genome.fa.s8959.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008959.1 Hibiscus syriacus cultivar Beakdansim tig00112293_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4521124

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  8  of  21  ( 2431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1361617--1361652	13	2.8	13	95	4	65	0	13	0	86	0.58
1370099--1370540	223	2.0	218	95	4	789	27	25	22	25	2.00
1371680--1371989	158	2.0	153	94	3	550	40	17	11	30	1.85
1373178--1373215	12	3.1	13	85	11	53	71	5	2	21	1.19
1373240--1373277	16	2.3	18	86	13	55	71	2	2	23	1.12
1379607--1379686	41	2.0	41	87	0	115	30	20	17	32	1.95
1381660--1381716	30	1.9	30	82	7	71	28	22	3	45	1.69
1389051--1389222	85	2.0	85	97	0	326	32	17	23	26	1.96
1391269--1391314	12	3.8	12	75	18	51	73	15	8	2	1.16
1396648--1396685	10	3.8	10	80	13	51	36	10	18	34	1.85
1396653--1396691	20	2.0	20	94	0	69	33	10	20	35	1.86
1422943--1422979	16	2.3	16	90	0	56	32	16	18	32	1.93
1423158--1423300	59	2.4	62	75	8	150	34	6	2	57	1.36
1423326--1423462	29	4.7	29	86	3	168	37	3	1	56	1.26
1424076--1424105	15	2.1	15	93	6	53	16	0	13	70	1.18
1425670--1425909	112	2.1	112	86	1	329	30	12	11	45	1.77
1425991--1426634	75	8.8	75	80	8	707	31	12	13	41	1.82
1425991--1426634	146	4.4	148	79	9	719	31	12	13	41	1.82
1425991--1426634	221	2.9	218	81	5	773	31	12	13	41	1.82
1430489--1430529	21	2.0	21	100	0	82	41	9	19	29	1.83
1433192--1433369	44	4.0	44	87	4	252	32	15	22	29	1.94
1433908--1433948	19	2.2	19	86	8	57	0	19	2	78	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1439698--1439733	16	2.2	16	90	0	54	58	0	19	22	1.40
1440110--1440176	17	3.6	18	77	15	73	32	2	13	50	1.56
1441569--1441614	23	2.0	23	83	8	58	76	2	4	17	1.06
1443422--1443453	17	1.9	17	93	6	57	15	25	0	59	1.36
1444430--1444481	25	2.1	25	92	0	86	21	21	26	30	1.98
1445293--1445362	29	2.4	29	83	7	79	55	0	11	32	1.36
1446698--1446753	18	2.9	19	85	12	71	57	0	1	41	1.09
1446695--1446754	30	2.1	27	82	14	68	58	0	1	40	1.08
1446940--1447042	42	2.5	42	84	4	120	36	22	19	21	1.95
1454146--1454258	57	1.9	57	96	3	208	36	16	15	30	1.91
1456096--1456158	27	2.5	25	82	17	69	58	1	1	38	1.17
1461850--1461889	18	2.3	17	86	4	53	15	27	0	57	1.38
1461950--1462210	130	2.0	130	99	0	513	36	13	18	31	1.90
1462243--1462342	50	2.0	50	100	0	200	36	12	28	24	1.91
1462548--1462763	81	2.6	82	83	4	267	29	16	23	30	1.96
1468294--1468390	47	2.0	48	98	2	187	27	18	8	45	1.78
1468767--1469091	161	2.0	163	98	1	636	29	17	21	32	1.96
1473333--1473385	21	2.4	21	81	6	52	49	15	32	3	1.62
1473367--1473407	21	2.0	21	85	0	55	43	17	34	4	1.70
1473895--1474018	43	2.9	43	86	7	164	33	27	18	20	1.96
1473994--1474044	26	2.0	26	84	0	66	41	37	7	13	1.74
1476421--1476467	18	2.5	18	86	6	58	29	19	14	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1477385--1477438	24	2.2	24	86	0	72	20	14	20	44	1.86
1479693--1479728	18	2.0	18	94	0	63	55	25	2	16	1.55
1479899--1479955	29	2.0	29	100	0	114	24	15	28	31	1.96
1479902--1479963	29	2.1	29	87	0	88	29	17	27	25	1.98
1479974--1480038	20	3.2	20	82	0	76	16	16	27	38	1.91
1480097--1480244	64	2.3	64	90	1	226	52	16	2	29	1.55
1480226--1480259	14	2.5	14	90	4	52	52	17	0	29	1.45
1481626--1481691	21	3.2	20	77	10	69	30	19	31	18	1.96
1482095--1482142	21	2.3	21	81	0	60	29	33	14	22	1.94
1484217--1484254	20	2.0	20	84	5	51	44	13	15	26	1.83
1494244--1494295	24	2.2	24	89	6	79	25	17	21	36	1.94
1498766--1498818	15	3.4	15	77	10	52	41	1	0	56	1.10
1498768--1498819	17	3.2	16	75	10	52	40	1	0	57	1.10
1499243--1499284	17	2.5	17	96	0	75	19	42	23	14	1.87
