genome.fa.s8426.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008426.1 Hibiscus syriacus cultivar Beakdansim tig00111210_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4445546

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  8  of  18  ( 2101 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1452565--1452637	3	24.3	3	88	0	110	61	0	2	35	1.10
1464779--1464936	21	7.8	20	72	7	86	38	25	17	18	1.92
1464903--1465057	40	3.8	40	82	4	186	37	26	18	18	1.93
1464903--1465056	20	7.7	20	80	7	168	37	26	18	18	1.93
1465437--1465507	33	2.2	33	92	0	115	11	22	18	47	1.80
1465587--1465692	21	5.6	20	72	16	91	45	17	24	12	1.83
1465600--1465696	20	5.2	20	72	18	100	46	17	24	11	1.81
1465580--1465696	41	3.1	38	80	14	136	46	16	25	11	1.81
1465647--1465703	14	3.7	14	75	20	60	43	22	24	8	1.81
1465639--1465719	33	2.5	33	95	0	144	46	22	22	8	1.78
1465737--1465825	14	5.7	14	73	21	79	8	24	22	43	1.82
1465720--1465833	33	3.5	33	96	2	212	10	23	20	45	1.82
1467527--1468172	93	7.1	93	97	2	1213	21	13	19	45	1.83
1467527--1468172	184	3.5	184	97	2	1205	21	13	19	45	1.83
1468220--1468347	19	7.3	19	74	17	116	45	28	17	8	1.78
1468256--1468347	33	2.8	32	90	6	141	45	28	18	7	1.76
1468348--1468438	33	2.8	32	90	3	146	10	19	21	47	1.80
1468411--1468475	19	3.4	19	87	4	87	10	16	27	44	1.81
1470375--1470410	14	2.6	14	95	0	63	33	0	22	44	1.53
1470514--1470610	19	5.4	19	82	15	134	45	17	22	14	1.85
1470514--1470629	51	2.2	53	95	3	209	43	18	25	13	1.86
1470619--1470820	19	11.7	19	74	19	201	15	21	17	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1470625--1470834	85	2.5	87	82	9	279	14	21	18	46	1.84
1470619--1470792	52	3.3	52	96	0	321	15	22	16	45	1.85
1470625--1470834	33	6.2	33	76	13	221	14	21	18	46	1.84
1473298--1473344	24	2.0	24	87	8	69	38	21	14	25	1.92
1474025--1474294	20	13.5	20	86	1	281	20	17	25	37	1.94
1475394--1475424	2	16.0	2	93	6	55	48	0	0	51	1.00
1475433--1475476	23	1.9	23	86	9	63	38	4	0	56	1.20
1476862--1476906	17	2.6	17	78	21	58	44	2	6	46	1.42
1479847--1480341	133	3.7	133	86	2	667	30	17	22	29	1.97
1481623--1481696	35	2.0	38	84	10	100	25	18	22	32	1.97
1490948--1491275	174	1.9	176	89	2	509	35	14	15	34	1.88
1494587--1494691	42	2.5	41	78	3	111	25	21	20	32	1.97
1495938--1496012	39	2.0	38	87	7	109	25	16	24	34	1.95
1496618--1496684	16	4.3	16	86	3	93	61	14	10	13	1.57
1496626--1496686	32	1.9	32	93	0	104	57	18	13	11	1.65
1497420--1497494	24	3.1	24	84	3	89	54	20	12	13	1.70
1497464--1497495	14	2.3	14	94	0	55	53	28	12	6	1.62
1498366--1498463	44	2.2	44	82	10	112	29	25	19	25	1.98
1499621--1499675	22	2.5	22	100	0	110	60	3	7	29	1.41
1500511--1500572	7	9.0	7	87	3	63	3	20	0	75	0.94
1500511--1500576	14	4.6	14	86	1	78	3	21	0	75	0.93
1500495--1500556	21	3.1	21	84	9	76	1	20	0	77	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1500511--1500581	21	3.3	21	86	2	79	4	22	0	73	1.01
1506673--1506721	20	2.5	20	96	0	89	30	32	16	20	1.94
1506734--1506893	65	2.5	63	83	9	189	31	23	16	28	1.96
1506865--1506913	19	2.6	19	84	9	57	24	30	18	26	1.98
1512680--1512777	44	2.2	44	82	10	112	29	25	19	25	1.98
1513929--1513984	11	5.1	11	71	16	53	58	1	7	32	1.35
1513930--1513984	22	2.5	22	96	0	101	60	1	7	30	1.35
1514795--1514923	6	21.2	6	86	10	158	2	13	0	83	0.74
1514790--1514926	45	3.0	43	78	15	141	2	14	0	83	0.75
1514799--1514906	1	108.0	1	71	0	81	0	12	0	86	0.63
1526639--1526691	23	2.4	22	78	6	54	26	26	22	24	2.00
1528199--1528246	25	2.0	24	83	4	60	10	45	12	31	1.76
1529495--1529537	19	2.4	19	84	7	54	23	30	18	27	1.98
1530363--1530779	207	2.0	208	98	1	802	29	20	20	30	1.97
