genome.fa.s8527.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008527.1 Hibiscus syriacus cultivar Beakdansim tig00111402_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9057482

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   

This is table  25  of  37  ( 4336 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6096333--6096393	19	3.5	19	72	21	69	11	22	21	44	1.84
6096304--6096393	33	2.7	33	92	0	144	13	21	21	44	1.85
6096500--6096536	14	2.6	14	91	0	65	45	24	0	29	1.53
6097892--6097958	21	3.2	21	73	0	71	17	20	37	23	1.94
6097892--6098097	42	4.9	42	74	7	175	22	17	36	22	1.95
6097922--6098097	84	2.1	84	97	0	334	23	17	37	22	1.94
6098314--6098500	91	2.0	90	89	6	286	47	19	12	21	1.82
6098644--6098785	63	2.3	63	86	2	151	26	36	16	19	1.94
6098667--6098797	63	2.1	63	98	0	253	23	36	18	21	1.95
6100250--6100408	19	8.8	19	78	14	167	46	19	22	11	1.82
6100275--6100408	33	3.9	33	83	9	178	45	20	22	11	1.83
6100250--6100408	71	2.2	72	92	1	257	46	19	22	11	1.82
6100414--6100450	19	1.9	19	88	0	56	2	16	27	54	1.56
6100420--6100472	19	2.7	19	88	2	70	9	18	24	47	1.78
6100993--6101106	20	5.7	20	84	6	122	23	19	25	31	1.98
6100993--6101109	61	1.9	61	87	0	171	23	18	24	33	1.97
6100993--6101127	61	2.2	61	84	2	164	22	20	23	32	1.98
6101095--6101146	20	2.5	21	87	3	70	19	25	17	38	1.93
6101177--6101217	21	2.0	21	85	0	55	34	31	17	17	1.93
6101734--6101779	23	2.0	23	82	0	56	28	4	4	63	1.33
6104405--6104582	60	3.0	60	77	5	171	31	22	4	41	1.74
6105732--6105847	60	1.9	60	83	0	151	32	13	6	47	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6105732--6105863	60	2.2	60	82	2	149	31	14	5	48	1.66
6106067--6106207	60	2.3	60	74	3	131	43	6	16	33	1.73
6110298--6110554	132	2.0	129	87	5	374	44	7	3	43	1.51
6110918--6110946	15	1.9	15	100	0	58	48	27	13	10	1.75
6111188--6111301	54	2.1	54	85	4	151	38	7	5	49	1.53
6115172--6115223	26	2.0	26	88	0	77	48	11	32	7	1.68
6115240--6115278	13	2.9	14	80	3	53	58	0	41	0	0.98
6115680--6115713	15	2.2	16	94	5	61	38	0	5	55	1.24
6117612--6117889	14	21.1	14	69	22	147	44	7	2	45	1.44
6117612--6117798	11	15.2	11	70	20	113	44	8	1	45	1.42
6117599--6117905	26	12.3	26	77	11	277	44	7	2	45	1.46
6117628--6117896	99	2.7	99	86	6	341	44	7	1	45	1.43
6117931--6117965	11	3.1	11	95	4	61	42	2	0	54	1.15
6118154--6118185	10	3.2	10	95	0	55	46	9	0	43	1.35
6118169--6118243	31	2.4	31	95	0	132	50	10	0	38	1.37
6118199--6118473	49	5.6	49	87	5	378	45	11	0	42	1.45
6118199--6118473	97	2.8	98	87	4	378	45	11	0	42	1.45
6122099--6122159	28	2.2	28	96	0	113	57	11	0	31	1.34
6128082--6128106	2	12.5	2	100	0	50	48	0	0	52	1.00
6131263--6131382	60	2.0	60	90	0	186	12	42	5	39	1.67
6138914--6138938	2	12.5	2	100	0	50	52	0	0	48	1.00
6139180--6139242	29	2.1	30	91	2	101	33	15	3	47	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6139938--6139982	20	2.2	20	88	7	65	53	6	0	40	1.27
6140545--6140745	21	9.7	19	78	13	150	24	20	20	34	1.96
6140539--6140745	42	5.0	40	81	9	193	24	20	20	34	1.96
6140520--6140745	63	3.6	62	85	10	286	24	20	19	34	1.96
6141412--6141477	21	3.1	21	75	12	64	34	19	21	24	1.96
6141430--6141561	69	1.9	71	93	3	232	36	15	21	27	1.93
6142837--6142912	35	2.2	35	90	0	116	39	22	1	36	1.63
6143309--6143556	130	1.9	130	92	0	415	36	14	12	35	1.85
6143323--6143587	130	2.0	129	81	4	300	40	13	13	33	1.83
6143884--6143946	28	2.3	27	78	8	63	46	1	3	49	1.27
6144028--6144060	17	1.9	18	88	11	52	66	6	3	24	1.28
6148194--6148261	29	2.3	29	89	0	100	20	25	38	16	1.92
6148194--6148270	29	2.7	29	87	0	82	22	24	35	18	1.96
6155550--6155616	2	34.0	2	96	3	127	50	0	0	49	1.00
