genome.fa.s8426.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008426.1 Hibiscus syriacus cultivar Beakdansim tig00111210_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4445546

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  12  of  18  ( 2101 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2582182--2582226	3	15.0	3	100	0	90	33	0	0	66	0.92
2582225--2582304	3	26.7	3	97	0	151	0	1	32	66	1.00
2593493--2593564	19	3.7	19	81	5	81	18	22	27	31	1.97
2593520--2593564	10	4.8	9	86	10	54	15	26	28	28	1.96
2593561--2593593	14	2.3	15	89	5	50	24	57	18	0	1.40
2593561--2593593	5	6.8	5	86	6	50	24	57	18	0	1.40
2600818--2600876	18	3.3	18	78	7	66	20	47	23	8	1.77
2600844--2600881	12	3.3	12	78	14	53	18	44	23	13	1.85
2600816--2600881	22	3.2	21	81	14	84	19	43	22	13	1.86
2602522--2602981	55	8.4	55	87	0	591	37	17	10	33	1.85
2605131--2605155	4	6.2	4	100	0	50	24	0	0	76	0.80
2606341--2606372	2	16.0	2	100	0	64	50	0	0	50	1.00
2614409--2614477	13	5.5	12	75	11	50	78	4	11	5	1.07
2614419--2614479	24	2.6	23	81	5	68	80	4	8	6	1.02
2614410--2614461	16	3.2	17	81	8	54	80	5	9	3	0.99
2619983--2620018	18	2.0	18	100	0	72	33	11	11	44	1.75
2625846--2625944	45	2.2	44	82	8	121	31	22	18	28	1.97
2625870--2625970	23	4.4	23	82	6	118	28	22	18	29	1.98
2628623--2628727	46	2.3	46	83	4	124	31	23	14	30	1.94
2628947--2628971	10	2.5	10	100	0	50	72	20	8	0	1.10
2635148--2635236	17	5.2	16	70	14	54	38	10	8	42	1.70
2635349--2635375	7	3.9	7	100	0	54	25	14	14	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2637373--2637716	59	5.9	59	90	4	534	30	20	13	35	1.91
2638029--2638082	22	2.6	20	83	11	72	27	29	14	27	1.95
2638030--2638248	95	2.3	94	81	4	242	27	25	16	29	1.97
2638681--2638719	18	2.2	18	95	0	69	35	25	5	33	1.78
2644259--2644663	59	6.9	59	95	0	720	30	21	13	34	1.92
2644976--2645027	22	2.5	20	81	6	59	28	26	15	28	1.96
2646373--2646405	11	2.8	12	90	9	50	21	3	0	75	0.93
2647511--2647557	2	24.0	2	95	4	87	51	0	0	48	1.00
2648622--2648682	29	2.2	28	85	8	81	26	27	34	11	1.91
2648715--2648817	52	2.0	52	96	0	188	17	15	41	25	1.88
2648716--2648798	26	3.2	25	65	19	62	18	15	40	25	1.89
2648886--2648922	17	2.2	17	95	0	65	35	35	13	16	1.88
2648958--2649065	44	2.5	44	89	6	173	19	25	25	30	1.98
2648990--2649092	21	4.8	21	74	9	91	19	25	24	31	1.98
2649265--2649299	18	1.9	18	88	0	52	51	17	20	11	1.75
2649463--2649506	21	2.1	21	91	0	70	29	0	15	54	1.42
2649483--2649545	28	2.2	30	94	5	112	30	0	12	57	1.36
2649654--2649751	43	2.3	41	83	10	110	45	1	7	45	1.37
2653370--2653505	49	2.8	49	95	4	256	41	0	12	45	1.47
2653721--2653762	11	3.7	11	96	3	75	52	0	2	45	1.13
2653783--2653863	25	3.3	24	83	14	96	44	3	8	43	1.52
2653783--2654090	26	13.1	23	73	16	140	45	2	8	43	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2653887--2654107	26	8.7	25	80	10	218	47	2	8	42	1.45
2653896--2654072	49	3.6	46	81	8	138	47	2	7	42	1.45
2653927--2654043	6	20.2	6	65	6	53	50	1	5	41	1.37
2653783--2654113	12	26.8	12	71	16	198	45	2	8	43	1.47
2656438--2656471	15	2.2	16	94	5	61	55	5	0	38	1.24
2656626--2656715	45	2.0	47	84	8	123	50	12	1	36	1.47
2656918--2656964	14	3.5	13	77	11	51	2	40	0	57	1.11
2656967--2657024	26	2.3	26	87	3	82	6	36	10	46	1.65
2657257--2657315	29	2.0	29	90	0	91	23	27	35	13	1.92
2656931--2657903	486	2.0	486	100	0	1946	21	26	23	28	1.99
2657453--2657510	26	2.3	26	87	3	82	6	36	10	46	1.65
2657743--2657801	29	2.0	29	90	0	91	23	27	35	13	1.92
2662713--2662744	12	2.6	13	90	9	50	40	9	9	40	1.70
2663699--2663731	17	2.0	17	94	5	59	12	21	36	30	1.90