1501033--1501093	23	2.7	23	92	2	97	24	26	27	21	1.99
1501682--1501751	34	2.1	32	89	5	104	21	31	15	31	1.95
1502034--1502075	21	2.0	21	95	0	75	26	28	21	23	1.99
1502274--1502364	31	3.0	31	95	3	159	42	16	6	34	1.74
1507193--1507253	23	2.7	23	92	2	97	24	26	27	21	1.99
1511192--1511256	31	2.1	31	82	5	78	36	12	10	40	1.78
1511342--1511518	58	3.0	58	90	2	275	31	9	18	40	1.82
1513261--1513566	152	2.0	153	99	0	605	20	7	32	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1513744--1513812	31	2.3	31	89	2	113	33	23	14	28	1.94
1515100--1515155	24	2.3	25	76	14	64	35	19	5	39	1.75
1516940--1516999	30	2.0	30	100	0	120	10	6	30	53	1.60
1523892--1523934	2	21.0	2	95	4	77	48	2	0	48	1.14
1533044--1533097	20	2.6	20	75	16	56	42	0	0	57	0.98
1533191--1533235	23	2.0	23	90	0	72	44	0	2	53	1.13
1533192--1533260	23	3.0	23	82	6	68	46	0	2	50	1.16
1533185--1533264	35	2.4	34	73	23	80	43	0	2	53	1.14
1533230--1533310	19	4.3	19	72	20	64	48	1	1	49	1.17
1533392--1533440	22	2.2	22	88	0	71	46	0	2	51	1.12
1547347--1547401	23	2.2	26	81	9	71	54	0	3	41	1.18
1547451--1547498	25	2.0	24	88	12	71	58	0	0	41	0.98
1548997--1549023	2	13.5	2	100	0	54	48	0	0	51	1.00
1549026--1549073	3	16.0	3	95	0	87	64	0	0	35	0.94
1555742--1555783	20	2.0	21	86	4	59	45	21	16	16	1.86
1556524--1556550	2	13.5	2	100	0	54	48	0	0	51	1.00
1558878--1558988	49	2.3	49	98	0	213	38	17	9	34	1.83
1558878--1559013	49	2.9	47	90	7	181	38	15	10	35	1.81
1564538--1564635	42	2.3	42	87	0	133	20	14	23	41	1.89
1564539--1564606	21	3.2	20	66	22	50	19	11	26	42	1.85
1566998--1567377	177	2.1	183	89	5	589	42	2	8	45	1.50
1575184--1575286	36	2.9	36	86	0	152	45	14	14	25	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1577066--1577100	2	17.5	2	100	0	70	51	0	0	48	1.00
1577351--1577419	18	3.7	18	77	7	75	28	30	21	18	1.97
1599912--1599979	21	3.3	20	76	10	57	79	4	11	4	1.02
1608817--1608889	36	2.0	36	92	5	121	42	6	20	30	1.78
1612844--1612887	23	1.9	23	90	0	70	20	50	15	13	1.78
1615380--1615437	12	4.8	12	78	0	62	13	15	20	50	1.78
1618163--1618235	36	2.0	36	97	0	137	42	8	20	28	1.81
1620004--1620086	24	3.5	24	75	3	78	21	14	16	46	1.83
1620045--1620097	12	4.5	11	75	15	52	16	15	16	50	1.78
1620047--1620097	17	2.8	18	72	22	52	15	15	17	50	1.78
1620004--1620097	24	3.9	24	73	2	73	21	14	15	47	1.82
1620004--1620114	48	2.3	48	81	3	116	22	12	15	49	1.78
1620455--1620530	36	2.1	36	97	0	143	43	14	10	31	1.79
1620835--1620870	2	18.0	2	100	0	72	50	0	0	50	1.00
1622099--1622602	159	3.2	159	85	1	679	34	14	10	39	1.81
1623981--1624052	30	2.4	30	82	11	78	37	4	8	50	1.52
1629935--1630275	170	2.0	169	99	0	673	36	9	12	41	1.76
1631527--1631588	23	2.7	23	100	0	124	33	9	17	38	1.83
1635510--1635551	21	2.0	22	90	4	68	42	14	14	28	1.84
1635550--1636029	200	2.4	200	83	3	572	34	13	15	37	1.86
1636542--1636571	12	2.5	12	94	0	51	30	10	10	50	1.69
1642524--1642553	12	2.5	12	94	0	51	30	10	10	50	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1643217--1645877	200	13.3	200	92	0	4382	26	14	16	41	1.87
1646094--1646140	24	2.0	24	86	0	67	48	17	2	31	1.58
1649008--1649057	19	2.6	19	93	0	82	58	10	2	30	1.42
1650526--1650564	18	2.2	18	90	0	60	7	38	0	53	1.30
1651247--1651302	24	2.5	21	76	18	58	50	7	1	41	1.40
1651758--1651789	13	2.5	13	100	0	64	34	31	6	28	1.82
1652575--1652635	19	3.3	17	86	11	77	39	13	0	47	1.42
1653023--1653683	182	3.6	182	86	1	876	27	16	12	43	1.83
1655329--1655371	21	2.0	21	100	0	86	34	9	32	23	1.87
1667291--1667337	18	2.5	20	83	12	57	27	0	0	72	0.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21