genome.fa.s8527.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008527.1 Hibiscus syriacus cultivar Beakdansim tig00111402_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9057482

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   

This is table  8  of  37  ( 4336 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1751165--1751211	15	3.0	15	79	17	51	63	0	0	36	0.94
1751165--1751212	16	3.1	15	85	8	62	62	0	0	37	0.95
1751309--1751378	32	2.2	32	97	0	131	20	5	15	58	1.57
1752092--1752267	78	2.3	78	98	0	343	39	9	13	38	1.77
1759649--1759727	26	3.0	26	100	0	158	46	11	11	30	1.75
1761020--1761366	87	4.0	87	96	2	628	28	21	22	27	1.99
1761028--1761366	172	2.0	172	96	1	626	28	21	22	28	1.99
1766154--1766194	2	20.5	2	100	0	82	48	0	0	51	1.00
1766894--1766928	18	2.0	18	88	5	54	45	0	2	51	1.16
1775198--1775272	35	2.1	35	92	0	123	33	0	22	44	1.53
1785217--1785332	58	2.0	58	82	0	142	24	24	18	33	1.97
1791839--1791877	15	2.6	15	87	0	51	38	20	5	35	1.75
1794790--1794947	21	7.8	20	72	7	86	38	25	17	18	1.92
1794914--1795223	40	7.8	40	90	2	363	37	24	17	20	1.93
1794914--1795223	20	15.5	20	80	6	288	37	24	17	20	1.93
1794914--1795223	60	5.2	60	81	5	322	37	24	17	20	1.93
1795906--1795952	24	2.0	24	87	8	69	25	14	21	38	1.92
1798384--1798548	33	4.7	34	81	13	183	46	18	21	13	1.83
1798398--1798586	19	10.7	19	78	17	219	45	17	21	15	1.85
1798384--1798586	52	3.9	52	86	10	281	45	18	21	14	1.85
1798595--1798692	19	5.4	19	84	13	143	14	22	17	45	1.84
1798576--1798692	53	2.2	53	96	1	218	13	24	17	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1800813--1800869	14	3.7	14	77	20	60	45	22	21	10	1.82
1800794--1800886	33	2.8	33	93	0	159	48	21	19	10	1.79
1800757--1800891	19	7.6	19	76	16	119	46	23	18	11	1.81
1800887--1801015	19	7.3	19	75	17	125	8	17	28	45	1.77
1800887--1800978	33	2.8	33	93	3	150	7	18	28	45	1.76
1801067--1801717	93	7.0	93	99	0	1284	46	19	12	21	1.83
1803423--1803512	14	5.7	14	69	23	63	44	22	23	10	1.82
1803415--1803529	33	3.5	33	97	0	221	46	20	22	10	1.80
1803437--1803534	19	5.7	19	69	22	90	44	21	22	11	1.83
1803546--1803602	14	3.7	14	75	20	51	10	24	22	42	1.85
1803530--1803610	33	2.5	33	93	0	135	9	22	22	45	1.81
1803586--1803663	41	1.9	41	97	0	147	12	25	16	44	1.83
1803587--1803662	21	3.7	21	83	3	109	11	25	17	46	1.82
1803742--1803812	33	2.2	33	92	0	115	47	18	22	11	1.80
1803994--1804048	22	2.5	22	81	0	74	20	16	40	23	1.91
1804195--1804348	20	7.7	20	81	7	168	18	18	26	37	1.93
1804194--1804348	40	3.8	40	82	4	186	18	18	26	37	1.93
1804335--1804417	21	4.0	21	73	6	78	25	16	24	33	1.96
1804315--1804413	42	2.4	43	77	11	100	21	18	23	37	1.94
1818521--1818584	33	1.9	33	96	0	119	15	25	26	32	1.95
1820821--1820906	43	2.0	45	83	4	113	27	18	18	34	1.95
1835311--1835346	19	1.9	18	88	5	54	19	0	52	27	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1848180--1848211	7	4.4	7	92	7	55	12	31	28	28	1.93
1848864--1848936	36	2.0	36	94	0	128	43	8	19	28	1.79
1849619--1849729	29	3.8	29	81	9	93	18	32	32	16	1.93
1850422--1850478	28	2.0	28	89	6	87	31	0	12	56	1.36
1856310--1856366	28	2.0	28	89	6	87	31	0	12	56	1.36
1857754--1857787	15	2.3	15	89	0	50	67	0	29	2	1.05
1857741--1857787	10	4.6	10	89	2	58	70	2	25	2	1.10
1860514--1860749	49	4.8	49	94	0	409	42	0	10	46	1.44
1860897--1860951	12	4.7	12	86	6	69	52	0	3	43	1.18
1860889--1860951	23	2.7	24	90	9	96	53	0	4	41	1.22
1861252--1861456	12	16.5	12	72	18	109	46	2	8	42	1.47
1861291--1861511	14	17.6	11	69	20	84	45	1	7	44	1.42
1861242--1861511	26	10.6	26	80	9	263	45	2	8	43	1.46
