genome.fa.s8426.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008426.1 Hibiscus syriacus cultivar Beakdansim tig00111210_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4445546

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  2  of  18  ( 2101 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
201827--201903	39	2.0	39	97	0	145	29	7	33	28	1.85
201975--202093	36	3.0	36	77	21	139	15	36	24	23	1.94
201994--202082	46	1.9	46	100	0	178	14	33	24	26	1.94
202074--202140	29	2.3	29	84	0	80	7	31	32	28	1.85
205692--205730	17	2.2	18	86	13	55	46	0	23	30	1.53
206823--206871	25	2.0	25	91	0	80	34	20	18	26	1.95
212436--212553	59	2.0	60	81	8	143	32	23	5	38	1.79
213190--213215	2	13.0	2	100	0	52	50	0	0	50	1.00
217616--217761	77	1.9	77	88	0	220	28	25	21	24	1.99
221157--221311	65	2.3	68	79	11	169	40	5	8	45	1.58
231475--231669	44	4.4	44	96	2	338	31	22	7	38	1.82
231526--231597	24	3.2	24	62	34	59	27	20	11	40	1.87
232945--232978	14	2.4	14	100	0	68	23	8	20	47	1.78
234267--234301	3	11.7	3	100	0	70	68	0	0	31	0.90
236581--236638	30	1.9	31	86	6	84	22	10	6	60	1.53
240457--240515	16	3.9	15	78	8	66	77	1	16	3	0.98
240477--240519	17	2.5	18	81	11	63	81	0	16	2	0.79
240457--240579	22	5.5	22	75	12	99	75	1	19	3	1.02
244999--245049	16	3.2	16	79	17	54	13	1	3	80	0.94
245029--245062	9	3.9	9	92	3	52	20	2	0	76	0.92
245021--245070	22	2.3	22	78	0	55	18	2	4	76	1.04
247952--248508	203	2.7	202	84	1	738	34	16	19	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
248642--248822	42	4.3	41	87	2	213	31	22	15	30	1.95
248677--248746	23	3.2	23	62	22	60	35	21	14	28	1.92
248642--248822	84	2.2	81	86	4	236	31	22	15	30	1.95
248642--248857	42	5.3	40	84	5	166	30	23	17	29	1.97
250904--250982	18	4.4	18	88	0	104	17	22	30	29	1.97
252244--252280	2	18.5	2	100	0	74	51	0	0	48	1.00
255111--255192	18	4.6	18	93	0	119	13	24	35	26	1.92
256265--256334	36	1.9	36	85	5	97	20	7	32	40	1.79
258736--258777	13	2.9	15	80	13	52	28	16	9	45	1.79
260415--260445	2	15.5	2	100	0	62	51	0	0	48	1.00
260650--260705	28	2.0	28	100	0	112	32	7	17	42	1.77
261022--261054	15	2.2	15	89	10	50	66	3	0	30	1.06
261392--261429	2	19.0	2	100	0	76	50	0	0	50	1.00
265082--265116	11	3.0	11	91	8	52	37	2	0	60	1.12
265537--265569	11	3.0	11	95	0	57	45	27	3	24	1.68
272324--272720	66	6.0	66	92	2	647	27	17	13	41	1.87
272332--272724	30	11.8	36	69	20	232	27	16	13	41	1.87
272324--272720	130	3.0	132	90	3	631	27	17	13	41	1.87
277743--277772	15	2.0	15	100	0	60	33	0	0	66	0.92
278678--278729	26	2.0	25	85	10	70	34	3	5	55	1.42
279513--279774	134	1.9	136	93	3	449	46	5	6	40	1.54
282227--282269	22	2.0	22	85	0	59	30	20	0	48	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
282341--282377	16	2.5	14	87	12	56	43	0	0	56	0.99
282594--282622	15	1.9	15	100	0	58	41	10	20	27	1.85
283393--283431	14	2.8	14	88	7	53	61	5	12	20	1.50
288435--288476	21	2.0	21	95	0	75	16	14	26	42	1.86
288974--289122	73	2.0	75	93	2	257	36	18	9	36	1.83
290019--290060	20	2.1	20	90	0	66	57	23	11	7	1.59
292273--292376	32	3.3	31	77	10	93	26	11	20	41	1.86
293556--293598	22	2.0	21	86	8	61	34	13	11	39	1.82
295056--295107	23	2.3	23	89	0	77	44	21	7	26	1.79
298979--299047	23	3.0	23	89	0	102	26	26	27	20	1.99
299063--299278	103	2.1	103	95	0	387	37	23	13	25	1.92
304188--304256	23	3.0	23	89	0	102	26	26	27	20	1.99
304272--304489	103	2.1	103	98	0	418	37	23	13	25	1.91
308086--308128	20	2.2	20	83	8	52	55	4	16	23	1.59
