genome.fa.s8426.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008426.1 Hibiscus syriacus cultivar Beakdansim tig00111210_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4445546

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  3  of  18  ( 2101 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
419184--419233	26	1.9	26	83	0	64	36	14	18	32	1.90
419202--419239	20	2.0	20	84	5	51	44	13	15	26	1.83
420217--420254	14	2.7	15	80	16	53	26	0	5	68	1.11
420235--420274	20	2.0	21	95	5	73	27	0	5	67	1.11
421892--422043	54	2.8	53	84	6	196	43	5	15	35	1.70
425424--425449	13	2.0	13	100	0	52	61	0	30	7	1.24
430434--430493	21	2.9	21	97	0	111	20	26	20	33	1.97
431530--431573	22	2.2	20	84	12	54	29	40	0	29	1.57
448453--448499	19	2.4	19	89	7	67	65	0	17	17	1.27
453677--453742	23	2.9	23	79	2	62	48	10	18	22	1.78
453900--453934	14	2.3	15	90	9	54	37	2	0	60	1.12
454903--454927	12	2.1	12	100	0	50	40	20	24	16	1.91
456501--456553	14	3.6	14	87	9	79	0	41	5	52	1.25
456504--456553	16	3.2	16	88	5	68	0	42	6	52	1.26
456511--456557	16	3.1	16	90	6	71	0	46	6	46	1.28
457029--457058	12	2.5	12	94	0	51	80	6	0	13	0.91
457186--457922	117	6.4	117	87	1	957	25	20	16	37	1.93
457196--457919	348	2.1	346	86	2	1013	25	21	16	37	1.93
457186--457922	231	3.2	229	85	3	949	25	20	16	37	1.93
458225--458567	36	9.3	36	67	7	188	38	12	18	30	1.88
458168--458576	75	5.5	73	81	7	407	36	12	18	31	1.89
460097--460214	5	23.2	5	65	24	52	0	18	2	77	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
460128--460222	12	8.4	11	72	18	61	2	16	2	78	0.94
460128--460212	21	4.3	20	78	8	86	1	16	2	80	0.89
460123--460203	31	2.6	31	80	16	96	1	17	2	79	0.92
460137--460232	45	2.2	45	81	12	110	3	15	3	78	1.01
460125--460232	21	5.0	21	75	17	80	2	16	2	77	1.00
461798--462089	149	2.0	149	88	0	431	20	25	17	36	1.94
466639--466824	35	5.3	34	88	1	264	31	20	23	24	1.98
468329--468433	51	2.1	50	83	1	129	17	33	30	19	1.94
468479--468601	49	2.5	51	89	5	189	24	24	23	27	2.00
473737--473948	109	1.9	110	93	0	363	47	8	8	34	1.65
474072--474103	10	3.2	10	100	0	64	40	0	31	28	1.57
476916--476949	6	6.0	6	96	3	54	0	17	52	29	1.45
479828--480157	137	2.5	133	81	9	361	43	5	13	36	1.68
480038--480198	73	2.3	74	80	7	190	44	5	13	36	1.68
480481--480699	71	3.1	69	72	13	176	35	14	7	42	1.75
480512--480713	71	2.9	68	73	13	187	35	12	7	43	1.72
483775--483813	16	2.4	17	83	8	55	51	0	2	46	1.14
484424--484463	11	3.6	12	80	12	50	67	0	2	30	1.04
485101--485158	29	2.0	29	89	0	89	51	5	3	39	1.41
485436--485504	24	2.9	24	75	14	72	44	1	1	52	1.19
493613--493644	2	16.0	2	100	0	64	50	0	0	50	1.00
493713--493742	11	2.8	11	95	5	53	16	0	0	83	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
494199--494257	21	2.7	22	76	5	75	22	25	20	32	1.98
494242--494372	20	6.6	20	89	3	131	31	22	19	25	1.98
494184--494372	40	4.7	40	75	9	141	27	24	19	28	1.99
495176--495238	24	2.6	24	82	0	81	23	15	19	41	1.90
497485--497520	18	2.0	18	94	0	63	55	25	2	16	1.55
497818--497955	54	2.6	53	88	1	204	34	26	16	21	1.95
497852--498034	94	1.9	94	84	4	244	35	24	18	22	1.95
497813--497994	20	9.8	20	76	14	165	34	24	17	24	1.96
497852--498035	20	9.8	20	71	19	85	35	23	17	22	1.95
498037--498090	20	2.7	21	85	5	76	11	18	27	42	1.84
498209--498247	14	2.8	14	92	0	60	46	15	0	38	1.46
500305--500352	20	2.4	20	100	0	96	14	20	27	37	1.92
502217--502284	20	3.5	20	83	2	84	51	23	13	11	1.73
502670--502712	22	2.0	22	90	0	68	20	16	39	23	1.92
