genome.fa.s8426.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008426.1 Hibiscus syriacus cultivar Beakdansim tig00111210_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4445546

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  6  of  18  ( 2101 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
986025--986091	33	2.0	33	97	0	125	23	46	0	29	1.53
986125--986168	21	2.1	21	95	0	79	13	34	11	40	1.81
986554--986608	24	2.5	22	81	18	62	49	1	0	49	1.11
988567--989419	182	4.7	182	89	0	1262	27	16	13	41	1.87
989519--989601	37	2.2	37	91	2	139	44	14	2	38	1.58
990222--990256	17	1.9	19	88	11	56	28	0	2	68	1.04
993961--994078	21	5.6	21	75	15	127	18	19	27	34	1.95
993965--994103	42	3.3	42	96	0	260	19	18	25	35	1.95
993986--994099	21	5.4	21	73	15	110	19	18	24	37	1.94
994849--994962	21	5.4	21	73	15	110	37	24	18	19	1.94
994845--994983	42	3.3	42	96	0	260	35	25	18	19	1.95
994870--994987	21	5.6	21	75	15	127	34	27	19	18	1.95
995725--995811	43	2.0	43	97	0	165	28	24	20	26	1.99
998309--998371	23	2.7	23	82	0	81	17	23	28	30	1.97
1011199--1011445	83	3.0	83	86	2	347	40	5	10	44	1.61
1012181--1012216	19	1.9	19	88	5	56	63	5	13	16	1.47
1036827--1036865	20	1.9	21	94	5	71	38	17	20	23	1.93
1040229--1040300	30	2.4	30	86	2	92	33	30	19	16	1.94
1041525--1041577	20	2.7	20	96	0	97	28	22	20	28	1.99
1043502--1043532	14	2.2	14	94	0	53	58	3	0	38	1.15
1043505--1043559	22	2.5	22	80	11	60	56	3	0	40	1.17
1054104--1054146	17	2.6	17	81	3	52	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1056046--1056166	64	1.9	64	84	1	163	26	19	26	28	1.98
1056485--1057301	215	3.8	216	93	1	1375	49	8	12	29	1.70
1057329--1057403	22	3.4	22	83	12	109	45	2	5	46	1.40
1057395--1057455	27	2.2	28	88	2	88	47	8	4	39	1.55
1057644--1057712	29	2.4	29	83	11	88	39	5	0	55	1.24
1057694--1057781	31	2.9	30	80	9	90	40	6	5	46	1.54
1057777--1057846	20	3.6	20	66	14	56	38	5	11	44	1.64
1057780--1057893	33	3.3	32	77	18	106	40	7	9	42	1.67
1057867--1057928	24	2.6	25	82	12	76	38	8	9	43	1.67
1057921--1058007	2	40.0	2	72	19	59	44	4	4	45	1.44
1057921--1058007	7	13.3	6	77	13	59	44	4	4	45	1.44
1057921--1058007	9	10.0	8	74	16	59	44	4	4	45	1.44
1057921--1058007	20	4.3	20	78	10	88	44	4	4	45	1.44
1057884--1057999	40	2.9	39	82	8	137	42	6	5	46	1.50
1057921--1058029	40	3.0	36	84	8	105	44	5	4	44	1.47
1058079--1058116	16	2.5	15	91	4	58	44	5	10	39	1.61
1058051--1058204	33	4.6	31	72	27	93	44	7	7	41	1.59
1058113--1058290	44	4.1	42	72	22	154	43	7	6	42	1.59
1058051--1058204	68	2.3	67	84	8	190	44	7	7	41	1.59
1058143--1058290	51	3.0	51	80	13	202	43	6	7	41	1.59
1058077--1058220	18	8.3	18	73	11	122	45	6	6	40	1.58
1058210--1058278	20	3.2	20	64	28	52	39	5	8	46	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1058208--1058280	22	3.3	22	70	14	78	39	5	8	46	1.57
1059548--1059576	14	2.0	15	93	6	51	13	0	55	31	1.39
1060866--1060900	18	2.1	16	89	10	52	57	2	0	40	1.14
1068526--1068741	91	2.4	91	83	8	260	41	7	19	31	1.79
1068526--1068741	47	4.8	45	84	7	249	41	7	19	31	1.79
1070931--1070973	22	2.0	22	85	0	59	32	16	23	27	1.96
1071529--1072082	81	6.9	81	86	4	699	33	19	11	35	1.88
1071529--1072084	161	3.4	162	86	2	755	33	19	11	35	1.88
1074121--1074187	21	3.1	21	68	4	62	23	19	25	31	1.98
1077790--1077823	16	2.1	16	88	0	50	70	2	14	11	1.27
1079547--1079592	18	2.6	19	80	16	55	58	4	15	21	1.54
1085028--1085136	46	2.4	46	83	7	127	28	23	23	23	2.00
1085062--1085136	23	3.3	23	90	1	125	28	25	26	20	1.99
1085122--1085179	21	2.8	21	80	15	66	34	29	13	22	1.93
