genome.fa.s8527.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008527.1 Hibiscus syriacus cultivar Beakdansim tig00111402_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9057482

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   

This is table  33  of  37  ( 4336 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7932758--7932881	33	3.7	33	91	1	185	45	27	17	8	1.78
7932807--7932865	14	3.9	14	76	20	64	47	28	16	6	1.72
7932877--7933029	19	8.6	19	73	13	121	11	20	22	45	1.83
7932882--7933011	32	3.8	33	81	11	163	10	20	21	46	1.81
7934952--7934987	14	2.6	14	95	0	63	33	0	22	44	1.53
7935078--7935165	19	4.8	19	82	14	123	47	15	22	13	1.81
7935078--7935184	53	2.0	53	98	1	207	45	16	24	13	1.83
7935198--7935468	72	3.9	67	77	13	280	13	21	18	46	1.83
7935180--7935449	105	2.6	109	90	7	425	13	22	17	46	1.83
7935180--7935449	53	5.1	52	89	8	406	13	22	17	46	1.83
7937727--7937751	12	2.1	12	100	0	50	0	28	0	72	0.86
7937926--7937972	24	2.0	24	87	8	69	38	21	14	25	1.92
7938663--7938891	20	11.4	20	87	1	244	19	17	25	37	1.94
7938885--7938955	21	3.4	20	75	13	54	25	18	22	33	1.96
7952063--7952089	4	6.8	4	100	0	54	25	0	0	74	0.83
7956765--7956876	60	1.9	59	87	3	163	33	20	5	41	1.75
7961397--7961535	35	3.9	35	74	5	145	40	17	4	37	1.70
7963283--7963331	9	5.1	9	76	13	53	73	4	0	22	1.00
7963283--7963331	19	2.5	20	96	3	91	73	4	0	22	1.00
7963283--7963331	10	5.0	10	78	11	57	73	4	0	22	1.00
7970481--7970528	25	1.9	25	83	8	62	25	14	12	47	1.79
7970958--7971119	63	2.6	65	83	6	190	25	19	21	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7975531--7975575	18	2.5	18	100	0	90	13	17	20	48	1.80
7979743--7979904	64	2.5	65	83	8	190	33	19	20	25	1.97
7980461--7980520	18	3.1	18	80	17	75	18	21	33	26	1.96
7982331--7982426	20	4.8	20	90	0	120	23	18	19	37	1.94
7982921--7983025	21	5.0	21	72	3	86	21	37	18	22	1.94
7982946--7983028	42	2.0	42	83	4	105	21	38	19	20	1.93
7983559--7983590	13	2.5	13	100	0	64	46	21	15	15	1.83
7984421--7984456	14	2.6	14	90	0	54	30	0	22	47	1.52
7984562--7984657	33	2.8	33	84	3	111	42	18	25	13	1.87
7984628--7984667	20	2.0	20	90	0	62	52	20	15	12	1.74
7984668--7984786	52	2.2	53	88	2	168	13	19	21	46	1.84
7984758--7984846	20	4.4	20	90	2	135	16	21	25	35	1.94
7987270--7987323	24	2.2	24	90	0	81	40	18	18	22	1.91
7987286--7987337	24	2.2	24	82	0	59	36	21	19	23	1.95
7988165--7988271	20	5.3	20	94	0	142	24	19	23	32	1.97
7989033--7989204	92	1.9	91	84	3	229	29	7	16	46	1.74
7990935--7990971	13	2.8	13	83	0	56	21	48	10	18	1.78
7996166--7996230	23	2.8	23	77	9	69	20	24	23	32	1.98
8005588--8005633	21	2.2	21	84	7	58	23	0	6	69	1.11
8005588--8005631	20	2.1	21	83	4	54	22	0	6	70	1.11
8005607--8005647	22	1.9	21	85	5	55	24	0	4	70	1.06
8011385--8011418	2	17.0	2	100	0	68	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8026033--8026059	13	2.1	13	100	0	54	18	44	22	14	1.86
8026396--8026472	38	2.0	38	92	0	127	32	9	12	45	1.74
8028522--8028599	24	3.2	24	78	10	88	20	15	17	46	1.84
8028536--8028628	12	7.8	12	70	9	55	21	11	18	48	1.80
8028522--8028630	48	2.3	48	83	3	130	21	12	17	48	1.80
8028536--8028630	24	4.0	24	81	0	100	22	11	17	48	1.79
8031407--8031488	25	3.3	26	78	10	91	23	19	25	31	1.98
8034175--8034583	206	2.0	205	85	2	561	33	9	19	38	1.83
8045354--8045402	2	24.5	2	100	0	98	51	0	0	48	1.00
8059383--8059440	23	2.5	23	91	0	98	37	13	20	27	1.91
8059429--8059492	27	2.4	27	97	0	119	39	15	15	29	1.89
8059547--8059591	16	2.8	16	93	0	72	33	17	11	37	1.85
8068337--8068383	22	2.1	23	84	4	60	23	10	25	40	1.87
8071886--8071975	27	3.1	27	65	20	74	40	11	17	31	1.85
