genome.fa.s8426.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008426.1 Hibiscus syriacus cultivar Beakdansim tig00111210_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4445546

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  4  of  18  ( 2101 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
644221--644285	31	2.1	31	97	0	121	35	6	6	52	1.51
646203--646242	2	20.0	2	100	0	80	50	0	0	50	1.00
646364--646418	14	4.1	13	79	4	56	25	3	3	67	1.23
646425--646458	15	2.4	14	90	5	50	26	5	0	67	1.13
646320--646449	41	3.1	42	74	14	108	26	5	2	65	1.26
646683--646776	49	1.9	48	85	6	127	13	12	3	70	1.29
647704--647730	4	6.8	4	100	0	54	0	22	0	77	0.76
651716--652438	110	6.7	110	88	3	997	34	21	17	25	1.95
651716--652453	324	2.3	326	88	3	1062	34	21	18	25	1.96
652574--652939	85	4.4	83	80	6	389	30	25	19	24	1.99
652576--652991	85	5.0	80	79	6	287	31	24	19	24	1.98
652629--652991	165	2.2	168	84	6	452	32	24	19	23	1.98
655869--655935	12	6.6	10	80	17	52	38	0	0	61	0.96
655896--655934	2	19.5	2	94	0	69	46	0	0	53	1.00
655947--656032	14	6.1	14	70	16	54	23	1	3	72	1.07
655955--656025	13	4.9	15	77	14	53	25	1	4	69	1.15
655953--656026	14	5.1	14	79	9	69	24	1	4	70	1.13
656023--656094	27	2.7	26	80	8	74	26	9	0	63	1.25
656350--656402	14	4.0	13	78	9	54	15	7	0	77	0.98
662363--662453	45	2.0	45	100	0	182	47	4	10	37	1.59
666001--666055	20	2.8	20	97	0	101	36	5	18	40	1.74
673981--674027	16	3.0	15	87	9	67	59	0	2	38	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
675028--675156	68	1.9	68	85	0	177	32	22	13	31	1.93
675276--675320	23	2.0	23	100	0	90	24	17	13	44	1.85
675372--675410	16	2.4	17	91	4	62	48	25	7	17	1.74
676914--676974	29	2.1	29	90	0	95	49	4	3	42	1.40
682041--682077	17	2.2	17	90	0	56	29	13	13	43	1.82
685776--685834	17	3.5	17	68	13	50	28	15	8	47	1.74
688332--688430	20	4.8	20	76	11	85	30	20	12	37	1.89
688450--688516	20	3.4	19	78	11	73	20	20	7	50	1.72
689259--689286	12	2.3	12	100	0	56	57	32	0	10	1.33
692035--692083	19	2.5	19	83	3	62	42	22	16	18	1.88
692095--692148	20	2.7	20	82	0	72	20	20	20	38	1.93
693660--693806	21	7.0	21	76	13	81	26	13	37	22	1.91
693675--693789	42	2.7	42	78	7	126	26	13	37	22	1.91
694118--694204	21	4.1	21	65	11	52	37	34	9	18	1.83
694118--694237	63	1.9	63	82	0	150	35	34	10	19	1.86
694371--694515	42	3.5	41	83	2	177	20	14	38	26	1.91
694371--694536	42	4.0	42	84	2	176	23	14	36	25	1.93
696075--696107	14	2.3	15	89	5	50	51	15	9	24	1.72
696103--696169	20	3.4	19	80	10	73	52	19	13	14	1.75
696176--696214	20	2.0	20	94	0	69	12	12	23	51	1.74
696648--696703	20	2.8	20	86	0	76	37	8	21	32	1.84
703839--703888	20	2.5	20	76	0	64	28	18	24	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
704001--704054	20	2.7	20	77	11	65	33	24	11	31	1.90
707735--707826	16	5.8	16	75	5	78	45	29	14	10	1.78
708334--708497	60	2.7	60	79	5	170	37	4	22	35	1.76
708402--708517	60	1.9	60	81	6	137	40	4	18	36	1.71
708654--708723	24	3.0	24	80	2	88	47	10	0	42	1.37
708763--708801	12	3.3	11	86	13	51	46	2	0	51	1.14
715559--715619	3	21.3	3	76	15	58	31	1	0	67	1.01
715573--715624	26	1.9	27	88	7	79	30	3	0	65	1.10
716262--716294	2	17.0	2	93	6	59	48	0	0	51	1.00
719209--719264	29	1.9	29	89	7	87	16	10	12	60	1.58
721071--722220	165	6.9	166	80	6	1006	30	24	19	24	1.98
721071--722272	84	14.5	83	78	6	1074	31	24	19	24	1.98
721071--722220	249	4.6	249	88	1	1644	30	24	19	24	1.98
722693--722744	9	5.8	9	81	6	52	34	0	1	63	1.06