1531549--1531607	29	2.0	30	83	9	77	61	3	6	28	1.38
1532874--1532944	3	24.3	3	76	11	67	57	0	1	40	1.07
1532895--1532949	18	3.1	18	87	12	87	56	0	0	43	0.99
1532918--1532950	15	2.2	15	94	0	57	57	0	0	42	0.98
1533103--1533360	76	3.4	76	94	0	444	35	22	18	23	1.96
1533103--1533848	152	4.7	152	73	15	675	36	20	17	26	1.94
1533484--1533848	76	4.8	76	94	0	640	35	21	18	23	1.96
1544775--1544833	29	2.0	30	83	9	77	61	3	6	28	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1545056--1545094	2	19.5	2	94	0	69	53	0	0	46	1.00
1546152--1546225	3	25.3	3	77	10	73	58	0	1	40	1.07
1546199--1546231	15	2.2	15	94	0	57	57	0	0	42	0.98
1546383--1546640	76	3.4	76	91	2	403	34	22	17	25	1.96
1546764--1547128	76	4.8	76	93	0	613	35	21	18	23	1.95
1546764--1547128	153	2.4	153	93	0	615	35	21	18	23	1.95
1551248--1551310	3	20.3	3	77	9	56	57	1	0	41	1.08
1551248--1551310	18	3.4	19	84	6	76	57	1	0	41	1.08
1551251--1551315	19	3.6	17	77	20	62	55	1	0	43	1.09
1551284--1551316	15	2.2	15	94	0	57	57	0	0	42	0.98
1551797--1551839	21	2.0	22	81	4	52	11	18	11	58	1.63
1553372--1553773	200	2.0	200	92	1	664	38	17	11	32	1.86
1555988--1556109	62	2.0	62	95	0	217	31	14	14	38	1.87
1557238--1557263	9	2.9	9	100	0	52	19	0	0	80	0.71
1558989--1559126	45	3.0	44	81	9	152	25	23	6	44	1.77
1559580--1560055	59	8.1	59	88	1	670	34	19	12	33	1.89
1566214--1566256	20	2.2	20	86	0	59	34	20	13	30	1.92
1573895--1573954	26	2.3	26	88	2	86	40	25	11	23	1.88
1580042--1580249	110	1.9	109	80	6	242	49	15	15	19	1.80
1581518--1581556	21	2.0	20	85	10	53	15	23	41	20	1.90
1584059--1584097	20	2.0	20	84	0	51	23	7	23	46	1.78
1584271--1584320	23	2.3	23	86	6	77	18	22	42	18	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1592085--1592131	6	7.8	6	85	0	67	17	10	65	6	1.43
1592087--1592131	12	3.8	12	100	0	90	15	8	68	6	1.36
1594067--1594091	12	2.1	12	100	0	50	24	8	0	68	1.16
1594217--1594273	22	2.5	24	80	11	66	31	3	1	63	1.22
1594393--1594448	20	2.9	19	75	19	62	21	8	1	67	1.27
1598130--1598194	25	2.6	25	74	11	71	75	6	15	3	1.12
1598995--1599057	24	2.8	21	77	13	63	33	11	6	49	1.64
1599784--1601046	106	11.9	106	91	0	1927	33	25	17	23	1.96
1601802--1601895	37	2.5	37	89	0	134	40	15	12	30	1.85
1602293--1602349	18	2.9	19	82	10	62	31	0	3	64	1.10
1602367--1602417	23	2.2	24	82	3	59	31	3	0	64	1.11
1602540--1602670	11	11.5	11	71	16	58	29	3	0	67	1.11
1602551--1602665	23	4.9	24	70	28	88	30	3	0	65	1.15
1602605--1602670	13	5.8	12	80	20	63	28	1	0	69	0.97
1602604--1602668	28	2.3	29	79	12	82	27	1	0	70	0.96
1604250--1604291	13	3.5	12	81	9	50	4	42	0	52	1.22
1606738--1606783	22	2.1	22	91	0	74	17	34	13	34	1.88
1614163--1614207	22	2.0	22	95	0	81	46	4	33	15	1.66
1614170--1614216	22	2.1	22	84	7	60	51	6	23	19	1.70
1619873--1619949	21	3.7	21	92	0	127	25	33	11	28	1.91
1621037--1621179	47	2.9	48	74	12	139	38	11	10	39	1.77
1622997--1623350	5	70.8	5	67	21	90	72	1	8	17	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1623053--1623207	49	3.1	47	75	17	138	71	0	11	16	1.18
1623069--1623207	38	3.9	38	70	24	90	72	0	10	16	1.11
1623071--1623159	12	7.8	12	71	18	57	70	0	12	16	1.16
1623096--1623270	66	2.5	70	77	15	186	71	0	8	20	1.11
1623155--1623552	4	97.0	4	66	20	80	68	1	4	26	1.15
1622997--1623350	9	38.4	9	67	24	115	72	1	8	17	1.14
1623140--1623336	50	3.8	50	72	15	127	72	1	7	18	1.14
1623224--1623341	34	3.3	34	78	12	103	75	1	5	16	1.08
1623369--1623537	9	17.4	10	71	19	94	62	0	1	35	1.07
1623439--1623560	15	7.9	15	78	19	96	64	0	0	34	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18