1861228--1861456	124	1.8	124	91	1	379	45	2	9	42	1.49
1861628--1861672	24	1.9	24	86	4	65	40	2	4	53	1.33
1861639--1861680	17	2.5	17	80	0	57	40	0	2	57	1.12
1861706--1861759	22	2.4	23	75	12	58	53	0	1	44	1.11
1864020--1864053	15	2.2	16	94	5	61	55	5	0	38	1.24
1864106--1864211	30	3.5	30	87	5	142	46	15	0	37	1.52
1864110--1864164	15	3.6	16	70	20	55	43	14	0	41	1.45
1864676--1864724	22	2.2	22	96	0	89	22	18	53	6	1.66
1864751--1864822	29	2.5	29	88	4	101	15	33	31	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1864845--1864875	15	2.1	15	100	0	62	25	22	19	32	1.97
1865813--1865876	27	2.4	27	97	0	119	32	14	21	31	1.93
1866296--1866365	12	5.8	12	78	6	70	15	14	18	51	1.77
1866297--1866369	24	3.0	24	83	0	101	17	12	17	52	1.75
1866259--1866367	48	2.3	49	82	6	125	19	15	17	47	1.82
1871974--1872061	23	3.8	23	78	14	108	29	26	26	18	1.98
1876218--1876248	2	16.0	2	93	6	55	48	0	0	51	1.00
1879926--1879979	3	18.0	3	81	7	65	59	1	3	35	1.26
1881427--1881451	13	1.9	13	100	0	50	48	8	0	44	1.32
1881696--1881866	87	2.0	87	90	0	270	27	11	14	47	1.77
1881795--1882320	219	2.4	215	86	6	713	34	7	10	47	1.67
1888274--1888312	11	3.6	11	82	3	53	12	0	15	71	1.14
1908307--1909020	356	2.0	356	98	0	1383	34	18	5	40	1.75
1909045--1909107	3	20.7	3	83	3	81	39	0	58	1	1.07
1909076--1909209	18	7.8	18	81	11	156	55	0	43	1	1.09
1909045--1909220	6	27.7	6	77	10	136	51	0	46	1	1.11
1909374--1909471	9	11.2	9	72	6	76	52	0	45	2	1.12
1909395--1909492	6	16.3	6	88	0	115	58	0	40	1	1.05
1909398--1909492	18	5.3	18	88	5	129	58	0	40	1	1.05
1909117--1909647	277	1.9	279	94	1	940	42	12	26	18	1.85
1912088--1912114	13	2.1	13	100	0	54	37	7	14	40	1.74
1916168--1916260	37	2.5	37	89	0	141	45	13	8	32	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1916724--1916781	23	2.6	21	75	20	55	22	6	1	68	1.22
1916792--1916829	2	19.0	2	100	0	76	50	0	0	50	1.00
1916852--1916956	38	2.9	38	84	8	112	27	0	0	70	1.00
1916916--1917003	9	9.7	9	76	11	56	15	5	0	78	0.93
1916918--1917003	12	7.1	12	65	12	50	15	5	0	79	0.92
1916865--1916968	34	2.8	37	83	9	99	25	3	0	70	1.10
1916863--1917003	38	3.8	36	79	11	108	22	4	0	72	1.07
1916889--1916984	34	2.7	34	81	12	88	20	5	0	73	1.02
1916923--1916998	22	3.5	22	69	25	63	15	6	0	77	0.96
1916916--1917052	48	2.9	47	80	13	124	17	8	0	73	1.11
1917039--1917086	23	2.1	22	84	3	60	22	4	0	72	1.01
1920085--1920131	14	3.2	15	77	22	55	74	8	14	2	1.15
1921636--1921718	43	1.9	43	90	0	130	28	30	19	21	1.98
1922146--1922433	36	8.1	36	78	9	288	28	18	12	40	1.88
1922121--1922266	36	4.0	36	87	5	170	28	19	12	39	1.88
1922146--1922403	137	1.9	137	90	1	410	28	18	12	40	1.87
1922183--1922366	100	1.8	99	84	2	251	29	18	11	40	1.85
1922283--1922433	37	4.1	36	85	2	194	26	19	14	39	1.91
1922283--1922433	73	2.1	73	87	0	212	26	19	14	39	1.91
1922486--1922603	34	3.3	35	82	8	150	44	14	8	33	1.75
1923197--1923308	37	3.0	37	90	5	181	41	14	11	32	1.81
1923793--1923835	20	2.2	20	83	8	52	18	4	4	72	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1923796--1923864	25	2.8	25	76	10	70	23	4	2	69	1.20
1928934--1928967	18	1.9	18	88	5	52	29	20	0	50	1.49
1937005--1937037	15	2.2	15	94	0	57	6	24	15	54	1.63
1938375--1938431	16	3.4	16	72	9	60	38	8	3	49	1.51
1938370--1938449	34	2.4	34	100	0	160	42	7	2	47	1.45
1938391--1938456	18	3.7	18	74	10	73	45	7	1	45	1.41
1939992--1940066	31	2.4	31	80	4	89	42	4	4	49	1.40
1946467--1946527	23	2.8	21	79	15	70	21	22	32	22	1.98
1954821--1954860	2	20.5	2	89	5	64	47	0	0	52	1.00
1956281--1956340	3	21.0	3	83	13	74	66	1	1	30	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37