genome.fa.s8323.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008323.1 Hibiscus syriacus cultivar Beakdansim tig00111027_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5101972

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  3  of  26  ( 3017 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
382038--382251	36	5.9	37	82	10	187	45	7	3	42	1.49
382137--382279	37	3.9	36	81	13	125	44	8	2	45	1.45
382169--382279	38	2.9	39	80	11	113	43	8	1	46	1.43
382239--382269	2	15.5	2	100	0	62	48	0	0	51	1.00
387506--387590	23	3.7	23	80	0	98	17	22	23	36	1.95
387506--387607	23	4.4	23	74	9	84	17	20	25	36	1.94
387506--387615	46	2.4	46	81	6	134	17	21	25	35	1.95
391909--391968	21	3.0	21	76	14	72	28	30	25	16	1.97
396707--396753	21	2.2	21	92	0	76	21	23	31	23	1.98
396862--396893	16	2.0	16	93	0	55	50	25	9	15	1.74
397891--397970	7	11.4	7	82	0	52	23	1	30	45	1.61
398040--398140	7	14.7	7	76	4	89	21	0	33	43	1.60
398062--398137	27	2.8	27	86	4	109	22	0	31	46	1.52
398298--398338	14	3.1	14	76	20	52	41	0	4	53	1.22
400783--400915	20	6.5	20	71	14	83	36	23	19	21	1.95
400846--401121	20	13.6	20	76	8	227	38	24	18	18	1.93
400846--401121	81	3.4	81	81	5	308	38	24	18	18	1.93
400907--401118	41	5.2	41	90	1	329	37	24	18	19	1.94
401674--401764	20	4.6	20	82	9	114	51	18	16	13	1.76
401689--401766	41	1.9	41	92	2	131	51	19	17	11	1.76
401791--401903	20	6.1	19	76	13	119	12	23	19	45	1.84
403359--403738	94	4.1	94	95	1	656	21	12	18	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403826--403889	19	3.8	17	76	16	71	43	21	23	10	1.84
403802--403889	19	4.9	19	69	21	64	45	20	21	12	1.84
403896--404019	19	6.8	19	75	14	118	13	21	20	44	1.86
403896--404019	33	3.4	37	77	13	116	13	21	20	44	1.86
403899--404019	52	2.2	54	85	7	156	14	21	19	44	1.86
404472--404538	21	3.2	21	66	6	55	23	35	20	19	1.95
404420--404538	42	2.8	42	81	5	107	22	36	18	22	1.95
405864--405899	14	2.6	14	95	0	63	33	0	22	44	1.53
406006--406089	14	5.1	17	70	24	72	45	17	23	13	1.84
406006--406132	33	3.8	33	92	2	202	46	21	20	11	1.82
406149--406208	19	3.4	19	69	21	67	13	21	16	48	1.80
406133--406221	14	5.6	14	68	23	52	11	25	19	43	1.84
406135--406221	33	2.6	33	94	0	156	11	25	18	44	1.83
406214--406287	20	3.7	20	69	16	62	24	17	25	32	1.97
407168--407219	24	2.2	24	82	0	59	36	21	19	23	1.95
408082--408124	20	2.2	19	83	4	50	32	23	18	25	1.97
408117--408275	20	7.9	20	96	0	264	20	16	25	37	1.94
409517--409606	46	2.0	46	90	0	144	35	12	17	34	1.87
409825--409883	29	2.0	29	93	0	100	27	13	10	49	1.74
413488--413540	26	2.0	26	96	0	97	37	7	18	35	1.80
413868--413926	29	2.0	29	96	0	109	23	11	13	50	1.74
416407--416465	29	2.0	29	100	0	118	49	13	13	23	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
421093--421151	29	2.0	29	100	0	118	49	13	13	23	1.78
426541--426932	195	2.0	191	90	4	610	32	11	15	41	1.83
427171--427354	92	2.0	92	100	0	368	47	13	10	28	1.76
427386--427431	18	2.6	18	89	3	67	28	30	6	34	1.82
437421--437464	21	2.0	21	82	4	52	27	13	22	36	1.92
437477--437548	23	3.2	23	64	28	64	27	9	16	45	1.79
437496--437569	21	3.4	21	67	20	62	25	9	21	43	1.83
437451--437571	44	2.8	44	93	0	206	28	9	19	42	1.82
451603--451634	12	2.7	12	95	0	55	15	21	21	40	1.91
461990--462020	16	2.0	16	93	6	55	67	0	25	6	1.14
462927--463001	30	2.5	30	82	2	89	16	16	9	58	1.62
463104--463147	22	2.0	21	91	4	70	29	0	11	59	1.32
469835--469897	29	2.2	29	97	2	119	28	12	9	49	1.72
474335--474394	29	2.1	28	96	3	111	28	13	10	48	1.74