502886--503020	20	6.7	20	77	6	110	28	20	23	27	1.99
509945--510158	105	2.0	105	89	0	329	22	13	22	42	1.88
511782--511827	24	1.9	24	100	0	92	36	13	13	36	1.83
523337--523372	17	2.1	17	89	0	54	41	5	16	36	1.72
527424--527515	46	2.0	46	97	0	175	22	19	20	36	1.95
533007--533088	24	3.5	24	83	3	112	24	18	21	35	1.96
535194--535218	5	5.0	5	100	0	50	20	60	20	0	1.37
535208--535263	13	4.3	13	86	0	76	17	42	19	19	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
537578--537668	24	3.8	24	85	2	130	26	16	19	37	1.93
537578--537668	47	1.9	48	90	2	148	26	16	19	37	1.93
543196--543230	3	11.7	3	87	0	52	62	2	34	0	1.10
543704--543745	22	1.9	22	85	9	59	42	11	2	42	1.54
544851--544875	12	2.1	12	100	0	50	52	0	0	48	1.00
544896--544936	21	2.0	21	90	0	64	56	0	2	41	1.13
546257--546422	78	2.1	78	93	0	278	34	23	14	27	1.94
547011--547066	20	2.8	20	97	0	103	33	16	21	28	1.95
547159--547208	20	2.5	20	93	0	91	22	14	20	44	1.86
555790--555846	2	29.0	2	96	3	107	49	0	0	50	1.00
558358--558490	24	5.5	24	83	3	142	42	19	11	26	1.85
558372--558508	72	1.9	72	83	5	179	42	19	12	25	1.86
563242--563360	24	5.0	24	90	0	184	38	19	16	25	1.92
565843--565885	17	2.5	17	88	0	68	30	25	25	18	1.98
581104--581135	2	16.0	2	100	0	64	50	0	0	50	1.00
584467--584511	15	3.0	15	100	0	90	33	20	20	26	1.97
595892--595932	21	2.0	21	90	0	64	39	39	12	9	1.76
604002--604052	2	26.5	2	81	15	54	41	3	0	54	1.19
604124--604297	36	4.6	36	79	7	168	45	2	6	45	1.43
604269--604345	29	2.7	29	75	11	72	50	5	1	42	1.32
604240--604403	68	2.4	67	82	12	194	46	3	3	45	1.38
604325--604393	30	2.3	29	85	7	84	46	4	4	44	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
604410--604457	25	2.0	25	83	4	62	35	0	12	52	1.40
609082--609205	58	2.1	58	77	8	126	36	11	16	36	1.84
612214--612282	23	3.0	23	80	0	84	33	26	21	18	1.97
612763--612802	2	20.0	2	100	0	80	50	0	0	50	1.00
613976--614024	19	2.6	19	100	0	98	22	32	16	28	1.95
617373--617441	23	3.0	23	83	8	95	31	26	24	17	1.97
617834--617875	2	21.0	2	100	0	84	50	0	0	50	1.00
617933--617957	2	12.5	2	100	0	50	48	0	0	52	1.00
619029--619066	20	1.9	20	100	0	76	23	23	21	31	1.98
619093--619196	45	2.3	45	80	4	113	28	20	17	33	1.95
620853--620944	32	2.9	31	81	3	103	20	25	29	25	1.99
626654--626784	32	4.1	31	80	3	127	20	27	23	28	1.99
627338--627404	30	2.2	30	86	7	91	31	1	5	61	1.29
629564--629594	13	2.4	13	94	0	53	48	0	0	51	1.00
630415--630439	3	8.3	3	100	0	50	68	32	0	0	0.90
630961--631085	47	2.8	46	84	7	159	31	20	8	40	1.82
640432--640461	14	2.1	15	93	6	53	50	3	13	33	1.58
640579--640631	14	3.8	14	87	0	61	43	20	7	28	1.79
640797--640869	7	10.4	7	83	0	83	47	31	0	20	1.50
640795--640869	21	3.6	21	83	0	96	48	30	0	21	1.51
641678--641726	24	2.1	23	92	3	80	44	2	8	44	1.45
640819--641735	467	2.0	468	88	4	1397	41	12	8	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
641811--641876	7	9.7	7	75	6	55	48	31	0	19	1.49
641811--641876	13	4.9	13	75	5	60	48	31	0	19	1.49
641811--641876	20	3.2	21	76	8	73	48	31	0	19	1.49
642046--642092	14	3.7	14	71	26	50	51	4	0	44	1.21
642044--642093	23	2.1	24	96	3	93	48	4	0	48	1.20
642115--642166	22	2.2	24	90	6	81	38	3	0	57	1.17
642365--642411	16	2.9	16	96	0	85	40	12	23	23	1.89
643708--643732	5	5.0	5	100	0	50	60	0	0	40	0.97
643846--643921	33	2.3	33	81	2	91	40	5	7	46	1.56
643842--644247	195	2.1	196	85	3	548	38	4	8	49	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18