genome.fa.s8323.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008323.1 Hibiscus syriacus cultivar Beakdansim tig00111027_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5101972

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  2  of  26  ( 3017 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
217750--217774	13	1.9	13	100	0	50	16	4	16	64	1.44
218532--218659	56	2.3	56	97	0	238	46	10	17	25	1.81
219039--219105	31	2.2	31	83	0	80	40	2	16	40	1.64
219052--219115	31	2.1	31	93	0	110	37	0	15	46	1.46
227098--227159	32	1.9	32	90	0	97	20	17	16	45	1.86
227765--227827	1	63.0	1	74	0	54	3	9	0	87	0.65
227765--227827	9	7.2	9	82	7	76	3	9	0	87	0.65
227773--227838	6	11.5	6	79	12	59	3	13	0	83	0.76
227770--227820	11	4.5	11	85	4	75	3	7	0	88	0.63
227765--227841	9	7.7	10	78	17	54	2	14	0	83	0.76
230352--230412	23	2.7	23	76	20	58	52	9	14	22	1.71
232781--232831	7	7.6	7	76	8	52	68	0	3	27	1.07
232855--232897	20	2.0	22	86	8	63	62	0	6	30	1.21
234986--235022	3	12.0	3	94	5	65	64	0	0	35	0.94
236278--236328	15	3.2	15	88	8	66	33	29	21	15	1.94
236716--236854	60	2.3	60	85	2	181	36	12	12	37	1.83
245585--245651	29	2.3	29	80	16	77	49	5	4	40	1.48
247258--247620	21	16.6	21	66	18	145	22	51	5	21	1.67
247279--247422	48	3.1	46	76	13	134	22	51	5	20	1.68
247258--247547	45	6.6	44	70	20	123	22	50	5	22	1.69
247373--247440	18	3.5	20	81	11	72	23	50	5	20	1.70
247351--247617	66	4.1	66	79	8	312	21	51	5	21	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
247258--247772	21	23.2	21	64	24	120	21	52	5	20	1.67
247538--247647	27	4.2	27	72	20	90	19	57	4	19	1.58
247528--247698	48	3.6	47	88	3	227	19	54	5	19	1.62
247528--247705	96	1.9	96	85	2	250	19	54	5	20	1.63
247722--247778	21	2.7	21	86	0	69	21	59	3	15	1.51
248094--248161	31	2.2	31	86	0	91	36	22	2	38	1.69
251372--251508	60	2.3	61	81	8	156	39	18	10	31	1.85
255877--255947	34	2.1	33	87	10	99	63	14	2	19	1.42
255986--256029	13	3.4	13	80	0	52	68	13	2	15	1.31
256151--256182	15	2.1	15	100	0	64	6	34	25	34	1.81
260098--260155	22	2.6	23	83	2	64	20	20	31	27	1.98
262324--262497	89	2.0	89	89	4	271	35	12	7	44	1.71
265816--265972	64	2.4	65	77	11	162	32	20	19	28	1.97
266684--267004	103	3.1	103	94	0	561	26	11	23	37	1.90
267021--267086	23	2.9	23	90	0	96	22	25	25	25	2.00
272352--272670	103	3.1	103	93	1	552	27	13	23	36	1.92
272687--272752	23	2.9	23	88	0	87	22	24	25	27	2.00
275762--275936	90	2.0	89	90	3	280	37	11	6	44	1.67
281872--281905	9	3.9	9	84	7	52	61	2	0	35	1.11
281873--281906	17	2.0	17	100	0	68	58	5	0	35	1.22
281884--281929	24	1.9	24	82	8	58	65	4	0	30	1.12
282837--282873	16	2.4	16	86	8	51	24	0	8	67	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
282864--282936	30	2.4	31	81	9	87	38	0	1	60	1.06
284337--284372	18	2.0	18	88	0	54	55	0	2	41	1.14
288929--288963	17	2.0	18	88	5	54	42	14	2	40	1.60
291880--291914	2	17.5	2	100	0	70	51	0	0	48	1.00
301442--301512	36	2.0	36	91	0	115	21	19	14	45	1.85
302037--302066	2	15.0	2	100	0	60	50	0	0	50	1.00
302127--302155	3	9.7	3	100	0	58	68	0	0	31	0.89
304283--304348	29	2.3	29	94	0	123	42	7	16	33	1.77
306529--306568	20	2.0	20	95	0	71	47	2	5	45	1.38
306945--307060	18	6.1	20	65	19	52	47	0	4	47	1.28
306976--307041	11	6.3	11	69	22	52	45	1	4	48	1.32
313272--313410	37	3.8	37	83	9	169	42	14	13	29	1.84
313950--313979	16	1.9	16	93	6	53	20	0	3	76	0.92
314282--314332	9	5.7	9	82	13	61	17	3	0	78	0.90