8072577--8072601	2	12.5	2	100	0	50	48	0	0	52	1.00
8074606--8074651	22	2.1	21	84	11	58	50	15	2	32	1.56
8076975--8077033	31	2.0	30	86	6	84	49	5	16	28	1.67
8083313--8083341	2	14.5	2	100	0	58	48	0	0	51	1.00
8085304--8085343	21	1.9	21	89	0	62	32	0	5	62	1.17
8097005--8097035	2	15.5	2	100	0	62	48	0	0	51	1.00
8104295--8104334	14	2.9	14	85	3	55	40	0	0	60	0.97
8111622--8111666	23	2.0	23	86	8	65	8	13	17	60	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8120481--8120540	28	2.2	27	84	3	75	18	6	16	58	1.59
8126750--8127040	144	2.0	144	97	0	546	32	18	21	27	1.96
8129276--8129309	16	2.1	16	94	0	59	32	8	26	32	1.87
8130059--8130091	15	2.1	16	88	5	50	51	15	24	9	1.72
8137390--8137420	3	10.7	3	93	6	55	70	0	0	29	0.87
8137627--8137764	68	2.0	68	94	0	240	34	15	24	26	1.95
8139455--8139479	12	2.1	12	100	0	50	24	0	24	52	1.48
8143714--8143827	60	1.9	61	85	5	160	31	25	6	36	1.81
8143743--8143892	61	2.5	61	81	5	153	32	26	4	36	1.77
8147595--8147674	38	2.1	38	95	2	144	26	8	7	57	1.55
8151855--8151914	22	2.7	22	92	0	93	30	21	25	23	1.99
8151882--8151951	23	3.1	23	89	2	97	31	24	18	25	1.98
8152567--8152632	22	3.0	22	77	0	69	24	16	13	45	1.84
8158919--8159004	16	5.6	16	72	8	54	46	3	1	48	1.26
8166176--8166225	18	2.8	18	87	0	64	30	36	16	18	1.92
8177912--8177950	20	2.0	19	85	5	51	35	17	0	46	1.49
8180750--8180934	31	6.0	31	97	1	336	38	22	19	19	1.93
8185126--8185308	31	6.0	31	94	3	318	38	22	19	19	1.94
8185126--8185308	91	2.0	92	93	4	316	38	22	19	19	1.94
8189630--8189753	50	2.4	52	84	4	164	27	20	25	26	1.99
8189765--8189892	51	2.5	51	82	1	141	18	29	33	17	1.95
8201470--8201544	32	2.3	33	83	2	98	9	9	26	54	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8212678--8212718	4	10.2	4	94	0	73	46	24	0	29	1.53
8213794--8213886	15	6.3	15	87	2	136	51	0	1	47	1.07
8213812--8213966	37	4.7	30	86	11	159	45	0	3	50	1.20
8213872--8214011	22	6.5	22	69	15	114	40	0	9	50	1.35
8213857--8213957	37	2.7	37	95	0	184	44	0	5	49	1.26
8213931--8213966	14	2.5	14	95	4	63	41	0	0	58	0.98
8213812--8213966	15	9.5	15	75	18	132	45	0	3	50	1.20
8213946--8214043	32	3.4	32	71	26	108	35	1	9	54	1.39
8214124--8214319	31	6.6	31	85	13	281	33	0	12	53	1.39
8214154--8214198	22	2.0	22	100	0	90	35	0	13	51	1.41
8214341--8214388	22	2.4	18	73	23	51	33	0	14	52	1.42
8213946--8214603	327	2.0	323	90	6	1046	34	0	12	52	1.42
8214481--8214525	21	2.1	22	87	4	65	33	0	15	51	1.44
8214535--8214576	21	2.0	22	95	4	77	35	0	14	50	1.43
8214556--8214662	32	3.7	32	69	23	117	32	0	14	53	1.41
8214642--8214684	22	2.0	22	95	0	77	37	0	11	51	1.39
8215238--8215264	2	13.5	2	100	0	54	51	0	0	48	1.00
8215685--8215777	4	23.0	4	68	10	55	66	3	8	21	1.33
8215697--8215773	29	2.7	29	76	11	79	67	3	7	20	1.32
8218026--8218836	211	3.8	211	92	1	1306	22	18	24	33	1.97
8218026--8218836	106	7.7	105	94	1	1302	22	18	24	33	1.97
8218671--8219442	386	2.0	386	99	0	1526	23	16	23	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8220052--8220085	6	5.8	6	96	3	61	0	0	11	88	0.52
8225117--8225150	15	2.3	15	100	0	68	5	38	26	29	1.80
8231374--8231431	2	29.5	2	96	3	109	50	0	0	50	1.00
8238137--8238181	13	3.5	13	81	0	54	20	44	17	17	1.87
8238119--8238202	31	2.5	32	86	9	116	19	41	20	19	1.90
8238154--8238208	8	7.5	8	75	19	57	18	36	23	21	1.95
8238176--8238204	15	1.9	15	100	0	58	17	34	27	20	1.95
8240742--8240801	12	5.0	12	80	8	77	15	15	18	51	1.76
8240719--8240813	24	4.0	23	80	10	93	20	12	16	50	1.77
8244720--8244793	33	2.2	33	97	0	139	12	45	13	28	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37