genome.fa.s8527.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008527.1 Hibiscus syriacus cultivar Beakdansim tig00111402_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9057482

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   

This is table  1  of  37  ( 4336 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12002--12093	2	46.0	2	100	0	184	50	0	0	50	1.00
15436--15474	20	2.1	18	85	9	51	46	2	2	48	1.29
23642--23696	24	2.3	24	84	9	69	63	1	0	34	1.05
26492--26557	25	2.6	26	77	18	68	27	1	1	69	1.06
36204--36228	3	8.3	3	100	0	50	36	0	0	64	0.94
39535--39578	21	2.2	20	83	4	52	54	4	0	40	1.21
43115--43153	16	2.5	16	87	4	53	46	0	2	51	1.14
50206--50361	58	2.7	58	90	0	240	33	16	3	45	1.66
50252--50343	29	3.2	29	63	17	73	36	20	4	38	1.73
50426--50470	2	22.5	2	100	0	90	48	0	0	51	1.00
55550--55595	23	2.0	23	83	8	58	54	0	10	34	1.36
56817--56896	37	2.2	37	95	0	142	32	16	28	22	1.95
60155--60191	18	2.2	18	85	9	51	40	5	5	48	1.49
62490--62593	29	3.5	29	85	7	154	34	16	8	40	1.79
64607--64673	29	2.3	29	94	0	116	50	0	5	43	1.26
67276--67332	24	2.4	24	84	0	87	42	10	22	24	1.85
67456--67590	28	4.9	28	95	1	236	16	7	30	45	1.74
67718--67775	28	2.1	28	93	0	98	12	8	32	46	1.71
68164--68210	18	2.8	16	78	12	58	29	25	6	38	1.81
71118--71161	17	2.7	17	80	19	58	56	0	2	40	1.11
86540--86594	28	1.9	29	92	3	94	40	5	16	38	1.72
90072--90393	117	2.8	116	78	6	366	20	31	22	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93885--93936	20	2.6	20	96	0	95	38	26	13	21	1.90
93926--94024	21	4.8	20	72	6	72	36	23	19	21	1.95
93991--94184	20	9.6	20	81	5	221	35	25	19	19	1.95
93991--94184	60	3.2	60	83	0	253	35	25	19	19	1.95
94566--94636	33	2.2	33	92	0	115	11	22	18	47	1.80
94779--94868	14	5.7	14	74	23	81	8	25	23	42	1.83
94762--94876	33	3.5	33	92	0	194	8	23	22	45	1.80
96575--97046	185	2.5	186	98	1	930	22	12	18	46	1.83
96575--97046	93	5.1	93	99	0	930	22	12	18	46	1.83
97090--97218	19	7.3	19	75	17	125	45	28	17	8	1.77
97126--97218	33	2.8	32	91	4	150	46	27	18	7	1.76
97090--97218	52	2.5	52	74	14	140	45	28	17	8	1.77
97214--97348	19	7.6	19	75	16	128	11	19	23	45	1.82
97236--97292	14	3.7	14	77	20	60	10	21	22	45	1.82
97219--97311	33	2.8	33	95	0	168	10	20	21	47	1.80
99166--99238	38	1.9	38	97	0	137	28	1	16	53	1.51
99161--99225	19	3.4	19	64	8	51	24	1	15	58	1.46
99220--99255	14	2.6	14	95	0	63	33	0	22	44	1.53
99362--99463	19	5.6	19	84	13	151	44	17	23	14	1.86
99492--99817	19	18.4	19	80	15	405	14	20	17	47	1.82
99470--99789	52	6.0	52	94	4	550	14	21	16	46	1.83
99492--99817	71	4.6	72	82	13	389	14	20	17	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99470--99789	161	2.0	157	93	3	552	14	21	16	46	1.83
99511--99817	33	8.8	33	80	12	280	14	20	17	47	1.82
102124--102148	12	2.1	12	100	0	50	0	28	0	72	0.86
103043--103411	20	18.5	20	86	4	458	20	18	26	34	1.96
117209--117301	21	4.5	21	78	4	100	39	18	24	17	1.91
117209--117301	41	2.3	41	100	0	186	39	18	24	17	1.91
117228--117362	41	3.3	41	84	4	148	37	21	20	20	1.94
117290--117383	20	4.7	20	80	7	91	32	25	17	24	1.96
117899--117965	19	3.5	19	85	2	89	47	25	16	10	1.78
117961--118110	19	8.1	19	81	8	175	12	21	20	45	1.84
120110--120232	42	2.9	42	81	4	124	23	34	17	24	1.95
120166--120232	21	3.2	21	74	4	64	25	34	20	19	1.96
121588--121623	14	2.6	14	95	0	63	30	0	25	44	1.54
121803--121933	19	7.7	19	69	23	112	16	22	19	42	1.89
121807--121933	33	3.8	33	86	8	195	16	22	18	42	1.89
