genome.fa.s8959.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008959.1 Hibiscus syriacus cultivar Beakdansim tig00112293_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4521124

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  7  of  21  ( 2431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1190927--1190987	32	1.9	32	96	0	113	44	19	16	19	1.87
1191085--1191419	166	2.0	167	98	0	654	36	9	14	40	1.78
1193842--1193957	58	2.0	58	100	0	232	24	24	25	25	2.00
1194524--1194641	54	2.2	54	86	3	166	37	18	19	24	1.94
1194524--1194685	54	3.0	54	81	5	157	38	16	19	25	1.92
1195054--1195155	22	4.6	22	88	0	150	32	15	11	40	1.84
1195859--1195972	45	2.5	45	81	2	138	24	22	21	31	1.98
1195806--1196091	121	2.4	121	87	4	402	26	21	18	33	1.97
1195980--1196128	45	3.3	45	85	0	199	28	21	17	32	1.96
1196025--1196365	122	2.8	122	90	0	529	25	21	19	34	1.96
1196147--1196251	45	2.3	45	86	0	147	27	20	19	33	1.96
1195859--1196250	167	2.4	166	87	2	563	26	21	19	33	1.97
1196269--1196395	45	2.8	45	87	2	184	22	22	18	36	1.95
1196577--1196643	3	21.7	3	84	3	80	37	1	0	61	1.05
1197460--1197515	20	2.8	20	81	2	69	57	17	17	7	1.62
1198528--1198574	22	2.2	21	84	3	58	38	2	0	59	1.09
1198699--1198728	2	15.0	2	100	0	60	50	0	0	50	1.00
1208135--1208214	33	2.4	34	85	10	119	35	5	17	42	1.71
1209184--1209241	23	2.6	23	83	2	82	39	22	12	25	1.89
1209998--1210028	16	1.9	16	93	0	53	29	32	12	25	1.93
1210731--1210768	20	1.9	20	88	0	58	31	21	13	34	1.91
1212222--1212273	26	2.0	27	96	3	97	57	13	11	17	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1214739--1214772	18	1.9	18	88	5	52	79	2	14	2	0.97
1220682--1220988	153	2.0	153	98	1	598	30	13	29	26	1.94
1222342--1222524	93	2.0	92	97	1	348	21	13	19	46	1.83
1222507--1222539	15	2.2	15	100	0	66	0	6	27	66	1.15
1222418--1222720	104	3.0	105	87	10	438	19	12	20	47	1.81
1222522--1222726	92	2.3	91	95	3	371	21	11	20	46	1.82
1222342--1222720	196	1.9	199	96	2	710	20	12	19	46	1.82
1222770--1222836	19	3.4	20	83	8	75	47	26	14	10	1.77
1222787--1222899	19	6.5	19	76	19	129	49	27	15	7	1.71
1222806--1222899	33	2.8	33	90	4	145	50	26	15	7	1.71
1222857--1222883	14	1.9	14	100	0	54	48	29	14	7	1.71
1222786--1222899	52	2.2	51	83	7	140	50	27	15	7	1.70
1222895--1223067	19	9.6	19	75	12	150	11	19	21	47	1.81
1222917--1222973	14	3.7	14	72	20	51	12	21	21	45	1.83
1222900--1222992	33	2.8	33	91	0	159	11	20	20	47	1.81
1222895--1223067	33	4.8	38	80	5	150	11	19	21	47	1.81
1225093--1225213	19	6.8	19	75	18	118	49	15	22	12	1.78
1225101--1225193	33	2.8	33	91	0	159	49	17	21	11	1.78
1225222--1225464	19	13.7	19	76	18	265	14	22	18	44	1.85
1225246--1225411	33	4.8	33	74	17	167	13	23	17	45	1.83
1225208--1225419	105	2.0	105	91	0	343	16	23	17	42	1.88
1225299--1225478	33	5.2	33	70	18	152	13	22	18	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1225228--1225464	53	4.5	53	96	2	424	13	22	18	45	1.84
1227952--1227998	24	2.0	24	87	8	69	38	21	14	25	1.92
1228691--1228919	20	11.4	20	87	1	253	19	17	25	36	1.94
1236779--1236828	5	9.6	5	97	2	82	0	20	56	24	1.43
1237072--1237102	16	1.9	16	93	0	53	58	6	6	29	1.48
1239322--1239439	40	2.8	42	82	7	134	28	18	29	22	1.98
1239366--1239697	134	2.5	133	83	2	414	25	18	29	26	1.98
1239826--1239932	30	3.6	30	85	2	117	40	13	21	25	1.89
1239857--1240141	29	9.5	29	73	12	173	41	13	14	30	1.84
1240095--1240329	68	3.5	65	78	12	244	40	14	12	33	1.83
1240295--1240367	36	2.0	36	86	5	103	36	13	9	39	1.78
1240376--1240802	211	2.0	208	85	5	576	40	11	16	31	1.84
1240376--1240802	104	4.1	103	84	7	556	40	11	16	31	1.84
1240789--1240930	72	2.0	72	87	2	205	40	11	17	30	1.85