722696--722729	17	2.0	17	88	11	52	35	0	0	64	0.94
723284--723349	24	2.8	24	82	15	68	18	4	3	74	1.12
724326--724355	14	2.1	14	100	0	60	26	13	13	46	1.80
724719--724772	29	1.9	29	85	7	76	51	0	0	48	1.00
728424--728490	23	2.8	25	77	18	72	61	8	11	17	1.56
730970--731104	71	1.9	70	89	4	209	23	18	24	33	1.97
732609--733473	430	2.0	430	100	0	1730	25	18	27	28	1.98
734046--734103	21	2.6	22	75	15	57	53	1	1	43	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
739177--739235	13	4.5	13	89	0	82	35	16	18	28	1.93
739168--739235	26	2.6	26	85	0	82	35	17	20	26	1.95
742769--743232	39	11.4	39	70	11	196	41	13	6	38	1.71
742769--742948	40	4.6	39	78	6	193	40	11	6	41	1.68
742768--742948	79	2.3	79	81	2	213	39	11	6	41	1.67
743000--743075	40	1.9	40	86	5	109	50	18	2	28	1.61
743295--743624	58	5.7	58	84	5	341	43	12	6	37	1.67
743292--743624	117	2.9	114	82	7	345	44	12	6	37	1.68
743395--743651	117	2.2	117	82	5	295	43	13	8	34	1.74
743789--743890	45	2.3	45	91	0	159	44	13	10	31	1.79
746142--746221	37	2.2	37	97	0	151	37	13	12	36	1.83
746813--746990	41	4.5	40	84	10	215	47	3	5	42	1.45
746813--746990	81	2.2	77	88	6	250	47	3	5	42	1.45
746823--747028	39	5.5	37	73	19	137	47	3	5	43	1.42
747013--747059	5	9.6	5	90	4	69	42	0	0	57	0.98
747050--747114	30	2.2	30	83	10	80	10	9	3	76	1.11
754004--754037	17	2.1	16	88	5	50	14	8	0	76	1.01
760393--760435	20	2.1	21	87	8	63	18	13	0	67	1.23
760392--760441	20	2.5	20	75	15	59	18	18	0	64	1.30
764353--764559	76	2.9	74	82	10	241	57	13	1	27	1.46
768464--768506	2	21.5	2	100	0	86	51	0	0	48	1.00
768490--768772	40	6.9	39	73	17	197	46	4	4	44	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
768488--768813	39	8.3	38	72	19	181	45	4	4	45	1.44
768476--768813	164	2.1	159	85	9	441	45	4	4	45	1.43
768644--768673	2	15.5	2	93	6	53	53	0	0	46	1.00
768571--768750	87	2.1	86	87	7	258	47	3	3	45	1.37
768608--768710	50	2.0	51	85	10	140	47	3	3	44	1.39
768608--768710	52	2.0	51	85	11	138	47	3	3	44	1.39
768746--768858	33	3.5	33	82	9	151	43	6	7	43	1.56
768739--768858	64	1.9	64	91	3	197	44	5	6	43	1.54
768744--768876	64	2.1	62	84	6	169	43	6	6	42	1.57
768872--768918	5	9.6	5	82	13	62	40	0	0	59	0.97
771657--771706	17	2.9	17	77	13	50	32	4	4	60	1.34
773899--773970	26	3.0	24	68	27	62	26	6	4	62	1.39
778921--778967	24	2.1	23	88	11	71	29	8	48	12	1.71
781098--781151	24	2.3	23	83	3	63	44	18	22	14	1.86
781098--781159	23	2.6	24	78	12	65	45	17	20	16	1.86
785691--785775	36	2.4	36	95	0	161	28	18	11	41	1.86
785861--785911	24	2.1	24	85	7	68	60	13	1	23	1.43
795925--795972	24	2.0	24	84	8	62	58	14	2	25	1.48
803546--803587	14	3.1	14	80	13	52	38	2	28	30	1.70
804484--804543	19	3.1	19	75	4	57	31	0	13	55	1.39
805166--805212	17	2.6	18	86	10	69	23	2	2	72	1.06
805272--805305	17	1.9	18	88	5	52	17	2	0	79	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
810436--810479	10	4.4	9	86	13	52	9	0	6	84	0.79
810419--810477	22	2.8	21	82	14	84	11	0	8	79	0.93
812144--812169	12	2.2	12	100	0	52	30	34	11	23	1.90
821218--821244	7	3.9	7	100	0	54	0	14	0	85	0.61
822064--822157	26	3.5	27	84	11	113	21	2	1	75	0.97
822063--822228	5	32.6	5	71	17	94	19	4	0	75	1.01
822116--822224	34	3.2	34	75	16	111	18	6	0	75	1.01
823493--823525	2	16.5	2	100	0	66	51	0	0	48	1.00
824727--824751	2	12.5	2	100	0	50	52	0	0	48	1.00
825844--825890	24	2.1	21	88	11	67	25	8	53	12	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18