genome.fa.s8527.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008527.1 Hibiscus syriacus cultivar Beakdansim tig00111402_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9057482

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   

This is table  32  of  37  ( 4336 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7755408--7755611	42	4.9	41	88	3	259	35	23	19	21	1.96
7756373--7756954	106	5.4	106	88	3	799	35	24	17	22	1.95
7758576--7758605	2	15.0	2	100	0	60	50	0	0	50	1.00
7758477--7758728	129	1.9	133	95	4	458	32	3	3	60	1.29
7758826--7758868	19	2.2	20	87	4	61	18	6	0	74	1.04
7759358--7759389	3	11.3	3	87	12	50	34	0	0	65	0.93
7759673--7759725	9	5.8	9	78	8	54	20	7	0	71	1.10
7760728--7760830	31	3.3	31	77	0	107	37	6	4	50	1.50
7768261--7768327	2	33.5	2	100	0	134	49	0	0	50	1.00
7768840--7768972	20	6.7	20	94	0	230	30	25	18	24	1.98
7769160--7769203	22	2.0	22	95	0	79	20	40	15	22	1.90
7769661--7769715	25	2.2	24	78	15	58	20	9	18	52	1.71
7770844--7770891	18	2.7	18	93	0	87	27	45	12	14	1.81
7771426--7771492	20	3.4	20	81	2	73	38	23	22	14	1.92
7771465--7771547	19	4.6	19	82	14	122	46	19	20	13	1.82
7771556--7771619	19	3.6	19	70	20	57	12	20	21	45	1.84
7771613--7771655	20	2.2	20	91	0	68	13	23	25	37	1.92
7772052--7772120	21	3.3	20	74	6	66	24	40	15	18	1.90
7772042--7772132	41	2.2	42	88	2	139	21	41	15	20	1.89
7773541--7773579	14	2.8	14	84	0	51	35	0	17	46	1.49
7774840--7774884	3	15.0	3	85	0	63	0	26	0	73	0.84
7774837--7774884	12	4.0	12	100	0	96	0	25	0	75	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7775860--7775926	20	3.3	20	95	0	116	26	17	31	23	1.97
7775937--7775988	21	2.5	21	90	3	79	40	17	21	21	1.91
7775978--7776045	20	3.4	20	95	0	118	26	29	20	23	1.99
7775973--7776063	40	2.3	40	80	0	119	32	25	19	21	1.97
7776277--7776352	20	3.8	20	91	0	116	40	25	21	13	1.89
7776390--7776434	19	2.4	19	84	0	54	15	22	22	40	1.91
7777999--7778116	44	2.7	43	80	6	130	21	16	41	21	1.90
7778053--7778112	21	2.9	21	73	9	68	21	13	41	23	1.88
7778480--7778552	20	3.7	20	90	0	110	36	23	24	15	1.93
7778460--7778545	40	2.2	40	82	4	102	36	25	20	17	1.95
7778539--7778597	19	3.4	19	73	22	74	47	20	18	13	1.82
7778555--7778613	14	3.9	14	76	20	64	49	23	16	10	1.77
7778539--7778618	33	2.4	33	97	0	151	47	22	18	11	1.80
7778625--7778688	19	3.6	19	72	20	75	14	18	20	46	1.83
7778673--7778727	20	2.8	19	83	8	65	16	23	23	36	1.94
7779276--7779315	18	2.2	18	90	0	62	15	15	42	27	1.86
7780635--7780693	20	3.0	20	87	0	73	44	22	18	15	1.87
7780957--7781000	22	2.0	22	95	0	79	18	15	45	20	1.85
7781205--7781324	41	3.0	40	87	1	150	23	15	25	35	1.95
7781187--7781320	20	6.7	20	81	5	135	24	17	25	32	1.96
7781214--7781342	41	3.2	41	84	3	127	23	17	24	34	1.96
7781315--7781361	20	2.3	20	85	3	58	21	21	17	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7781351--7781403	21	2.5	22	81	6	74	33	18	26	20	1.96
7782346--7782413	2	34.0	2	100	0	136	50	0	0	50	1.00
7783506--7783560	26	2.2	24	84	12	67	43	27	23	5	1.75
7790104--7790154	24	2.1	24	96	0	93	29	19	31	19	1.97
7790285--7790370	14	6.7	14	72	22	82	15	12	12	59	1.62
7790295--7790361	24	2.8	24	88	0	80	16	13	10	59	1.60
7790285--7790370	38	2.3	38	89	4	129	15	12	12	59	1.62
7790317--7790365	24	2.0	24	96	0	89	16	12	10	61	1.57
7790633--7790727	10	9.1	10	75	8	91	8	13	21	56	1.63
7790625--7790684	14	3.9	14	73	24	50	6	11	21	60	1.54
7790647--7790726	20	4.0	20	90	0	115	8	15	21	55	1.67
7790647--7790727	30	2.7	30	84	0	108	8	14	20	55	1.66
7791050--7791116	27	2.5	27	97	0	125	61	4	7	26	1.42