2664140--2664178	18	2.2	18	86	9	53	33	2	12	51	1.54
2664636--2664708	30	2.5	30	82	4	87	19	10	6	63	1.49
2664652--2664771	30	4.0	30	81	2	134	15	8	10	65	1.47
2664626--2664763	59	2.3	58	81	8	154	18	7	9	64	1.46
2674754--2674798	17	2.6	17	89	3	63	64	8	13	13	1.49
2678440--2678484	23	1.9	24	86	4	65	42	6	31	20	1.77
2678940--2679010	36	2.0	36	83	5	90	35	15	14	35	1.88
2679088--2679189	40	2.5	40	91	0	159	24	34	17	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2680328--2680356	14	2.1	14	100	0	58	27	0	13	58	1.36
2680365--2680485	21	5.7	21	72	14	95	59	0	1	38	1.07
2680373--2680486	17	6.6	18	74	20	102	58	0	1	39	1.08
2680428--2680483	14	3.7	14	76	17	58	55	0	3	41	1.17
2680370--2680517	32	4.5	34	81	15	163	56	0	1	41	1.12
2680371--2680517	11	13.6	11	67	25	66	56	0	1	41	1.13
2680527--2680564	19	2.0	19	100	0	76	47	10	5	36	1.61
2680557--2680599	22	2.0	22	95	0	77	46	2	6	44	1.43
2681037--2681096	20	3.4	17	74	21	52	43	0	3	53	1.17
2681034--2681073	20	2.0	21	95	5	73	42	0	5	52	1.23
2681073--2681103	12	2.5	13	89	10	55	48	0	0	51	1.00
2681101--2681158	9	6.1	10	78	6	50	25	0	0	74	0.82
2681096--2681201	28	3.9	28	71	11	78	28	1	0	69	0.99
2681092--2681197	37	2.7	39	79	13	105	28	1	0	69	0.99
2681130--2681199	8	7.9	8	74	25	61	25	2	0	71	1.00
2681893--2681941	13	3.5	13	88	8	62	59	2	0	38	1.09
2685199--2685241	22	2.0	22	95	0	77	44	6	2	46	1.43
2685234--2685288	19	2.9	19	89	7	78	41	3	9	45	1.53
2685305--2685433	23	5.4	23	73	17	88	41	1	0	57	1.08
2685306--2685423	32	3.7	30	82	12	130	40	1	0	57	1.09
2685316--2685434	18	7.2	18	72	22	86	38	1	0	59	1.07
2685313--2685433	7	16.3	7	67	23	61	39	1	0	58	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2685340--2685432	17	5.1	19	74	19	67	40	1	0	58	1.05
2685321--2685435	21	5.4	21	72	21	96	40	1	0	58	1.08
2686098--2686247	75	2.0	75	100	0	300	22	18	21	37	1.94
2690256--2690285	6	5.0	6	91	0	51	16	20	16	46	1.84
2692132--2692167	6	6.0	6	87	12	56	19	16	16	47	1.83
2694548--2694855	126	2.4	125	84	5	424	33	15	25	25	1.95
2695800--2695901	42	2.5	41	81	1	123	24	23	22	29	1.99
2695642--2696143	216	2.3	213	91	1	797	32	16	19	32	1.94
2699912--2699985	30	2.5	29	76	6	76	17	9	9	63	1.50
2703809--2703889	12	6.8	12	73	0	72	22	14	19	43	1.88
2705275--2705458	99	1.9	99	94	0	323	20	14	27	38	1.91
2706251--2706322	30	2.4	30	78	2	81	44	5	19	30	1.73
2706631--2706710	3	26.7	3	97	0	151	33	1	0	65	1.01
2709402--2709456	21	2.6	21	91	0	83	18	43	21	16	1.88
2710950--2711011	23	2.9	21	85	7	81	20	35	25	17	1.95
2714497--2714637	55	2.6	55	91	0	228	41	13	24	21	1.89
2714993--2715030	13	2.9	13	92	0	58	23	15	10	50	1.75
2714990--2715033	19	2.3	19	80	7	54	22	15	11	50	1.76
2714990--2715033	6	7.0	6	80	10	52	22	15	11	50	1.76
2718783--2719169	125	3.1	125	87	0	558	33	16	25	24	1.95
2720296--2720464	37	4.6	37	85	2	232	36	21	17	24	1.95
2720296--2720464	73	2.3	74	87	3	250	36	21	17	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2720673--2721262	55	10.8	55	81	6	485	32	15	23	27	1.95
2720673--2721031	109	3.3	110	88	3	512	32	14	23	30	1.94
2720675--2721024	164	2.1	165	89	2	528	32	14	23	30	1.94
2721002--2721310	54	5.6	54	78	3	246	33	18	22	24	1.97
2727991--2728039	24	2.0	24	84	0	62	59	0	0	40	0.98
2728245--2728446	79	2.6	76	88	7	296	24	18	24	31	1.98
2728404--2729091	153	4.6	151	86	4	896	21	19	22	36	1.96
2728324--2728605	115	2.4	115	87	3	422	23	18	24	34	1.97
2728533--2729294	36	20.9	36	72	13	375	20	20	22	36	1.95
2728404--2729298	72	12.2	72	72	9	529	21	19	22	35	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18