Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008323.1 Hibiscus syriacus cultivar Beakdansim tig00111027_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5101972

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  26  of  26  ( 3017 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5076358--5076399
3
13.7
3
95
5
75
69
0
0
30
0.89
5076361--5076401
19
2.2
19
100
0
82
68
0
0
31
0.90
5077058--5077168
41
2.7
41
82
0
141
27
17
18
36
1.93
5077550--5077598
22
2.2
22
100
0
98
28
40
26
4
1.74
5080475--5080672
43
4.6
43
75
6
177
30
25
20
23
1.99
5083281--5083337
27
2.1
27
83
0
69
38
10
10
40
1.74
5085038--5085087
25
2.0
26
84
11
68
62
2
10
26
1.38
5086013--5086108
49
2.0
50
91
8
162
56
8
0
35
1.30
5086276--5086304
13
2.3
13
94
5
51
13
68
0
17
1.20
5087687--5087736
21
2.3
21
79
3
55
26
8
22
44
1.80
5089807--5089848
22
1.9
22
85
9
59
40
9
19
30
1.83
5091602--5091652
11
4.5
11
88
11
68
0
17
0
82
0.67
5091602--5091654
23
2.2
25
86
6
74
0
16
0
83
0.66
5091598--5091652
10
5.8
10
75
10
53
0
18
0
81
0.68
5091602--5091667
12
5.4
12
82
8
73
1
16
0
81
0.76
5091602--5091668
13
5.5
11
78
18
62
1
16
0
82
0.75
5091611--5091668
28
2.1
28
84
12
75
1
15
0
82
0.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26

The End!