311003--311027	2	12.5	2	100	0	50	52	48	0	0	1.00
312462--312504	20	2.2	20	83	8	52	55	2	16	25	1.53
316003--316056	26	2.1	26	89	0	81	35	27	12	24	1.92
318897--318921	13	1.9	13	100	0	50	52	16	0	32	1.44
318906--318967	19	3.2	18	78	13	61	51	3	0	45	1.17
319083--319159	33	2.4	33	84	2	102	19	12	24	42	1.86
321184--321208	7	3.6	7	100	0	50	44	0	0	56	0.99
324333--324383	20	2.4	21	75	15	52	29	17	1	50	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
341067--341093	10	2.7	10	100	0	54	29	0	18	51	1.46
344425--344460	6	6.0	6	100	0	72	16	0	50	33	1.46
346930--347089	87	1.8	87	82	7	209	28	14	22	35	1.93
350533--350842	152	2.0	152	93	4	538	51	12	12	23	1.73
353731--353824	48	2.0	48	95	0	170	42	9	18	29	1.82
354033--354101	26	2.6	27	93	4	122	37	11	8	42	1.72
356869--356906	13	3.1	13	81	11	53	15	13	15	55	1.70
357057--357086	13	2.3	13	94	0	51	33	16	26	23	1.96
362536--364525	51	38.2	51	83	6	2021	31	17	26	23	1.97
362530--364525	210	9.6	209	91	2	2383	31	17	26	23	1.97
362536--364525	261	7.7	258	84	6	1958	31	17	26	23	1.97
362536--364514	471	4.2	468	88	3	2486	31	18	26	23	1.97
364531--364770	109	2.2	112	88	3	353	32	14	25	28	1.95
364508--364770	54	4.8	55	84	9	322	31	13	24	30	1.94
364508--364770	55	4.8	55	84	8	304	31	13	24	30	1.94
368656--368707	20	2.7	18	75	18	52	34	0	25	40	1.56
370443--370564	40	3.0	40	96	0	226	22	17	26	33	1.96
370669--370786	47	2.6	44	81	7	146	37	8	22	32	1.84
375031--375077	19	2.6	18	75	18	60	40	17	2	40	1.61
378278--378315	2	19.0	2	100	0	76	50	0	0	50	1.00
380253--380282	13	2.2	14	94	5	53	23	30	30	16	1.96
380272--380329	17	3.4	17	97	0	107	15	24	43	17	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380253--380282	7	4.4	7	91	8	53	23	30	30	16	1.96
380323--380390	19	3.5	19	88	6	93	27	27	25	19	1.98
380344--380390	9	4.8	10	77	12	53	31	29	21	17	1.96
394420--394446	13	2.1	13	100	0	54	37	0	0	62	0.95
394617--394647	2	15.5	2	100	0	62	48	0	0	51	1.00
395973--396038	25	2.6	25	100	0	132	22	13	7	56	1.63
396023--396054	16	2.0	16	100	0	64	31	6	6	56	1.49
401709--401836	51	2.5	50	81	9	134	14	35	28	21	1.93
402072--402112	18	2.3	18	91	4	66	29	4	2	63	1.28
403793--403832	18	2.2	18	90	0	62	25	32	20	22	1.98
404055--404079	9	2.8	9	100	0	50	12	28	12	48	1.76
404319--404390	23	3.0	24	73	21	69	25	6	2	65	1.31
410410--410458	16	3.3	15	75	8	55	59	4	0	36	1.17
410409--410458	15	3.2	16	72	8	50	60	4	0	36	1.16
410822--411196	20	18.6	20	71	13	173	30	25	12	31	1.93
410820--411144	143	2.3	142	81	4	359	30	25	12	31	1.93
411168--411216	18	2.6	19	83	9	64	30	24	8	36	1.85
411940--411973	12	2.8	12	90	0	50	55	29	0	14	1.40
414417--414452	18	2.0	18	88	0	54	55	22	2	19	1.56
414697--414744	20	2.4	20	82	0	60	50	22	14	12	1.77
416273--416313	21	2.0	21	95	0	73	24	14	41	19	1.89
416334--416380	21	2.2	21	84	0	58	31	10	34	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416681--416777	42	2.3	43	77	8	110	37	32	9	20	1.85
416682--416823	21	6.8	21	67	15	87	35	33	10	20	1.87
416794--416843	21	2.4	21	82	0	55	36	30	14	20	1.91
416683--416834	63	2.4	63	78	6	164	35	34	10	19	1.86
416958--417061	42	2.5	42	82	6	113	16	22	33	27	1.95
416993--417056	21	3.0	22	71	17	71	12	25	34	28	1.92
418563--418636	20	3.7	20	79	1	67	51	13	12	22	1.74
418639--418701	20	3.5	19	73	24	64	14	14	22	49	1.79
418650--418683	14	2.4	14	90	0	50	11	17	23	47	1.81
419039--419089	22	2.3	22	93	0	84	15	19	47	17	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18