1085412--1085448	2	18.5	2	100	0	74	51	0	0	48	1.00
1085885--1085928	22	2.0	23	86	4	63	50	27	0	22	1.50
1091928--1091972	23	2.0	23	91	4	74	33	26	22	17	1.96
1100528--1100558	16	1.9	16	93	0	53	51	9	12	25	1.70
1103409--1103485	23	3.5	22	73	7	75	28	25	19	25	1.99
1105343--1105373	8	3.9	8	95	0	53	16	0	32	51	1.44
1108190--1108245	21	2.7	21	91	0	85	26	17	25	30	1.97
1111121--1111755	143	4.4	140	82	6	679	35	17	13	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1111193--1111747	285	1.9	286	84	4	735	36	16	12	34	1.87
1116383--1116544	81	2.0	81	100	0	324	27	23	16	33	1.95
1120016--1120048	16	2.1	16	100	0	66	57	24	12	6	1.57
1120106--1120145	14	2.9	14	85	3	55	57	27	12	2	1.48
1120378--1120433	24	2.2	26	90	9	98	53	16	12	17	1.73
1120379--1120434	14	4.1	14	78	21	66	53	16	14	16	1.73
1133333--1133600	43	6.2	43	81	7	267	47	7	17	27	1.74
1133315--1133600	86	3.3	85	84	4	331	46	7	17	27	1.75
1133361--1133736	129	3.0	129	78	9	348	50	6	15	27	1.68
1133333--1133702	43	8.7	43	75	12	250	49	6	16	27	1.69
1133477--1133729	85	3.1	80	79	11	219	52	5	14	27	1.64
1133609--1133729	40	2.9	39	77	12	125	55	4	12	28	1.55
1133507--1133733	123	1.8	123	79	7	264	53	5	12	28	1.60
1137139--1137219	31	2.7	30	84	3	108	29	13	28	28	1.94
1141398--1141428	15	2.1	15	93	0	53	32	0	3	64	1.09
1144827--1145199	183	2.0	186	97	1	707	32	14	15	37	1.88
1147030--1147076	23	2.0	23	91	0	76	44	21	4	29	1.71
1148211--1148271	28	2.2	28	87	0	95	42	6	11	39	1.67
1148217--1148266	12	3.8	12	76	19	55	42	8	10	40	1.68
1148239--1148426	35	5.3	35	84	4	234	40	5	12	41	1.67
1148245--1148419	72	2.5	71	86	5	237	41	6	10	41	1.65
1148454--1148610	8	20.5	8	80	15	79	39	2	1	56	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1148518--1148611	14	7.2	12	87	12	84	41	0	0	58	0.98
1148518--1148568	3	17.3	3	88	11	79	35	0	0	64	0.94
1148518--1148611	16	6.1	17	87	12	102	41	0	0	58	0.98
1148518--1148568	17	2.9	17	94	5	84	35	0	0	64	0.94
1148519--1148610	6	17.5	6	77	22	93	42	0	0	57	0.98
1148519--1148610	20	5.2	20	77	22	93	42	0	0	57	0.98
1150651--1150716	20	3.3	20	93	0	114	43	22	16	16	1.87
1151228--1151285	20	3.2	20	65	27	56	51	25	13	8	1.70
1151240--1151273	14	2.4	14	85	0	50	50	26	14	8	1.72
1151314--1151347	14	2.4	14	90	0	50	8	17	20	52	1.71
1151286--1151362	20	4.2	20	75	20	87	10	18	23	48	1.78
1151330--1151373	20	2.2	20	83	0	52	13	18	18	50	1.79
1153467--1153543	21	3.6	23	78	18	87	22	29	22	25	1.99
1154896--1155054	64	2.4	65	95	2	284	29	1	17	50	1.56
1155147--1155191	20	2.2	20	92	0	72	33	24	20	22	1.97
1155113--1155242	54	2.4	54	88	2	190	30	19	22	28	1.98
1155209--1155282	20	3.7	20	92	0	112	40	18	20	20	1.92
1156447--1156483	18	2.1	18	89	0	56	51	10	5	32	1.60
1159203--1159241	16	2.6	15	84	11	53	66	0	5	28	1.12
1159378--1159424	18	2.6	18	82	3	58	31	14	23	29	1.95
1159398--1159504	41	2.7	40	81	4	119	27	12	25	35	1.91
1159397--1159508	20	5.7	20	75	10	97	25	11	25	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1159588--1159711	60	2.1	60	89	0	185	26	14	24	34	1.94
1160973--1161012	19	2.1	19	85	4	53	47	0	2	50	1.14
1160984--1161020	17	2.1	18	90	5	58	45	0	0	54	1.00
1161276--1161306	16	2.0	16	93	6	55	54	0	0	45	0.99
1161276--1161308	15	2.3	15	89	5	50	57	0	0	42	0.98
1161286--1161356	34	2.2	33	82	10	83	52	0	2	45	1.15
1162770--1162810	7	6.3	7	86	13	61	70	0	0	29	0.87
1162770--1162810	19	2.1	20	95	4	75	70	0	0	29	0.87
1163099--1163711	123	5.0	123	90	2	921	25	18	15	41	1.89
1164158--1164266	22	5.0	22	89	0	146	37	12	12	36	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18