1440970--1441162	64	3.0	66	77	9	202	32	25	13	28	1.94
1441147--1441198	19	2.7	19	96	0	95	21	30	21	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26