genome.fa.s8959.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008959.1 Hibiscus syriacus cultivar Beakdansim tig00112293_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4521124

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  4  of  21  ( 2431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
575572--575964	86	4.6	85	79	6	303	29	15	22	32	1.95
575627--575964	129	2.6	129	78	6	301	28	15	22	33	1.95
575935--576048	44	2.6	42	82	6	129	28	22	22	25	1.99
575950--576096	44	3.4	42	81	8	145	31	20	19	28	1.97
576411--576456	21	2.2	21	88	0	65	4	28	19	47	1.68
584489--584948	42	11.0	42	86	1	591	26	21	16	35	1.94
586393--586568	83	2.1	82	79	11	191	30	22	15	31	1.95
586451--586568	42	2.9	41	75	14	116	31	24	12	31	1.93
589153--589186	16	2.1	16	94	0	59	32	8	26	32	1.87
594268--594516	38	6.4	36	76	16	191	45	3	10	40	1.56
594243--594568	39	8.5	36	75	16	248	44	3	10	41	1.55
594254--594568	78	4.1	75	78	12	293	45	3	10	41	1.54
594528--594582	26	2.2	26	87	6	78	40	1	9	49	1.45
594555--594622	35	1.9	35	87	0	100	44	2	5	47	1.42
594456--594635	97	1.9	97	82	6	231	43	2	9	44	1.51
594677--594732	16	3.4	16	85	14	71	37	0	1	60	1.07
599376--599401	2	13.0	2	100	0	52	50	0	0	50	1.00
599391--599436	23	2.0	24	91	4	76	41	4	13	41	1.63
599498--599551	26	2.1	26	89	6	83	51	3	3	40	1.37
599504--599560	26	2.2	27	90	9	93	45	3	5	45	1.43
599333--599590	65	3.9	64	76	14	222	44	2	8	44	1.47
599384--599600	63	3.4	63	80	9	194	45	2	6	44	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
599650--599695	9	5.6	9	80	19	64	39	0	0	60	0.97
599650--599695	11	4.5	10	80	20	51	39	0	0	60	0.97
599654--599710	16	3.5	16	86	13	73	36	0	1	61	1.07
599654--599711	9	7.1	8	74	21	50	36	0	1	62	1.06
604634--604672	18	2.1	19	85	4	53	64	5	7	23	1.40
608126--608165	6	7.0	6	88	11	66	82	0	0	17	0.67
608126--608165	11	3.5	11	96	3	71	82	0	0	17	0.67
618360--618408	2	25.0	2	91	4	82	48	2	0	48	1.12
620866--620944	39	2.0	39	97	0	149	31	18	17	31	1.95
623234--623294	32	1.9	32	93	0	104	34	1	4	59	1.29
624163--624253	2	45.5	2	100	0	182	49	0	0	50	1.00
624386--624441	23	2.4	23	78	0	67	37	28	19	14	1.91
624541--624729	45	4.2	45	82	2	200	33	19	9	37	1.84
630967--631031	14	4.4	15	74	14	55	41	20	4	33	1.72
630968--631143	45	3.9	45	86	0	217	35	20	7	35	1.82
642873--643383	58	8.8	58	92	0	824	33	13	18	34	1.90
643531--643838	68	4.5	68	94	0	508	32	14	23	30	1.94
645222--645340	59	2.0	59	98	0	229	25	25	26	22	2.00
647890--647943	27	2.1	27	82	6	67	25	5	1	66	1.23
657530--657568	17	2.4	17	95	4	71	43	0	5	51	1.24
659751--659798	22	2.1	23	81	11	55	39	25	10	25	1.87
659785--659991	105	2.0	105	85	1	281	37	23	16	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
663497--663538	22	1.9	22	100	0	84	35	19	0	45	1.50
663530--663575	23	2.0	24	91	4	76	43	0	2	54	1.12
672896--672954	21	2.8	21	89	0	91	18	40	30	10	1.84
675338--675413	32	2.4	32	77	4	82	23	23	15	36	1.94
675681--675734	23	2.3	24	96	3	101	40	0	11	48	1.39
675810--675852	22	1.9	23	85	4	61	41	2	13	41	1.57
675985--676024	11	3.5	11	83	6	53	47	5	7	40	1.54
682186--682266	23	3.7	23	83	13	86	22	25	28	23	1.99
687783--687893	6	19.7	6	71	22	89	50	0	0	48	1.06
687781--687922	50	2.9	47	80	13	155	47	0	1	50	1.15
688749--688803	20	2.8	20	94	0	92	25	16	30	27	1.96
689606--689698	32	3.0	31	79	7	98	24	20	21	33	1.97
689604--689700	31	3.1	31	78	8	106	23	19	21	35	1.96
690484--690526	22	2.0	22	85	0	59	23	16	16	44	1.86