6162342--6162392	21	2.4	21	90	0	75	23	11	17	47	1.81
6167000--6167058	30	2.0	29	83	9	75	42	1	1	54	1.20
6167200--6167239	19	2.1	18	86	13	53	60	2	0	37	1.11
6168823--6169704	347	2.5	348	93	5	1485	29	5	25	39	1.79
6168823--6169704	175	5.0	179	94	5	1552	29	5	25	39	1.79
6169730--6169863	68	2.0	68	86	4	193	21	21	8	48	1.76
6177556--6177624	32	2.2	32	89	0	102	20	47	0	31	1.50
6177565--6177629	32	2.0	32	100	0	130	18	43	0	38	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6186583--6186640	29	2.0	29	86	0	80	15	36	25	22	1.94
6186683--6186729	14	3.4	14	87	0	67	25	36	29	8	1.86
6186735--6186760	10	2.6	10	100	0	52	19	26	46	7	1.77
6186809--6186922	29	3.9	29	94	0	183	21	28	35	14	1.92
6191796--6191903	55	2.0	55	92	0	180	27	13	12	45	1.81
6210335--6210387	19	2.8	19	97	0	97	43	24	16	15	1.87
6210375--6210482	20	5.4	20	88	0	144	37	18	24	19	1.93
6210335--6210484	20	7.6	20	87	0	115	39	20	22	18	1.93
6210471--6210524	20	2.7	20	94	0	90	53	18	16	11	1.72
6215595--6215655	25	2.4	28	76	18	69	59	0	1	39	1.08
6218640--6218693	21	2.6	21	93	0	90	25	14	27	31	1.95
6230925--6231008	32	2.7	32	73	12	84	34	16	16	32	1.92
6235677--6235731	24	2.3	25	84	9	71	40	12	0	47	1.42
6235677--6235739	25	2.6	24	80	9	58	41	14	0	44	1.45
6236224--6236385	64	2.5	64	78	5	157	25	23	17	33	1.96
6239588--6239634	22	2.2	22	92	3	78	55	0	0	44	0.99
6240049--6240089	21	2.0	21	95	0	73	51	0	7	41	1.30
6240731--6240783	20	2.9	17	79	17	61	30	0	0	69	0.88
6241802--6241870	26	2.6	26	76	17	70	18	13	0	68	1.21
6242886--6242920	16	2.2	16	100	0	70	25	8	34	31	1.86
6242891--6242928	16	2.4	16	90	0	58	26	7	39	26	1.83
6244494--6244733	95	2.7	94	85	10	306	30	19	18	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6246061--6246280	36	6.3	36	75	13	208	27	19	14	39	1.90
6246263--6246338	29	2.6	29	100	0	152	34	14	10	40	1.80
6246061--6246715	167	3.8	169	88	5	845	26	18	13	40	1.88
6246398--6246462	21	3.4	21	68	24	70	24	21	12	41	1.87
6246322--6246483	36	4.5	36	89	1	243	25	19	14	40	1.90
6246322--6246656	73	4.7	73	80	9	316	25	18	14	42	1.88
6246376--6246622	65	3.5	68	76	16	236	25	19	13	41	1.87
6246498--6246657	37	4.4	37	83	3	209	25	18	13	43	1.86
6246498--6246657	74	2.2	73	88	4	234	25	18	13	43	1.86
6246061--6246723	341	1.9	338	87	6	742	26	18	13	40	1.89
6246710--6246826	33	3.6	33	88	4	175	37	22	7	32	1.82
6246823--6247023	85	2.4	84	86	2	278	31	25	18	24	1.98
6247654--6247682	13	2.2	13	100	0	58	44	6	0	48	1.29
6248602--6248656	28	2.0	28	82	7	67	18	7	1	72	1.16
6250895--6250933	21	1.9	20	89	5	60	53	0	2	43	1.14
6260546--6260644	52	1.9	52	89	2	155	28	3	20	48	1.64
6263138--6263222	24	3.5	23	85	6	80	17	16	20	45	1.85
6263157--6263200	12	3.7	12	79	11	54	11	18	18	52	1.74
6263129--6263246	48	2.5	48	80	2	112	21	13	17	47	1.82
6263154--6263247	24	3.9	24	87	0	116	18	12	19	50	1.78
6263154--6263247	48	2.0	48	86	0	134	18	12	19	50	1.78
6263408--6263460	2	26.5	2	100	0	106	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6276772--6276828	25	2.2	25	81	9	60	49	10	5	35	1.60
6278531--6278573	6	7.2	6	83	0	50	37	0	13	48	1.43
6278531--6278572	12	3.5	12	86	0	57	38	0	11	50	1.40
6278532--6278573	18	2.3	18	91	0	66	38	0	11	50	1.40
6278540--6278570	16	1.9	16	100	0	62	38	0	9	51	1.35
6280366--6280419	21	2.5	21	93	3	90	35	18	20	25	1.95
6291950--6291983	16	2.1	16	94	0	59	32	8	26	32	1.87
6292734--6292765	15	2.1	16	94	5	57	50	18	25	6	1.70
6297520--6297584	32	2.2	27	72	23	67	13	4	29	52	1.61
6297845--6297886	21	2.0	22	85	4	59	11	16	19	52	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37