genome.fa.s8959.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008959.1 Hibiscus syriacus cultivar Beakdansim tig00112293_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4521124

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  1  of  21  ( 2431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2248--2287	21	1.9	21	89	0	62	37	7	2	52	1.43
22557--22595	15	2.5	15	84	15	53	58	0	33	7	1.26
26279--26408	41	3.1	41	71	14	122	34	13	17	33	1.90
26138--26416	83	3.4	83	82	1	335	33	16	16	34	1.91
26272--26400	42	3.1	42	74	13	131	31	13	17	37	1.89
26527--26717	40	4.7	40	74	4	123	25	16	16	41	1.88
26531--26717	81	2.3	80	80	8	200	25	16	16	41	1.88
26620--26811	40	4.7	42	76	8	148	26	16	18	38	1.92
26687--26811	41	3.0	42	77	6	137	27	16	20	35	1.94
31365--31409	3	15.0	3	85	0	54	4	37	28	28	1.77
31365--31409	18	2.5	18	92	0	72	4	37	28	28	1.77
33426--33463	17	2.3	17	86	4	51	63	2	0	34	1.09
34440--34492	24	2.2	24	89	0	79	9	35	9	45	1.69
34695--34774	40	2.1	38	83	9	99	36	12	16	35	1.86
34781--34853	24	3.0	24	88	4	67	10	15	24	49	1.76
34791--34846	14	4.3	14	82	17	75	8	14	25	51	1.70
34792--34866	24	3.1	23	90	3	96	12	12	21	54	1.69
35594--35689	10	10.7	10	67	28	56	7	13	22	56	1.62
35600--35685	16	5.1	16	81	13	109	5	13	24	55	1.60
35626--35675	6	9.2	6	75	20	56	2	16	28	54	1.53
35610--35659	22	2.3	22	89	3	75	4	16	26	54	1.59
35600--35675	37	2.0	38	92	2	127	5	14	25	55	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35755--35787	16	2.1	16	100	0	66	6	12	24	57	1.57
38008--38054	21	2.2	21	92	0	76	21	4	23	51	1.65
40673--40923	31	8.0	31	76	12	235	31	18	18	31	1.95
40698--40926	63	3.7	63	94	0	397	31	17	17	32	1.94
40674--40926	94	2.7	95	77	10	259	31	18	18	31	1.95
45650--45721	30	2.4	30	85	0	90	31	27	20	19	1.97
45727--45958	31	7.4	31	75	9	211	31	18	18	31	1.95
45773--45941	32	5.3	32	76	18	192	30	17	18	33	1.95
45733--45961	63	3.7	63	95	0	406	31	17	18	32	1.94
48045--48088	21	2.2	20	91	4	70	18	20	4	56	1.58
49842--49880	2	20.0	2	86	5	53	51	2	0	46	1.14
50695--50766	30	2.4	30	85	0	90	31	27	20	19	1.97
50758--51003	31	7.8	31	75	12	225	30	18	18	32	1.95
50817--50986	32	5.4	32	79	16	210	29	18	18	33	1.95
50778--51006	63	3.7	63	95	0	406	30	17	18	33	1.94
50758--51006	94	2.6	94	77	9	249	30	18	18	32	1.95
53089--53147	28	2.1	28	90	6	93	22	10	8	59	1.56
54296--54322	14	1.9	14	100	0	54	22	0	25	51	1.48
62720--62761	19	2.2	19	86	4	57	69	14	0	16	1.20
66965--67185	117	1.9	117	86	3	320	31	11	7	49	1.66
69210--69279	32	2.2	32	82	7	88	41	0	25	32	1.56
73365--73410	23	2.0	23	95	0	83	13	32	13	41	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73863--74004	71	2.0	71	100	0	284	28	28	16	26	1.97
74459--74493	3	11.7	3	100	0	70	0	34	0	65	0.93
76829--76860	3	10.7	3	100	0	64	68	0	0	31	0.90
77753--78120	175	2.0	181	90	5	588	47	8	2	41	1.49
82090--82130	8	5.2	8	82	5	57	34	0	29	36	1.58
82211--83444	128	9.7	128	93	2	2107	21	24	20	34	1.97
82211--83444	505	2.4	504	93	2	2109	21	24	20	34	1.97
83893--83950	24	2.5	23	83	8	64	62	5	0	32	1.18
88031--88070	20	2.0	20	100	0	80	45	5	15	35	1.68
88240--88565	163	2.0	163	100	0	652	33	18	26	22	1.97
90334--90460	20	6.4	19	78	13	73	37	22	17	22	1.94
90329--90504	80	2.2	80	93	0	307	40	22	16	20	1.91
90334--90520	100	1.9	100	85	6	263	39	22	16	20	1.92
90454--90541	20	4.3	20	82	1	95	40	25	13	20	1.89
90386--90541	60	2.6	61	76	11	142	40	23	15	21	1.91
