genome.fa.s8323.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008323.1 Hibiscus syriacus cultivar Beakdansim tig00111027_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5101972

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  8  of  26  ( 3017 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1443240--1443291	26	2.0	26	92	0	86	38	11	23	26	1.89
1444499--1444535	10	3.5	10	92	7	56	72	2	0	24	0.97
1446653--1446703	23	2.3	22	82	3	66	39	1	1	56	1.22
1446831--1446864	2	17.5	2	93	6	61	50	0	0	50	1.00
1448503--1448552	26	1.9	25	84	15	66	16	10	10	64	1.50
1451943--1452017	25	2.8	28	90	8	111	16	12	8	64	1.49
1453639--1453704	23	2.9	23	82	8	98	19	25	25	28	1.99
1453639--1453727	44	2.0	45	86	4	126	20	23	26	29	1.99
1454685--1454795	53	2.1	53	96	0	204	28	2	27	40	1.70
1456919--1457409	81	6.1	79	77	6	378	34	15	19	31	1.92
1457147--1457288	41	3.5	39	69	9	97	33	10	22	33	1.88
1461248--1461327	21	3.8	21	90	3	115	22	5	23	48	1.70
1464613--1464809	71	2.5	82	73	18	220	41	16	12	29	1.84
1466157--1466226	31	2.3	31	82	0	86	38	7	8	45	1.62
1467475--1467521	18	2.6	18	96	0	85	17	36	17	29	1.92
1467488--1467527	18	2.2	18	90	0	62	20	27	20	32	1.97
1469483--1469542	29	2.1	29	93	0	102	43	13	18	25	1.86
1485929--1486001	24	3.0	25	84	7	89	53	10	12	23	1.69
1489918--1489982	22	3.0	22	93	4	114	29	26	26	18	1.98
1490200--1490259	30	2.0	31	90	3	95	33	23	6	36	1.81
1490273--1490342	28	2.5	28	88	4	97	37	12	10	40	1.77
1490702--1490744	21	2.0	21	90	0	68	6	30	32	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1490765--1490807	21	2.0	21	86	0	59	16	25	27	30	1.97
1490658--1490807	67	2.3	65	81	8	169	18	25	24	32	1.97
1496765--1496831	22	3.0	22	100	0	134	26	26	26	19	1.99
1497047--1497106	30	2.0	31	90	3	95	33	23	6	36	1.81
1497120--1497191	29	2.5	29	93	0	117	38	12	9	38	1.76
1497277--1497316	18	2.2	18	95	0	71	25	32	10	32	1.89
1497580--1497622	21	2.0	21	90	0	68	6	30	32	30	1.84
1497521--1497663	68	2.1	68	88	1	207	16	27	25	30	1.97
1497643--1497685	21	2.0	21	86	0	59	16	25	27	30	1.97
1501825--1501865	21	2.0	20	85	4	55	60	0	4	34	1.18
1505400--1505473	28	2.6	28	82	4	85	47	14	16	21	1.82
1510881--1510944	28	2.2	29	86	8	94	35	6	15	42	1.72
1510888--1510944	28	2.0	28	93	0	96	35	7	15	42	1.75
1521372--1521418	2	23.5	2	100	0	94	51	0	0	48	1.00
1521517--1521570	28	1.9	28	96	0	99	31	3	9	55	1.49
1522460--1522508	21	2.4	21	82	3	64	40	18	22	18	1.91
1522500--1522614	20	5.7	20	81	6	106	32	24	18	25	1.97
1522460--1522628	61	2.8	62	78	5	148	36	21	18	23	1.95
1522802--1522845	22	2.0	22	95	0	79	20	45	15	18	1.85
1523108--1523166	20	3.0	20	87	0	73	16	18	22	42	1.89
1523303--1523357	25	2.2	24	78	15	58	20	9	18	52	1.71
1524486--1524530	18	2.5	18	88	0	72	26	44	15	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1524696--1524742	21	2.2	21	84	0	58	23	17	29	29	1.97
1525012--1525067	20	2.8	20	83	2	69	37	23	23	16	1.93
1525051--1525137	32	2.7	33	90	3	140	47	19	18	14	1.83
1525067--1525124	14	3.9	14	75	16	53	48	20	17	13	1.81
1525158--1525248	14	5.9	14	72	20	74	12	16	21	49	1.78
1525153--1525264	33	3.4	33	92	1	190	12	17	21	48	1.80
1525249--1525304	20	2.8	19	86	7	76	16	25	23	35	1.94
1525670--1525756	40	2.1	40	85	4	120	21	42	14	20	1.88
1527176--1527211	14	2.6	14	90	0	54	30	0	22	47	1.52
1527348--1527395	19	2.6	19	96	3	89	47	16	20	14	1.82
1527432--1527507	20	3.8	20	72	6	73	17	19	21	42	1.90
1527420--1527523	40	2.9	34	76	15	109	15	22	22	40	1.91
1527720--1527769	20	2.5	20	76	0	64	22	16	22	40	1.91
1527796--1527847	20	2.5	21	87	3	70	21	23	17	38	1.93