121800--121932	66	2.0	66	95	0	239	18	21	18	41	1.90
124254--124311	20	2.9	20	94	0	98	37	22	22	17	1.93
124335--124392	14	3.8	14	79	20	71	10	20	18	50	1.76
124317--124387	33	2.2	33	84	0	88	19	19	21	39	1.93
124330--124464	19	7.6	19	83	13	173	13	21	18	46	1.83
124330--124447	33	3.4	33	92	5	182	13	20	17	48	1.81
124330--124464	33	3.8	36	90	6	165	13	21	18	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126457--126520	19	3.3	19	82	4	83	37	23	25	14	1.92
126509--126566	14	3.9	14	79	16	71	48	25	17	8	1.75
126493--126585	32	2.8	33	90	6	145	46	25	18	9	1.79
126524--126601	19	4.4	19	81	16	96	47	28	16	7	1.74
126619--126676	14	3.9	14	79	16	71	8	17	25	48	1.75
126602--126684	32	2.5	33	96	3	159	9	19	22	48	1.78
126677--126722	20	2.4	19	82	7	56	17	23	21	36	1.94
126665--126730	19	3.4	19	77	4	69	15	21	24	39	1.91
128782--128825	22	2.0	22	95	0	79	18	15	45	20	1.85
128993--129106	20	5.7	20	73	10	72	26	15	23	34	1.95
129095--129187	20	4.5	21	78	4	100	17	24	18	39	1.91
129034--129168	41	3.3	41	83	4	139	20	20	20	37	1.94
129095--129187	41	2.3	41	100	0	186	17	24	18	39	1.91
129645--129688	20	2.3	19	81	11	54	45	6	22	25	1.77
129804--129851	18	2.7	18	80	9	62	41	0	4	54	1.20
132333--132543	117	1.8	117	84	0	287	36	15	21	26	1.93
139423--139470	22	2.1	23	81	11	55	22	2	22	52	1.58
140170--140257	26	3.4	26	93	0	149	40	13	19	26	1.88
142394--142468	31	2.4	31	84	2	105	16	24	30	29	1.96
143481--143575	35	2.7	36	85	4	122	32	2	24	41	1.67
156331--156384	20	2.7	20	94	0	90	33	24	16	25	1.96
156396--156445	20	2.5	20	90	0	73	28	28	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157042--157088	20	2.3	20	79	13	60	12	25	14	46	1.80
159099--159221	42	2.9	42	80	2	122	22	36	17	22	1.95
159155--159221	21	3.2	21	66	6	55	23	35	20	19	1.95
160579--160614	14	2.6	14	95	0	63	30	0	25	44	1.54
160759--160909	19	8.7	19	63	21	71	15	21	20	42	1.89
160763--160889	33	3.9	32	85	8	184	14	22	19	43	1.88
160756--160888	66	2.0	66	95	0	239	16	21	19	42	1.89
162706--162742	12	3.1	12	92	0	65	2	24	0	72	0.97
163759--163810	21	2.5	21	87	3	70	38	17	21	23	1.93
163776--163886	20	5.4	20	72	5	80	38	20	18	22	1.93
164104--164187	20	4.2	20	78	6	98	39	22	21	16	1.92
164120--164207	40	2.4	38	83	11	112	42	20	20	17	1.90
164214--164281	19	3.8	19	85	12	92	14	22	16	47	1.82
164418--164454	14	2.6	14	86	0	56	48	21	0	29	1.50
166320--166387	20	3.5	19	82	6	82	38	23	23	14	1.92
166376--166432	14	3.7	14	75	20	60	50	22	15	10	1.74
166360--166452	33	2.8	33	98	1	179	46	21	19	12	1.83
166424--166468	18	2.4	18	85	3	54	46	24	17	11	1.81
166391--166474	19	4.8	18	74	14	61	45	22	19	13	1.84
166464--166522	19	3.1	19	85	2	73	16	23	20	38	1.92
166479--166533	20	2.8	19	83	8	65	16	23	23	36	1.94
167015--167059	18	2.5	18	88	0	72	13	15	44	26	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
168399--168436	20	1.9	20	88	0	58	36	26	15	21	1.93
168675--168723	22	2.3	21	83	10	64	26	14	38	20	1.91
168681--168724	22	2.0	22	90	0	70	25	15	38	20	1.92
168893--169027	20	6.7	20	80	7	130	25	17	23	33	1.96
169016--169088	21	3.5	21	83	1	85	17	24	19	38	1.93
168893--169030	61	2.3	61	87	0	204	24	17	23	34	1.96
182267--182294	6	4.7	6	100	0	56	67	0	0	32	0.91
193495--193531	12	3.0	12	92	4	56	18	54	16	10	1.71
193580--193619	19	2.1	19	85	0	53	55	0	0	45	0.99
193626--193679	12	4.6	12	83	4	74	24	48	16	11	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37