90329--90529	80	2.5	79	89	5	296	39	22	15	21	1.91
90468--90618	40	3.9	39	78	12	125	37	23	10	27	1.88
90488--90618	39	3.3	39	82	8	133	36	24	9	29	1.88
90488--90618	19	6.7	20	82	8	128	36	24	9	29	1.88
90508--90618	58	1.9	59	81	5	136	36	24	8	30	1.84
91538--91591	24	2.2	24	93	0	90	24	18	16	40	1.90
91766--91790	3	8.3	3	100	0	50	64	0	36	0	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95707--95801	21	4.5	21	82	4	93	24	15	33	26	1.95
95683--95776	42	2.2	42	81	3	109	22	18	35	24	1.96
97956--98059	20	5.2	20	94	0	172	56	10	18	14	1.66
98089--98127	20	1.9	21	89	5	62	15	17	15	51	1.77
98469--98516	22	2.2	22	100	0	96	18	12	45	22	1.83
98678--99023	20	17.3	20	81	11	243	19	14	25	40	1.90
98678--99068	40	9.8	40	71	18	244	20	14	24	40	1.89
98678--99068	120	3.3	120	85	8	460	20	14	24	40	1.89
98678--99063	140	2.8	139	85	4	483	20	14	24	40	1.90
98857--99043	100	1.9	100	83	6	245	20	11	26	42	1.85
99015--99063	20	2.5	20	89	0	71	20	14	26	38	1.91
98837--99108	120	2.3	120	92	3	467	20	11	26	40	1.87
101724--101770	23	2.0	23	100	0	94	29	21	8	40	1.83
101837--101910	30	2.5	30	84	0	85	41	9	31	17	1.81
104563--104594	16	2.0	16	93	0	55	65	0	0	34	0.93
111455--111515	23	2.7	23	89	0	95	16	27	22	32	1.96
114143--114202	29	2.0	31	87	6	88	36	6	15	41	1.73
114382--114423	21	2.0	21	95	0	75	23	21	28	26	1.99
114452--114491	20	1.9	21	85	10	55	37	37	10	15	1.80
114706--114775	34	2.1	32	82	10	79	31	15	27	25	1.96
119841--119909	23	3.0	23	89	0	102	26	26	27	20	1.99
119925--120137	103	2.1	103	94	0	372	36	22	14	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121823--121867	21	2.1	21	84	8	56	15	22	28	33	1.95
122621--122672	22	2.4	22	77	6	52	25	9	19	46	1.80
122673--122732	23	2.6	23	78	0	66	20	25	20	35	1.96
131087--131198	53	2.1	53	86	0	152	54	8	13	24	1.65
133042--133080	14	2.8	14	100	0	78	25	0	28	46	1.53
144338--144375	18	2.1	18	90	0	58	13	34	2	50	1.55
145448--145493	22	2.1	22	91	0	74	34	4	23	36	1.75
150838--151186	80	4.3	79	94	2	572	22	19	25	32	1.97
151199--151232	17	2.0	17	94	0	59	29	14	23	32	1.94
152340--152384	20	2.2	20	84	7	56	40	17	26	15	1.90
152902--153053	45	3.7	43	69	23	128	36	11	22	29	1.89
152889--153129	78	3.1	78	89	2	349	37	10	23	28	1.88
157040--157261	45	5.5	43	69	23	167	31	12	26	28	1.93
157032--157272	79	3.1	79	92	0	385	34	12	25	27	1.92
158593--158647	2	31.0	2	73	23	52	49	0	0	50	1.00
158595--158640	7	6.6	7	76	18	51	50	0	0	50	1.00
158593--158648	12	4.8	12	79	16	64	48	0	0	51	1.00
158587--158648	28	2.1	30	88	11	94	45	1	0	53	1.10
159811--159844	2	17.0	2	93	0	59	47	0	0	52	1.00
169725--169774	13	4.0	12	76	7	55	80	2	18	0	0.82
169726--169781	25	2.2	26	90	3	87	82	1	14	1	0.84
169726--169781	12	4.5	12	76	14	51	82	1	14	1	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
170894--171098	111	1.8	111	85	2	286	34	20	19	25	1.96
171836--171880	14	3.3	14	75	25	51	46	0	0	53	1.00
171831--171891	21	3.0	20	76	6	61	44	0	0	55	0.99
171830--171889	28	2.2	26	83	13	77	43	0	0	56	0.99
171838--171891	12	4.6	12	75	11	58	46	0	0	53	1.00
173241--173295	21	2.6	22	75	11	62	10	12	1	74	1.15
174664--174821	21	7.8	20	72	7	86	38	24	17	18	1.93
174789--175017	20	11.4	20	81	5	230	37	25	17	19	1.94
175710--175756	24	2.0	24	87	8	69	25	14	21	38	1.92
178217--178382	33	4.8	34	82	10	192	46	19	21	13	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21