genome.fa.s8426.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008426.1 Hibiscus syriacus cultivar Beakdansim tig00111210_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4445546

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  9  of  18  ( 2101 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1623401--1623560	50	3.0	52	76	18	145	63	1	0	34	1.07
1623438--1623613	15	11.2	15	69	21	71	67	1	2	28	1.15
1623583--1623620	15	2.5	15	83	8	51	78	0	2	18	0.86
1626406--1626520	55	2.1	55	91	0	185	12	24	12	51	1.73
1636750--1637097	9	37.4	9	68	22	100	74	0	8	16	1.09
1636750--1637073	19	16.9	19	68	20	137	74	0	8	16	1.09
1636819--1637103	13	22.9	12	67	18	86	74	0	8	16	1.06
1636978--1637105	30	4.3	29	75	19	88	75	0	8	15	1.03
1636751--1637092	38	9.0	37	71	18	151	73	0	8	16	1.09
1636890--1637110	118	1.9	118	80	5	259	72	0	8	18	1.09
1636861--1637126	24	11.4	22	69	18	89	73	0	8	18	1.08
1637166--1637193	2	14.0	2	100	0	56	50	0	0	50	1.00
1643713--1643742	5	6.0	5	92	0	51	56	0	0	43	0.99
1643926--1643978	16	3.6	15	78	16	58	67	3	1	26	1.17
1643926--1643977	15	3.5	16	80	19	60	67	3	1	26	1.18
1657711--1657845	42	3.3	42	81	2	157	46	21	10	21	1.81
1657732--1657859	40	3.2	39	74	6	121	46	24	7	21	1.77
1659783--1659831	21	2.3	21	89	0	71	20	12	28	38	1.89
1660335--1660390	21	2.7	21	91	0	94	35	0	14	50	1.43
1666796--1666883	23	3.8	23	81	0	95	20	23	23	31	1.98
1668730--1668785	23	2.4	23	81	0	76	17	21	23	37	1.94
1679534--1679578	19	2.4	19	88	0	72	15	24	28	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1680340--1680907	282	2.0	284	97	2	1081	33	11	9	46	1.72
1683078--1683149	35	2.0	36	89	7	112	41	15	8	34	1.77
1683785--1683846	19	3.2	19	73	17	56	33	1	0	64	1.03
1685962--1686013	2	26.5	2	96	3	97	51	0	0	48	1.00
1687651--1688014	55	6.7	55	85	4	438	22	24	18	33	1.97
1687651--1688061	218	1.9	217	82	5	524	23	23	18	35	1.96
1688016--1688351	55	6.1	55	86	2	453	30	24	13	32	1.93
1688016--1688351	163	2.0	162	90	2	494	30	24	13	32	1.93
1688009--1688351	109	3.1	108	87	2	481	30	24	13	32	1.93
1689512--1689543	11	2.9	11	95	0	55	9	12	0	78	0.97
1699080--1699128	25	2.0	25	91	0	80	34	30	6	28	1.82
1705607--1705635	14	2.1	14	100	0	58	20	13	31	34	1.92
1706364--1706402	19	2.0	20	90	5	62	74	0	0	25	0.82
1707947--1708222	132	2.1	132	87	1	392	42	10	20	26	1.85
1707947--1708256	44	7.0	44	82	2	327	41	10	20	27	1.85
1714268--1714310	19	2.2	20	87	4	61	69	13	0	16	1.19
1714718--1714763	23	2.0	24	95	4	85	36	17	26	19	1.94
1714721--1714777	23	2.6	23	86	5	82	36	17	22	22	1.94
1722636--1722669	12	2.9	11	91	8	50	8	8	2	79	1.03
1723337--1723422	43	2.0	43	95	0	154	46	4	20	27	1.71
1724166--1724214	16	3.1	16	84	0	62	51	14	8	26	1.70
1726113--1726207	44	2.2	43	81	7	111	42	1	2	54	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1726538--1726839	150	2.0	150	97	2	570	29	4	28	37	1.77
1728030--1728143	39	2.9	39	76	7	124	38	18	0	42	1.50
1728792--1728816	6	4.2	6	100	0	50	32	0	0	68	0.90
1728860--1728921	29	2.1	29	82	14	74	56	1	3	38	1.25
1730109--1730176	3	23.0	3	96	3	129	33	0	0	66	0.92
1731524--1731579	13	4.3	13	80	6	60	35	3	0	60	1.14
1731516--1731584	20	3.6	19	75	11	54	34	2	0	62	1.10
1731648--1731687	16	2.3	18	83	12	57	57	0	0	42	0.98
1731827--1731907	41	2.0	40	81	11	94	38	0	6	55	1.25
1731733--1731997	140	1.9	139	83	6	349	39	6	7	46	1.57
1731954--1732001	14	3.4	14	76	2	51	56	2	0	41	1.11
1731986--1732031	20	2.2	22	84	7	60	47	2	0	50	1.13
1735797--1735828	15	2.1	15	94	0	55	25	15	6	53	1.65
1762815--1762933	61	2.0	61	89	0	184	29	28	16	25	1.97
