Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008527.1 Hibiscus syriacus cultivar Beakdansim tig00111402_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9057482

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   

This is table  37  of  37  ( 4336 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9026796--9026841
20
2.3
20
84
0
56
54
17
15
13
1.71
9026804--9026842
20
2.0
20
89
0
60
51
15
20
12
1.76
9027358--9027404
20
2.3
20
100
0
94
14
14
27
42
1.86
9027395--9027453
20
3.0
20
87
5
84
25
11
18
44
1.84
9027863--9027900
18
2.0
19
90
10
60
68
0
0
31
0.90
9027860--9027922
26
2.4
25
82
17
83
68
1
0
30
0.99
9032836--9032879
21
2.0
22
87
12
65
61
4
2
31
1.28
9046183--9046227
23
2.0
23
86
0
63
22
26
28
22
1.99
9046195--9046509
149
2.1
149
93
1
542
34
20
17
27
1.95
9046610--9046637
14
2.0
14
100
0
56
35
28
7
28
1.84
9048010--9048054
21
2.1
21
83
0
54
17
24
28
28
1.97
9051317--9051361
23
2.0
23
86
0
63
22
26
28
22
1.99
9051329--9051642
149
2.1
148
92
1
522
34
20
16
28
1.95
9051743--9051770
14
2.0
14
100
0
56
35
28
7
28
1.84
9053141--9053185
21
2.1
21
87
0
63
15
24
28
31
1.96
9056666--9056690
12
2.1
12
100
0
50
24
44
0
32
1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37

The End!