genome.fa.s8323.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008323.1 Hibiscus syriacus cultivar Beakdansim tig00111027_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5101972

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  23  of  26  ( 3017 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4591230--4591302	23	3.2	23	92	0	119	38	21	5	34	1.77
4591716--4591786	23	3.2	23	86	8	101	38	21	5	35	1.77
4590339--4592130	974	1.8	978	96	1	3357	40	10	7	41	1.68
4594634--4595390	183	4.1	183	94	1	1268	33	16	14	36	1.88
4596601--4596664	12	5.3	12	88	0	83	21	32	9	35	1.86
4596600--4596653	15	3.6	15	92	0	90	24	33	9	33	1.87
4596601--4596669	6	11.5	6	87	0	75	21	31	10	36	1.87
4596655--4596691	18	2.1	18	89	0	56	16	29	10	43	1.82
4598151--4599089	200	4.7	200	93	1	1535	31	17	15	35	1.91
4598151--4599089	399	2.3	400	92	1	1546	31	17	15	35	1.91
4599787--4599830	21	2.1	21	86	0	61	31	27	25	15	1.96
4600564--4600719	31	5.0	31	92	1	251	21	19	21	37	1.95
4603709--4603752	21	2.1	21	86	0	61	31	27	25	15	1.96
4604264--4604309	24	2.0	22	84	12	58	47	0	19	32	1.50
4604487--4604642	31	5.0	31	90	1	242	21	19	21	37	1.95
4607633--4607676	21	2.1	21	86	0	61	31	27	25	15	1.96
4608186--4608232	23	2.0	24	91	4	78	44	0	21	34	1.52
4608410--4608565	31	5.0	31	92	1	251	21	19	21	37	1.95
4609451--4609515	19	3.4	19	97	0	121	55	10	1	32	1.44
4611311--4611376	33	2.0	33	90	0	105	22	48	0	28	1.51
4611410--4611474	21	3.1	21	93	0	103	16	30	10	41	1.83
4613613--4613655	20	2.3	18	85	14	61	20	16	11	51	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4613618--4613664	20	2.4	19	82	10	67	19	17	10	53	1.72
4613799--4613845	20	2.3	20	89	10	78	17	17	10	55	1.69
4613585--4614057	181	2.6	182	89	0	696	27	16	13	42	1.85
4617993--4618021	2	14.5	2	100	0	58	48	0	0	51	1.00
4620238--4620318	5	16.6	5	72	12	53	74	2	4	18	1.12
4620255--4620314	4	13.8	4	77	19	50	75	1	3	20	1.04
4620255--4620318	9	7.2	9	77	10	69	75	1	3	20	1.03
4620250--4620318	36	1.9	35	85	8	95	75	1	4	18	1.05
4620639--4620674	2	18.0	2	100	0	72	50	0	0	50	1.00
4622749--4622983	100	2.3	100	83	4	281	22	18	25	34	1.96
4622800--4622983	100	1.8	100	89	0	287	20	18	25	36	1.95
4622924--4623026	43	2.4	43	93	0	179	16	14	25	43	1.86
4623010--4623159	67	2.2	67	96	0	273	26	17	24	32	1.97
4623957--4624001	7	6.6	7	87	12	67	0	11	2	86	0.65
4623957--4624001	13	3.3	14	85	14	67	0	11	2	86	0.65
4630658--4630697	21	1.9	21	84	0	53	20	27	7	45	1.78
4634354--4634479	5	25.0	5	68	20	50	73	2	8	15	1.19
4634393--4634443	19	2.8	18	85	5	59	72	1	5	19	1.15
4634354--4634474	9	13.2	9	65	17	54	73	2	8	15	1.17
4634800--4634837	2	19.0	2	100	0	76	50	0	0	50	1.00
4634744--4634809	32	2.0	32	82	14	80	60	1	10	27	1.38
4637563--4637651	34	2.7	32	79	8	90	40	0	2	57	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4640028--4640133	34	3.1	34	86	2	160	51	5	4	37	1.46
4640545--4641205	127	5.2	127	93	1	1119	32	20	24	21	1.98
4642650--4642791	71	2.0	70	97	1	266	38	26	7	28	1.82
4642907--4642992	24	3.7	24	70	16	72	33	24	22	19	1.97
4642913--4642992	23	3.4	23	68	14	65	33	25	22	18	1.97
4644759--4644806	3	15.3	3	78	8	51	41	0	0	58	0.98
4644750--4644793	19	2.2	19	88	12	61	47	0	0	52	1.00
4644761--4644819	16	3.6	16	79	6	66	44	0	0	55	0.99
4644752--4644796	22	2.0	22	87	8	65	48	0	0	51	1.00
4646367--4646421	21	2.7	21	82	2	67	50	1	1	45	1.22
4651563--4651642	2	41.0	2	95	5	146	51	0	0	48	1.00
4651929--4651972	22	2.0	22	95	0	79	65	13	15	4	1.41
4651970--4652068	14	7.2	14	78	17	93	81	0	17	1	0.74
4651992--4652063	1	72.0	1	74	0	54	86	0	13	0	0.58