1766718--1767017	39	7.7	39	82	5	383	20	23	12	43	1.86
1766718--1767017	78	3.8	78	89	2	451	20	23	12	43	1.86
1767024--1767354	73	4.5	73	93	1	567	39	14	14	31	1.85
1768083--1768166	22	3.8	23	87	7	129	39	13	10	36	1.79
1768525--1768686	54	3.0	54	87	0	225	24	24	15	35	1.94
1768940--1769183	75	3.3	75	88	2	339	30	23	16	29	1.96
1771492--1771556	13	4.9	13	81	12	71	1	18	0	80	0.80
1771506--1771591	7	12.9	7	80	14	60	1	16	0	82	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1771520--1771589	1	70.0	1	72	0	50	1	12	0	85	0.66
1771490--1771589	40	2.5	40	87	8	132	2	16	0	82	0.77
1771486--1771589	12	8.7	12	73	7	95	1	16	0	81	0.77
1775734--1775776	22	2.0	22	90	0	68	58	16	2	23	1.50
1781791--1782330	136	4.0	136	86	1	710	26	20	17	35	1.95
1781791--1782315	271	1.9	271	88	2	795	26	20	17	34	1.95
1788457--1788506	24	2.1	24	85	7	66	60	16	2	22	1.46
1788949--1788982	17	2.0	17	94	0	59	5	26	41	26	1.78
1793059--1793091	14	2.4	14	94	0	57	54	0	12	33	1.37
1795446--1795505	3	20.3	3	76	10	61	71	0	1	26	0.95
1795446--1795524	42	1.9	39	85	7	104	67	1	3	27	1.16
1796767--1796817	3	17.0	3	86	11	61	60	0	0	39	0.97
1797860--1797904	20	2.3	20	80	3	56	46	4	2	46	1.35
1798425--1798480	16	3.5	15	80	9	58	26	21	10	41	1.86
1798619--1798645	13	2.1	13	100	0	54	62	0	0	37	0.95
1799010--1799044	11	3.1	11	84	8	52	48	5	8	37	1.58
1799958--1799992	17	1.9	19	88	11	56	22	25	22	28	1.99
1800892--1801002	35	3.2	35	87	2	152	28	36	3	31	1.75
1804083--1804159	6	12.7	6	79	2	82	7	1	44	46	1.40
1804934--1805013	28	2.8	28	84	9	90	50	1	1	47	1.17
1804916--1805155	43	5.6	42	67	24	130	47	2	3	46	1.32
1804954--1805228	65	4.2	66	75	14	257	47	2	4	45	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1805030--1805230	31	6.3	30	73	20	151	48	3	4	43	1.40
1805093--1805154	14	4.4	14	76	15	56	45	1	6	46	1.38
1805120--1805208	15	5.6	15	71	19	65	49	3	3	43	1.35
1804988--1805249	131	2.0	132	84	6	345	46	3	4	45	1.41
1805204--1805256	21	2.5	21	81	0	70	45	5	7	41	1.56
1805005--1805292	131	2.2	129	81	8	307	46	4	5	43	1.46
1805299--1805402	20	5.0	21	69	22	76	44	7	6	41	1.59
1805299--1805423	59	2.0	62	80	8	141	44	8	7	40	1.61
1805386--1805459	37	2.1	36	84	5	96	39	8	9	43	1.67
1805736--1805775	20	2.0	20	85	0	53	40	12	5	42	1.64
1805761--1805834	37	2.1	36	84	5	96	39	10	9	40	1.73
1806113--1806148	15	2.4	15	95	0	63	41	2	5	50	1.40
1806113--1806263	13	11.7	13	70	22	97	39	3	5	50	1.45
1806065--1806216	75	2.0	74	87	1	214	42	3	4	48	1.42
1806189--1806263	13	5.6	14	85	4	102	37	2	6	53	1.41
1806191--1806257	27	2.5	27	97	0	125	38	2	5	52	1.41
1806283--1806318	18	1.9	19	88	5	56	44	2	5	47	1.41
1808001--1808075	35	2.1	36	95	2	134	22	8	24	45	1.79
1813291--1813403	56	2.0	56	94	0	199	30	6	26	36	1.81
1813529--1813587	29	2.0	29	96	0	109	28	8	23	38	1.84
1816462--1816538	37	2.1	37	80	4	84	29	10	25	33	1.89
1818428--1818487	31	1.9	31	96	0	111	35	23	10	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1818803--1818861	10	5.7	10	78	7	64	71	3	3	22	1.16
1818803--1818860	21	2.8	20	87	7	80	70	3	3	22	1.17
1818803--1818876	31	2.3	34	83	6	100	68	2	5	22	1.23
1819250--1819321	29	2.4	31	74	23	73	41	4	1	52	1.29
1819372--1819439	31	2.2	30	80	12	75	23	5	4	66	1.32
1819392--1819449	21	2.8	20	84	7	71	22	5	3	68	1.24
1819392--1819449	10	5.6	10	84	8	71	22	5	3	68	1.24
1826497--1826567	23	3.2	22	69	21	67	33	25	15	25	1.95
1826500--1826585	44	2.0	44	92	0	145	33	27	16	22	1.95
1828834--1828874	18	2.3	18	95	0	73	41	14	21	21	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18