genome.fa.s8426.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008426.1 Hibiscus syriacus cultivar Beakdansim tig00111210_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4445546

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  18  of  18  ( 2101 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4260783--4260991	110	1.9	110	90	3	332	19	37	5	37	1.75
4266483--4266516	14	2.4	14	90	0	50	20	32	11	35	1.89
4266509--4266558	20	2.5	19	81	9	64	16	14	8	62	1.54
4269048--4269111	6	11.2	6	86	9	82	81	0	18	0	0.70
4269047--4269120	12	6.2	12	76	20	75	79	0	20	0	0.73
4269041--4269109	19	3.8	18	79	14	70	82	0	17	0	0.67
4271068--4272108	139	7.5	139	87	2	1486	34	17	21	26	1.95
4271077--4272108	415	2.5	415	89	3	1560	34	17	21	26	1.95
4272020--4272368	122	2.9	117	83	5	432	39	15	19	26	1.91
4272020--4272347	117	2.7	120	83	6	407	39	15	19	25	1.90
4272396--4272534	43	3.2	41	78	7	125	29	13	16	40	1.87
4272396--4272554	43	3.7	43	77	2	113	30	13	16	38	1.88
4275105--4276406	81	16.1	81	88	0	1852	32	21	11	35	1.88
4283339--4283750	81	5.1	81	91	1	632	30	21	10	37	1.87
4286799--4286853	23	2.4	24	82	11	62	38	9	5	47	1.58
4286808--4286855	24	2.0	24	88	8	71	39	6	6	47	1.54
4288482--4288506	8	3.1	8	100	0	50	76	0	24	0	0.80
4292253--4292277	8	3.1	8	100	0	50	76	0	24	0	0.80
4309690--4310341	81	8.1	80	88	1	896	31	21	10	36	1.88
4309748--4310341	322	1.8	322	91	0	974	31	21	11	35	1.89
4310489--4310708	55	4.0	55	85	5	268	30	20	12	36	1.89
4318877--4319130	124	2.0	124	97	1	483	34	13	6	45	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4322161--4322202	20	2.1	20	90	0	66	19	4	4	71	1.22
4322266--4322330	25	2.9	21	72	16	58	26	6	20	47	1.73
4322274--4322360	43	2.0	45	84	6	115	29	8	16	45	1.75
4324481--4324548	27	2.5	27	78	4	75	45	19	13	22	1.84
4327072--4327176	33	3.2	33	75	13	108	27	23	16	32	1.96
4329361--4329393	12	2.6	13	90	4	50	48	0	0	51	1.00
4330834--4330858	13	1.9	13	100	0	50	40	8	24	28	1.83
4333000--4333312	75	4.2	76	82	5	350	42	10	14	33	1.79
4333000--4333313	150	2.1	151	86	3	427	42	10	14	33	1.79
4333308--4333378	23	3.1	23	80	9	92	39	12	15	32	1.85
4333462--4333502	21	2.0	20	90	4	64	46	9	7	36	1.65
4333595--4333666	23	3.1	23	84	4	83	37	13	13	34	1.85
4337998--4338064	34	2.0	33	85	8	91	61	13	2	22	1.46
4340369--4340414	9	5.3	9	82	10	60	67	0	0	32	0.91
4345848--4345898	19	2.6	20	87	3	68	45	5	13	35	1.68
4349952--4350019	27	2.6	27	95	4	122	30	11	16	41	1.84
4362735--4363376	321	2.0	321	97	0	1203	34	17	18	30	1.94
4364711--4364746	13	2.8	13	91	0	54	36	2	8	52	1.46
4365244--4365300	23	2.5	23	77	2	62	15	19	12	52	1.74
4375508--4375574	2	33.5	2	100	0	134	49	0	0	50	1.00
4383665--4383690	13	2.0	13	100	0	52	23	30	7	38	1.83
4392594--4392681	35	2.5	36	90	1	142	30	37	3	28	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4393134--4393170	17	2.2	17	90	9	58	81	2	10	5	0.96
4397106--4397193	35	2.5	36	88	1	133	30	36	3	29	1.74
4406216--4406262	24	1.9	25	87	12	71	2	17	4	76	1.04
4406503--4406527	12	2.1	12	100	0	50	64	0	16	20	1.30
4407018--4407072	21	2.6	21	88	0	74	45	3	12	38	1.60
4407036--4407081	21	2.3	20	85	7	58	50	0	13	36	1.41
4409226--4409297	36	2.0	36	91	0	117	22	19	9	48	1.77
4410601--4410625	12	2.1	12	100	0	50	64	0	16	20	1.30
4411167--4411208	20	2.2	20	95	4	77	45	4	11	38	1.62
4418169--4418229	23	2.7	22	87	9	88	85	9	3	1	0.78
4418169--4418220	1	52.0	1	80	0	50	88	7	1	1	0.66
4418169--4418220	12	4.4	12	85	4	79	88	7	1	1	0.66
4425492--4425551	25	2.4	25	91	0	102	35	20	16	28	1.94
4426634--4426663	14	2.1	14	100	0	60	16	36	26	20	1.93
4440684--4440716	16	2.0	17	94	5	59	78	6	9	6	1.08
4440705--4440747	18	2.4	18	92	0	68	72	4	16	6	1.24
4440688--4440748	18	3.8	15	77	14	50	73	6	13	6	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18

The End!