7805257--7805288	4	8.0	4	100	0	64	50	25	0	25	1.50
7808622--7808664	21	2.1	20	82	4	50	20	20	4	53	1.63
7814500--7814544	19	2.3	20	85	7	58	48	2	0	48	1.13
7814538--7814578	13	3.2	13	82	3	57	31	4	0	63	1.15
7814524--7814579	25	2.2	25	79	14	62	33	5	0	60	1.19
7821530--7821599	30	2.4	30	83	4	81	54	2	1	41	1.24
7822156--7822270	57	2.0	57	96	0	212	43	13	13	30	1.81
7827634--7827677	15	2.9	15	89	0	61	25	2	18	54	1.55
7828126--7828159	16	2.1	16	94	0	59	32	8	26	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7835179--7835253	38	2.0	37	84	5	98	49	2	0	48	1.15
7841680--7841847	86	2.0	82	87	5	239	50	6	27	15	1.69
7843396--7843473	27	2.9	27	80	5	77	74	5	2	17	1.12
7843425--7843477	18	3.0	18	76	13	65	75	3	1	18	1.05
7843534--7843575	2	21.0	2	100	0	84	50	0	0	50	1.00
7843609--7843668	29	2.0	31	90	6	97	35	6	16	41	1.75
7843842--7843883	21	2.0	21	95	0	75	23	21	28	26	1.99
7844166--7844236	34	2.2	32	87	5	97	33	15	28	22	1.95
7845081--7845128	19	2.5	20	82	3	62	52	6	12	29	1.63
7846348--7846407	29	2.0	31	90	6	97	35	6	16	41	1.75
7846624--7846665	21	2.0	21	95	0	75	23	21	28	26	1.99
7846694--7846733	20	1.9	21	85	10	55	37	37	10	15	1.80
7846948--7847018	34	2.2	32	84	5	88	33	15	26	23	1.95
7849387--7849517	53	2.5	53	94	0	226	27	22	20	29	1.98
7849486--7849747	106	2.5	106	87	1	355	23	16	24	35	1.95
7850813--7850839	14	1.9	14	100	0	54	0	14	3	81	0.82
7861002--7861079	27	2.9	27	80	5	77	73	5	3	17	1.18
7861031--7861083	18	3.0	18	73	13	56	73	3	3	18	1.14
7861005--7861096	33	2.8	35	85	8	113	73	6	3	16	1.17
7861151--7861189	2	19.5	2	89	0	60	46	2	2	48	1.29
7862763--7862818	23	2.5	23	82	5	71	51	1	0	46	1.11
7863294--7863747	51	8.9	51	79	3	384	33	11	15	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7863290--7863745	102	4.5	101	83	3	459	33	11	15	39	1.84
7867701--7867744	4	11.0	4	87	0	61	43	0	2	54	1.12
7867701--7867744	10	4.4	10	91	0	61	43	0	2	54	1.12
7867701--7867744	6	7.3	6	92	0	61	43	0	2	54	1.12
7867701--7867752	10	5.2	10	90	0	59	40	0	5	53	1.25
7868702--7868743	2	21.0	2	100	0	84	50	0	0	50	1.00
7875804--7875837	14	2.4	14	85	0	50	47	0	0	52	1.00
7877273--7877436	59	2.8	59	86	3	215	48	14	3	33	1.59
7880049--7880122	34	2.2	32	84	13	89	60	0	1	37	1.05
7893360--7893401	2	21.0	2	100	0	84	50	0	0	50	1.00
7894219--7894278	23	2.7	23	82	10	72	58	1	0	40	1.08
7896077--7896569	251	2.0	247	93	2	853	32	8	16	42	1.79
7898509--7898596	33	2.6	33	83	7	106	20	2	13	63	1.40
7910028--7910062	12	3.2	11	88	11	54	54	0	0	45	0.99
7913012--7913373	123	2.9	127	86	6	562	23	25	19	31	1.98
7913760--7913859	33	3.0	34	83	2	139	39	3	4	54	1.35
7914381--7914440	20	2.9	21	92	5	104	20	23	38	18	1.93
7914375--7914465	20	4.4	21	85	10	100	20	26	34	18	1.96
7916233--7916310	33	2.4	32	83	10	97	60	1	0	38	1.05
7927135--7927164	3	10.0	3	92	0	51	30	0	3	66	1.07
7929711--7929882	20	8.6	20	84	5	213	34	26	19	19	1.96
7930262--7930332	33	2.2	33	94	0	124	11	23	16	47	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7930411--7930487	21	3.7	21	81	6	102	48	16	19	15	1.82
7930469--7930533	14	4.3	14	73	17	58	46	21	23	9	1.80
7930465--7930544	33	2.4	33	93	0	133	47	22	20	10	1.79
7930540--7930667	19	7.1	19	70	19	78	11	25	17	45	1.82
7930562--7930618	14	3.7	14	72	20	51	10	24	21	43	1.83
7930545--7930667	33	3.5	33	85	10	156	11	24	17	46	1.81
7930603--7930667	21	3.1	21	82	4	96	10	26	15	47	1.78
7932346--7932660	93	3.4	93	98	0	605	21	13	19	45	1.85
7932776--7932832	14	3.7	14	72	20	51	43	24	22	8	1.81
7932790--7932881	19	5.4	18	72	24	65	46	28	17	7	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37