1240811--1240930	37	3.3	37	87	3	181	39	10	16	33	1.84
1241494--1241561	32	2.1	32	83	8	84	30	23	14	30	1.94
1242592--1242677	14	6.2	13	71	23	61	0	16	8	75	1.03
1242586--1242677	26	3.4	25	78	12	87	0	16	8	75	1.04
1243967--1244020	12	4.2	12	84	11	72	53	14	16	14	1.73
1246508--1246567	23	2.6	23	89	0	93	18	26	28	26	1.98
1250136--1250363	123	1.9	123	87	3	343	47	15	13	23	1.80
1250377--1250440	29	2.2	29	83	10	78	57	3	9	29	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1258775--1258888	55	2.1	55	100	0	228	42	13	14	30	1.83
1263255--1263313	27	2.1	28	84	3	75	25	10	16	47	1.78
1264309--1264402	14	6.6	14	82	3	107	22	21	30	25	1.98
1264309--1264402	29	3.3	29	86	1	127	22	21	30	25	1.98
1264305--1264402	43	2.3	42	83	3	115	22	21	31	24	1.98
1264877--1264946	29	2.4	29	97	0	131	24	25	24	25	2.00
1264972--1265037	23	2.9	23	88	0	87	37	19	18	24	1.93
1266750--1266788	18	2.1	18	85	4	51	58	0	2	38	1.12
1272828--1272882	27	2.0	27	96	0	101	34	16	23	25	1.95
1282242--1282462	43	5.2	41	75	9	187	33	18	22	24	1.96
1282263--1282454	41	4.5	42	76	13	164	33	18	21	27	1.96
1282260--1282462	84	2.4	83	86	6	277	33	18	21	26	1.96
1290776--1290879	44	2.4	43	82	7	124	38	21	16	24	1.93
1290861--1290957	41	2.4	41	87	0	131	37	22	17	22	1.94
1291068--1291196	41	3.2	40	79	10	120	41	16	13	27	1.86
1291217--1291337	41	3.0	40	69	17	95	30	17	19	33	1.94
1291178--1291337	82	2.0	82	81	7	191	30	18	19	31	1.95
1297256--1297282	2	13.5	2	100	0	54	48	0	0	51	1.00
1297751--1297841	3	30.7	3	93	6	159	65	0	0	34	0.93
1298473--1298513	3	14.0	3	94	5	75	65	0	0	34	0.93
1298469--1298512	20	2.3	19	92	7	79	68	0	0	31	0.90
1298779--1299031	114	2.2	114	84	5	334	27	21	15	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1305558--1305639	23	3.7	23	86	3	114	28	28	24	19	1.99
1306603--1306643	21	2.0	21	90	9	66	31	17	26	24	1.97
1315727--1315756	2	15.5	2	93	6	53	46	0	0	53	1.00
1316207--1316250	3	15.0	3	95	4	81	65	0	0	34	0.93
1318683--1318913	60	3.8	60	75	11	179	38	14	15	32	1.88
1319778--1319960	75	2.4	75	90	1	287	39	10	15	33	1.83
1319935--1320006	23	3.1	23	89	0	108	36	13	12	37	1.83
1319981--1320156	75	2.3	75	89	1	264	39	13	14	32	1.85
1319793--1320251	196	2.3	196	89	1	679	37	13	15	33	1.87
1320131--1320181	23	2.2	23	96	0	93	39	17	11	31	1.86
1320131--1320202	23	3.1	23	86	7	85	37	19	13	29	1.90
1321843--1321946	35	2.9	36	75	16	126	42	5	3	48	1.45
1322936--1322978	16	2.7	15	79	10	50	53	0	2	44	1.13
1324173--1324211	19	2.0	19	85	5	51	5	25	0	69	1.09
1325182--1325251	20	3.5	20	77	11	54	34	14	20	31	1.92
1327313--1327366	21	2.7	20	91	5	90	16	44	22	16	1.86
1333122--1333182	23	2.8	22	85	7	81	21	36	22	19	1.95
1338358--1338436	34	2.3	34	79	12	99	39	0	16	44	1.48
1339907--1339973	23	2.9	23	81	0	89	31	23	26	17	1.97
1340932--1340961	2	15.0	2	100	0	60	50	50	0	0	1.00
1345110--1345169	23	2.6	23	78	0	75	35	21	23	20	1.96
1345740--1345818	40	2.0	39	90	7	124	40	18	0	40	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1346212--1346245	2	17.0	2	100	0	68	50	0	0	50	1.00
1348349--1348463	39	2.9	39	82	6	144	19	25	24	31	1.98
1358069--1358405	169	2.0	167	97	2	631	31	18	21	28	1.97
1359210--1359799	287	2.1	285	94	5	1041	46	13	13	26	1.80
1360199--1360278	33	2.4	33	80	10	92	28	21	16	33	1.95
1360327--1360773	44	10.1	44	69	4	209	30	20	20	28	1.98
1360359--1360749	89	4.4	89	69	5	261	30	20	20	27	1.98
1360267--1360773	133	3.8	133	93	1	820	29	21	20	28	1.98
1361586--1361623	18	2.1	18	100	0	76	10	34	5	50	1.59
1361618--1361652	6	5.7	6	93	6	61	0	14	0	85	0.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21