314287--314332	5	9.8	5	83	9	53	17	4	0	78	0.91
316960--316992	14	2.4	14	94	0	57	42	18	6	33	1.75
317298--317370	11	7.0	10	74	13	67	80	5	13	0	0.87
317304--317370	27	2.4	28	85	2	91	80	5	13	0	0.88
317298--317378	20	4.0	20	76	13	67	80	4	13	1	0.94
317311--317370	14	4.3	14	77	14	61	80	6	13	0	0.91
318852--318973	36	3.4	36	75	8	106	24	20	16	38	1.92
318902--319176	138	2.0	138	85	2	374	28	20	12	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
318989--319112	36	3.4	36	84	6	160	26	20	12	40	1.88
319071--319245	67	2.6	65	84	6	217	32	21	9	36	1.85
319062--319244	68	2.7	67	84	4	219	30	21	9	38	1.85
319849--320328	105	4.6	105	90	4	751	33	26	18	21	1.96
319849--320328	204	2.3	208	92	3	781	33	26	18	21	1.96
320267--320371	43	2.4	43	93	3	176	35	24	20	20	1.96
320162--320476	148	2.1	148	96	1	578	33	27	18	20	1.96
320310--320646	105	3.3	102	85	6	441	32	26	18	22	1.97
321189--321287	33	2.8	36	89	10	161	41	15	15	28	1.87
321189--321321	36	3.8	34	84	10	162	40	14	15	30	1.86
321888--321919	2	16.5	2	93	6	57	50	0	0	50	1.00
322159--322199	8	5.0	8	82	5	55	19	0	0	80	0.71
327368--327433	31	2.1	31	91	0	105	36	15	27	21	1.93
328460--328516	27	2.1	27	96	0	105	47	33	3	15	1.63
330522--330596	31	2.4	31	86	0	105	28	30	9	32	1.88
331962--332041	35	2.3	35	91	4	126	45	23	0	31	1.54
332753--332846	35	2.7	35	83	3	111	30	3	26	39	1.72
332769--332846	35	2.3	35	88	4	115	33	2	23	41	1.68
353980--354021	2	22.0	2	90	9	70	50	0	0	50	1.00
353980--354021	17	2.5	17	96	0	75	50	0	0	50	1.00
355950--356011	33	1.9	32	90	6	99	45	17	6	30	1.74
356678--356719	20	2.0	21	95	4	77	23	26	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
360056--360089	16	2.1	16	94	0	59	32	26	8	32	1.87
361434--361476	22	2.0	22	90	0	68	53	4	18	23	1.63
362102--362163	2	31.0	2	100	0	124	50	0	0	50	1.00
363689--363741	3	18.0	3	88	11	83	67	0	0	32	0.91
363734--363772	2	20.0	2	94	5	71	51	0	0	48	1.00
363802--363841	15	2.7	15	88	0	53	47	7	0	45	1.31
363812--364144	37	8.9	37	78	14	285	45	8	3	43	1.49
363924--363948	12	2.1	12	100	0	50	44	8	8	40	1.63
364748--365667	83	11.1	80	78	7	699	25	20	24	29	1.99
364724--365667	329	2.9	328	86	3	1243	25	20	24	29	1.99
364746--365667	164	5.6	164	86	1	1193	25	20	24	29	1.99
366995--367040	2	24.0	2	91	8	78	50	0	0	50	1.00
367025--367207	37	5.2	34	77	16	162	48	3	4	43	1.41
367063--367207	70	2.1	69	83	10	188	48	2	5	44	1.37
367160--367218	25	2.3	26	80	8	77	49	1	5	44	1.34
367295--367342	23	2.1	22	81	14	53	54	4	0	41	1.20
367381--367451	11	5.8	12	77	14	58	18	2	2	76	1.04
367381--367429	25	1.9	26	84	12	66	18	4	4	73	1.15
367416--367450	7	5.3	7	96	3	56	22	0	0	77	0.78
367419--367452	6	5.3	6	96	3	50	20	0	0	79	0.73
368706--368756	25	2.0	25	88	0	75	19	3	1	74	1.07
373815--374574	81	9.5	80	76	9	622	30	24	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373767--374540	246	3.2	242	82	6	770	30	24	20	24	1.99
374900--374946	24	2.0	24	83	8	60	48	6	2	42	1.40
374889--375063	34	5.1	34	75	13	146	48	2	3	45	1.34
374891--375063	35	5.2	33	76	14	133	48	2	3	45	1.34
375032--375092	26	2.2	28	88	8	90	44	4	8	42	1.55
375129--375192	29	2.3	27	83	5	83	51	4	3	40	1.38
374924--375243	34	9.8	32	68	19	98	45	4	4	45	1.43
375276--375317	3	13.7	3	82	9	50	26	2	0	71	0.98
379822--379856	17	2.0	17	88	5	52	37	37	5	20	1.76
381941--381993	2	27.0	2	90	3	81	54	0	0	45	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26