1528619--1528672	24	2.2	24	90	0	81	22	16	20	40	1.91
1528847--1528883	12	3.1	12	96	0	65	72	0	24	2	0.97
1531172--1531302	19	7.7	19	66	23	94	42	19	22	14	1.88
1531172--1531298	33	3.8	33	88	4	202	42	19	22	14	1.88
1531173--1531305	66	2.0	66	97	0	248	41	19	22	16	1.90
1531461--1531497	14	2.6	14	91	0	65	45	24	0	29	1.53
1532870--1532985	21	5.5	21	68	4	63	23	21	32	22	1.98
1532850--1533000	42	3.6	41	75	8	151	21	19	36	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1533205--1533389	91	2.0	93	90	6	297	47	18	11	22	1.81
1535027--1535115	20	4.8	19	72	18	80	44	19	23	12	1.84
1535052--1535115	33	1.9	34	90	3	103	42	21	25	10	1.85
1535687--1535726	20	2.0	20	100	0	80	30	20	30	20	1.97
1535748--1535801	20	2.7	20	97	0	99	25	16	24	33	1.96
1536235--1536305	36	2.0	36	97	0	133	22	19	8	49	1.75
1537261--1537311	18	2.7	19	84	3	68	52	11	19	15	1.73
1537256--1537311	19	2.9	19	78	7	69	51	10	21	16	1.74
1545098--1545217	49	2.4	48	77	10	134	30	16	8	45	1.77
1545672--1545704	2	16.5	2	100	0	66	51	0	0	48	1.00
1550769--1550809	20	2.0	20	100	0	82	43	26	4	24	1.74
1552774--1552929	64	2.5	64	81	5	172	32	18	22	26	1.97
1554411--1554454	23	1.9	23	90	0	70	20	25	22	31	1.98
1556984--1557020	16	2.3	16	95	0	65	32	0	32	35	1.58
1560225--1560258	17	1.9	18	88	5	52	32	0	14	52	1.42
1570109--1570686	44	13.3	44	66	8	232	29	20	20	29	1.98
1569875--1570728	130	6.5	130	85	2	985	29	20	20	30	1.97
1571177--1571542	39	9.7	39	84	7	391	34	17	20	27	1.95
1571316--1571542	79	2.9	79	90	1	359	34	19	20	25	1.96
1571310--1571542	118	2.0	117	93	0	403	33	19	20	25	1.96
1573335--1573360	2	13.0	2	100	0	52	50	0	0	50	1.00
1576530--1576571	20	2.1	20	86	8	59	61	0	11	26	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1587119--1587206	45	2.0	45	90	0	140	28	14	27	29	1.95
1596422--1596471	3	16.7	3	91	0	82	30	2	2	66	1.14
1601157--1601244	32	2.8	31	82	5	104	19	23	29	27	1.98
1601153--1601265	32	3.5	31	75	2	100	18	23	29	29	1.98
1602836--1602986	78	1.9	78	79	0	167	35	17	16	31	1.92
1606034--1606072	17	2.2	18	86	4	53	69	5	12	12	1.35
1608448--1608511	29	2.2	29	82	0	83	56	6	6	31	1.49
1611747--1611807	24	2.3	26	83	10	81	37	4	6	50	1.50
1612195--1612274	36	2.2	36	97	0	151	47	6	11	35	1.64
1616890--1616939	26	1.9	26	100	0	100	34	10	16	40	1.81
1620924--1620971	23	2.1	23	92	0	78	37	10	18	33	1.85
1621024--1621264	118	2.1	118	98	0	466	29	12	9	48	1.73
1621565--1621637	23	3.2	23	78	7	85	39	20	4	35	1.72
1622002--1622064	23	2.7	23	92	0	99	38	20	4	36	1.74
1621399--1623617	429	5.0	430	81	10	2771	40	12	7	40	1.71
1622487--1622549	23	2.7	23	92	0	99	38	20	4	36	1.74
1622918--1622980	23	2.7	23	92	0	99	38	20	4	36	1.74
1621163--1623187	916	2.2	914	95	2	3672	39	11	7	41	1.70
1623347--1623409	23	2.7	23	92	0	99	38	20	4	36	1.74
1624979--1625066	12	7.3	12	85	0	104	20	31	9	38	1.84
1624991--1625060	36	1.9	36	94	0	122	18	31	11	38	1.86
1624979--1625066	6	14.7	6	76	4	70	20	31	9	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1626538--1627493	199	4.8	199	96	0	1709	29	17	15	37	1.91
1626524--1627493	397	2.4	397	94	1	1721	29	17	15	37	1.91
1627611--1627660	19	2.6	19	93	0	82	56	10	2	32	1.44
1629555--1629598	21	2.1	21	91	0	70	15	31	11	40	1.83
1631771--1632243	181	2.6	181	88	3	675	26	15	13	43	1.85
1633726--1633760	2	18.0	2	94	5	63	51	0	0	48	1.00
1635830--1636640	303	2.7	301	82	4	940	28	14	20	36	1.93
1635831--1636640	298	2.7	298	81	5	909	28	14	20	36	1.93
1637519--1637566	22	2.2	22	92	7	80	20	16	25	37	1.93
1641239--1641306	29	2.3	30	82	10	86	17	23	17	41	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26