690764--690790	13	2.1	13	100	0	54	62	0	0	37	0.95
690765--690841	15	5.3	15	75	13	54	53	1	3	41	1.27
690817--690890	21	3.5	21	90	0	112	48	5	5	40	1.49
690930--691036	20	5.2	21	72	24	86	42	7	6	42	1.58
690974--691018	17	2.5	17	89	7	63	42	4	6	46	1.50
691371--691540	90	1.9	88	93	2	295	38	10	6	44	1.65
692746--692777	7	4.6	7	92	0	55	21	0	31	46	1.52
692710--692777	14	4.9	14	80	5	66	27	1	26	44	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
692827--693031	2	107.5	2	70	21	138	45	2	1	50	1.23
692910--692934	9	2.8	9	100	0	50	36	0	0	64	0.94
693653--693686	15	2.2	15	89	5	50	26	17	20	35	1.95
705277--705318	15	2.9	14	89	10	50	57	2	0	40	1.12
705287--705318	15	2.1	15	100	0	64	59	0	0	40	0.97
705407--705440	17	2.0	17	100	0	68	29	11	23	35	1.90
709802--709900	33	3.0	33	86	7	137	26	13	23	37	1.91
714672--714802	33	4.0	33	92	3	219	24	14	23	37	1.92
714672--714802	65	2.0	67	92	3	221	24	14	23	37	1.92
718291--718329	20	2.0	20	94	0	69	33	5	2	58	1.33
719219--719269	2	25.5	2	100	0	102	49	0	0	50	1.00
719285--719387	41	2.6	40	88	8	149	47	2	5	43	1.42
719365--719416	26	2.0	27	88	3	79	42	3	7	46	1.51
719298--719553	102	2.5	102	77	14	276	43	3	6	46	1.47
719341--719464	61	2.0	61	87	9	173	44	3	6	45	1.45
719392--719503	38	3.1	37	82	10	149	41	4	7	46	1.51
719465--719520	27	2.2	26	90	6	87	37	5	7	50	1.53
722005--722053	2	24.5	2	100	0	98	48	0	0	51	1.00
722090--722119	13	2.3	13	94	0	51	30	6	3	60	1.39
722782--722832	26	2.0	24	85	7	66	37	3	7	50	1.50
722799--722848	24	2.1	24	84	0	64	42	2	8	48	1.44
733083--733117	6	5.8	6	93	0	52	34	22	17	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
736555--736680	62	2.0	63	98	1	245	38	12	11	36	1.80
736829--736879	15	3.4	15	79	15	61	72	0	7	19	1.08
736791--736850	31	1.9	32	83	12	81	68	0	10	21	1.19
736852--736899	25	2.0	24	83	4	60	68	0	8	22	1.16
738024--738093	3	21.7	3	85	11	70	71	0	1	27	0.94
738020--738093	19	3.8	19	83	8	96	71	0	1	27	0.94
738027--738094	16	4.1	16	81	12	77	72	0	1	26	0.94
738180--738219	19	2.0	20	85	4	55	35	5	5	55	1.44
738291--738368	33	2.3	34	82	8	97	44	5	3	46	1.43
738354--738385	2	16.5	2	93	6	57	50	0	0	50	1.00
738286--738366	32	2.6	32	80	9	94	46	6	3	43	1.46
739115--739661	84	6.5	83	84	4	625	23	19	24	33	1.97
739115--739907	168	4.9	167	80	8	812	23	19	24	33	1.97
739115--739946	252	3.4	249	78	8	836	23	19	24	33	1.97
739592--739727	70	1.9	70	81	8	161	20	19	22	37	1.94
739669--739946	79	3.5	79	87	2	362	24	19	23	32	1.97
741062--741323	95	2.7	95	85	4	321	32	17	17	32	1.94
743899--743930	7	4.4	7	92	7	55	75	0	0	25	0.81
743898--743930	15	2.2	15	100	0	66	75	0	0	24	0.80
743943--743996	15	3.7	15	80	14	69	74	0	7	18	1.05
745106--745144	3	13.7	3	89	10	64	71	0	0	28	0.86
745109--745173	11	6.2	11	86	10	75	78	0	0	21	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
745105--745176	25	2.8	26	85	6	94	77	0	0	22	0.76
745227--745330	30	3.2	30	80	17	111	45	9	3	41	1.55
745297--745322	13	2.0	13	100	0	52	46	7	7	38	1.61
745199--745435	106	2.2	104	82	11	270	45	6	3	43	1.48
745359--745437	34	2.4	33	83	8	99	44	6	5	44	1.51
745400--745468	29	2.4	30	76	9	83	39	7	5	47	1.55
746000--746211	78	2.7	78	89	1	311	43	13	7	35	1.71
746470--746858	183	2.1	183	89	0	589	44	13	15	26	1.84
747215--747686	200	2.4	199	83	5	596	39	15	14	30	1.87
747734--747972	87	2.7	87	88	1	354	34	14	9	42	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21