475060--475108	22	2.2	22	100	0	98	46	14	26	12	1.79
478502--478534	8	4.1	8	96	0	57	33	12	15	39	1.84
479661--479717	29	2.0	29	82	6	71	38	10	3	47	1.55
488716--488750	17	1.9	19	88	11	56	51	11	2	34	1.53
489822--489915	21	4.6	21	78	4	102	23	17	24	35	1.95
491018--491090	24	3.0	23	76	7	67	46	16	12	24	1.81
491051--491119	24	2.9	24	73	2	68	43	17	13	26	1.85
491776--491817	13	3.3	13	86	6	68	16	21	45	16	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
491796--491849	18	3.0	18	94	0	99	16	16	48	18	1.82
491780--491816	12	2.9	13	88	8	58	18	18	45	16	1.85
491852--491906	10	5.6	10	85	10	78	34	29	21	14	1.93
491852--491907	19	2.9	19	87	10	78	33	28	21	16	1.95
498113--498178	24	2.7	23	75	9	62	45	16	13	24	1.84
498874--498915	13	3.3	13	86	6	68	16	21	45	16	1.86
498894--498947	18	3.0	18	94	0	99	16	16	48	18	1.82
498878--498914	12	2.9	13	88	8	58	18	18	45	16	1.85
498950--499002	9	5.4	10	84	10	74	35	30	20	13	1.91
500258--500287	8	3.9	8	95	4	53	26	0	0	73	0.84
502046--502087	21	2.0	21	100	0	84	57	4	0	38	1.20
502318--502355	19	2.1	18	85	9	51	50	2	5	42	1.39
507502--507591	40	2.2	40	80	3	101	32	20	13	34	1.91
507524--507589	20	3.3	20	74	16	64	30	19	15	34	1.93
508378--508411	12	2.8	12	90	0	50	55	29	0	14	1.40
508523--508590	24	2.8	24	81	0	82	27	17	16	38	1.91
510862--510897	18	2.0	18	94	0	63	55	25	2	16	1.55
511202--511329	20	6.4	20	86	0	148	45	25	17	10	1.82
511380--511415	16	2.2	16	90	0	54	66	13	0	19	1.24
511518--511600	20	4.2	20	87	0	112	44	21	16	16	1.86
511757--511888	20	6.6	20	82	0	156	45	22	16	15	1.85
511876--511905	14	2.1	14	93	0	51	56	26	10	6	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
511377--511958	292	2.0	281	81	11	658	36	18	15	29	1.92
511979--512024	13	3.4	13	77	11	56	56	17	0	26	1.41
511984--512158	63	2.8	64	93	6	295	52	17	1	29	1.52
513498--513585	21	4.2	21	83	0	104	23	20	37	18	1.94
513498--513585	42	2.1	42	91	4	142	23	20	37	18	1.94
513938--513980	21	2.0	21	82	8	52	32	37	9	20	1.85
513997--514046	21	2.4	21	89	0	73	32	30	14	24	1.94
514160--514214	21	2.6	21	94	0	92	14	14	38	32	1.87
515740--515778	20	2.0	20	89	0	60	53	17	15	12	1.72
515790--515848	20	2.8	20	89	7	82	11	18	18	50	1.76
516357--516572	20	10.8	20	75	5	106	20	17	19	41	1.90
516454--516535	40	2.0	40	88	0	119	14	17	21	46	1.84
521079--521116	19	2.0	19	100	0	76	31	10	26	31	1.90
522032--522076	23	2.0	23	82	8	56	62	13	2	22	1.42
523949--523994	22	2.1	22	95	0	83	52	19	8	19	1.72
523953--524019	22	3.1	21	83	10	73	56	17	7	17	1.63
525953--525978	13	2.0	13	100	0	52	23	15	23	38	1.92
528602--528654	5	9.8	5	76	15	52	7	22	50	18	1.72
528595--528655	17	3.3	17	79	20	77	11	22	47	18	1.80
528575--528605	7	4.4	7	95	0	53	25	25	29	19	1.99
528588--528654	22	3.0	22	93	4	107	11	23	46	17	1.82
528651--528749	9	10.3	9	76	10	72	30	27	26	16	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
528657--528750	19	4.8	19	77	13	77	30	27	24	17	1.97
528676--528750	29	2.5	31	89	8	120	29	26	26	17	1.97
535920--535972	5	9.8	5	76	15	52	7	22	50	18	1.72
535913--535973	17	3.3	17	79	20	77	11	22	47	18	1.80
535906--535972	22	3.0	22	93	4	107	11	23	46	17	1.82
535969--536067	9	10.3	9	76	10	72	30	27	26	16	1.96
535975--536068	19	4.8	19	77	13	77	30	27	24	17	1.97
535994--536068	29	2.5	31	89	8	120	29	26	26	17	1.97
541940--542046	33	3.2	34	78	14	89	34	0	3	61	1.14
541971--542047	33	2.4	33	85	10	97	38	0	1	59	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26