4651958--4652055	26	3.8	24	85	11	115	81	0	17	1	0.74
4651940--4652060	51	2.3	51	80	15	129	79	2	16	1	0.92
4651985--4652061	20	3.7	20	80	13	93	84	0	14	1	0.69
4651985--4652061	6	13.5	6	73	23	69	84	0	14	1	0.69
4651962--4652069	40	2.6	43	84	11	136	81	0	17	0	0.74
4651968--4652069	21	4.9	20	76	16	93	82	0	16	0	0.73
4657438--4657805	184	2.0	183	94	1	648	32	14	13	39	1.86
4657785--4657881	48	2.0	48	97	0	185	19	17	23	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4657833--4658133	76	3.9	76	94	0	503	23	19	21	35	1.96
4658259--4658306	3	15.3	3	78	8	51	41	0	0	58	0.98
4658250--4658319	16	3.8	19	75	21	62	45	0	0	54	0.99
4658252--4658296	22	2.0	22	87	8	65	48	0	0	51	1.00
4659845--4659885	2	21.0	2	95	5	75	51	0	0	48	1.00
4664305--4664342	18	2.1	18	100	0	76	31	5	28	34	1.80
4666792--4666837	24	1.9	24	82	8	58	71	6	19	2	1.18
4675724--4675764	2	21.0	2	85	5	57	0	51	0	48	1.00
4679308--4679339	16	1.9	17	93	6	57	50	6	6	37	1.53
4681725--4681788	3	22.3	3	87	9	98	67	0	0	32	0.91
4681994--4682302	135	2.3	133	87	2	431	24	18	32	24	1.97
4682224--4682323	40	2.5	40	81	6	112	20	18	37	25	1.94
4682347--4682400	28	1.9	28	88	0	81	46	16	14	22	1.84
4682570--4682708	65	2.2	63	86	2	188	43	13	11	31	1.80
4682574--4682708	63	2.1	64	86	2	182	42	14	11	31	1.81
4682874--4682948	31	2.4	31	84	8	91	40	13	17	29	1.87
4682970--4683055	30	2.9	29	81	5	91	40	10	22	26	1.86
4682806--4683027	97	2.3	95	80	8	234	40	13	18	27	1.88
4683256--4683336	31	2.6	32	78	7	94	37	13	17	32	1.89
4683352--4683489	36	3.8	36	83	7	165	36	12	18	33	1.88
4683428--4683770	102	3.3	102	80	7	390	40	10	17	31	1.84
4683752--4683870	35	3.3	36	86	3	159	37	10	18	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4684230--4684269	16	2.5	16	83	0	53	25	2	25	47	1.64
4692554--4692610	3	20.0	3	83	16	77	70	0	0	29	0.88
4692554--4692610	20	3.0	20	85	10	84	70	0	0	29	0.88
4692555--4692632	14	5.3	15	81	13	76	73	2	0	24	0.96
4692555--4692639	32	2.6	31	83	9	91	75	2	0	22	0.92
4700090--4700171	40	2.0	40	100	0	164	32	12	19	35	1.89
4701565--4701608	21	2.1	21	83	8	54	43	15	0	40	1.47
4705106--4705183	40	1.9	41	86	2	113	42	6	7	43	1.59
4705313--4705372	30	2.0	30	100	0	120	43	6	20	30	1.77
4712712--4713136	41	10.4	41	82	3	480	26	18	19	35	1.95
4712715--4713136	125	3.4	122	82	4	474	26	18	19	35	1.95
4713531--4713561	4	7.8	4	92	0	53	25	3	51	19	1.62
4717687--4717766	36	2.2	36	90	0	124	30	16	15	38	1.89
4718636--4718694	21	2.8	21	84	0	73	18	5	20	55	1.61
4718841--4719072	43	5.4	44	87	5	253	27	22	21	28	1.99
4718841--4719072	86	2.7	86	87	2	315	27	22	21	28	1.99
4720045--4720078	18	1.9	18	88	5	52	73	2	0	23	0.97
4722625--4722737	56	2.0	57	91	1	183	40	5	16	37	1.72
4723206--4723280	29	2.6	29	89	0	114	38	28	13	20	1.90
4723474--4723533	23	2.7	22	74	5	66	31	6	15	46	1.71
4723849--4723902	22	2.5	22	88	5	76	51	29	3	14	1.60
4724100--4724148	21	2.4	21	83	12	66	55	32	0	12	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4734901--4735057	64	2.5	63	81	5	181	24	24	19	31	1.98
4736471--4736497	14	1.9	14	100	0	54	33	14	14	37	1.88
4760067--4760151	43	2.0	43	95	0	152	38	7	18	35	1.78
4765009--4765039	15	2.1	15	93	0	53	45	0	0	54	0.99
4765200--4765237	20	1.9	20	88	0	58	21	26	10	42	1.85
4768724--4768848	65	1.9	65	85	6	166	30	15	22	32	1.94
4769172--4769204	12	2.6	13	90	4	50	36	6	9	48	1.60
4770949--4770982	12	2.8	12	90	4	50	44	5	11	38	1.65
4771461--4771563	44	2.3	44	83	3	136	28	19	23	29	1.98
4780762--4780808	24	1.9	25	83	12	62	38	8	4	48	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26