genome.fa.s8959.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008959.1 Hibiscus syriacus cultivar Beakdansim tig00112293_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4521124

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  10  of  21  ( 2431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1863644--1863674	2	15.5	2	100	0	62	51	0	0	48	1.00
1863839--1863938	24	4.2	24	71	5	85	46	17	14	23	1.83
1866421--1866445	12	2.1	12	100	0	50	16	28	40	16	1.89
1866414--1866455	20	2.2	19	95	4	75	19	26	40	14	1.89
1866440--1866499	13	4.5	13	77	8	66	11	20	50	18	1.77
1866448--1866473	5	5.2	5	100	0	52	0	23	57	19	1.40
1866440--1866545	30	3.6	31	88	7	159	13	16	51	17	1.76
1868653--1868752	24	4.2	24	71	5	85	46	17	14	23	1.83
1871191--1871230	7	5.4	7	88	11	62	25	27	35	12	1.92
1871192--1871230	15	2.6	15	100	0	78	25	25	35	12	1.92
1871233--1871288	13	3.9	13	75	20	58	14	19	48	17	1.81
1871220--1871287	18	4.1	18	74	18	83	13	20	48	17	1.80
1871192--1871233	8	5.5	8	91	8	70	23	26	35	14	1.93
1871220--1871286	31	2.2	31	94	0	116	13	19	49	17	1.80
1874874--1874912	18	2.2	18	90	0	60	38	10	0	51	1.36
1876757--1876811	28	2.0	28	82	7	67	34	20	7	38	1.80
1877383--1877409	13	2.1	13	100	0	54	77	0	14	7	0.97
1877682--1877711	10	3.0	10	95	0	51	33	20	36	10	1.86
1878995--1879048	27	2.0	27	96	0	99	27	18	31	22	1.97
1886027--1886428	201	2.0	202	99	0	797	26	22	18	32	1.97
1888866--1888926	29	2.1	29	100	0	122	37	18	19	24	1.94
1895457--1895495	2	19.5	2	100	0	78	0	0	48	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1898229--1898274	23	2.0	23	91	0	74	45	10	2	41	1.51
1901262--1901315	23	2.4	22	81	9	56	24	3	11	61	1.46
1902041--1902065	12	2.1	12	100	0	50	36	8	0	56	1.29
1902056--1902095	14	3.1	13	89	7	55	17	10	0	72	1.11
1904741--1904765	10	2.5	10	100	0	50	16	0	0	84	0.63
1912462--1912498	15	2.3	17	86	9	51	86	0	5	8	0.70
1918226--1918275	21	2.4	21	83	6	66	26	4	18	52	1.63
1919055--1919096	2	21.5	2	95	4	77	50	0	0	50	1.00
1923668--1923737	36	1.9	36	94	0	122	52	12	15	18	1.74
1939954--1940000	18	2.6	18	93	6	78	14	27	27	29	1.96
1942606--1942666	15	4.1	15	74	14	54	34	3	11	50	1.55
1942700--1943627	286	3.2	282	77	8	848	32	14	6	46	1.70
1948504--1948623	37	3.2	37	96	2	213	11	10	39	38	1.77
1948272--1948847	301	1.9	294	86	9	817	21	11	30	36	1.89
1957319--1957499	84	2.2	82	79	2	191	34	16	20	28	1.94
1958968--1959186	42	5.2	41	79	7	163	31	25	15	28	1.95
1958985--1959177	41	4.6	43	78	9	175	33	25	13	27	1.93
1958985--1959202	84	2.6	84	86	2	269	32	26	14	27	1.95
1958999--1959196	43	4.7	41	75	10	150	32	24	13	28	1.94
1963254--1963349	43	2.3	43	80	5	106	39	25	11	23	1.88
1963301--1963572	129	2.1	129	81	0	310	33	25	18	21	1.96
1963301--1963564	43	6.1	43	81	0	276	34	25	18	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1972394--1972426	16	2.0	17	88	5	50	15	15	27	42	1.86
1982671--1982818	72	2.1	71	93	1	251	27	15	9	47	1.76
1983420--1983515	43	2.2	43	87	7	149	33	20	19	26	1.97
1987824--1987900	21	3.4	22	71	18	61	28	20	24	25	1.99
1987824--1987920	44	2.2	44	83	10	119	27	18	23	29	1.98
1996884--1996908	13	1.9	13	100	0	50	40	12	24	24	1.88
1997954--1998007	28	2.0	27	81	3	63	62	3	3	29	1.29
2000292--2000337	12	3.6	12	81	16	56	45	17	19	17	1.85
2000298--2000338	12	3.1	13	80	19	57	46	14	17	21	1.84
2002627--2002666	21	1.9	21	94	0	71	30	15	7	47	1.72
2002661--2002759	33	3.0	33	89	1	137	34	6	13	46	1.67
2002770--2002799	13	2.3	13	94	0	51	40	3	10	46	1.54
2002995--2003047	21	2.5	21	93	0	88	22	20	26	30	1.98
2003218--2003274	15	3.7	15	79	9	69	38	12	7	42	1.70
2003237--2003270	18	1.9	18	94	5	61	44	11	5	38	1.65
2011353--2011394	22	2.0	21	86	13	59	64	7	0	28	1.20
2011728--2011778	19	2.7	19	96	0	93	15	1	41	41	1.58
2012346--2012414	3	23.0	3	100	0	138	33	0	0	66	0.92
2024705--2024742	20	2.0	19	90	10	60	26	15	34	23	1.95
2024705--2024772	35	1.9	35	85	5	93	30	17	29	22	1.97
2033480--2033510	15	2.1	15	100	0	62	51	22	25	0	1.48
2033527--2033635	53	2.1	53	92	0	182	35	22	14	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2036059--2036105	22	2.1	22	84	0	58	36	6	10	46	1.64
2040511--2040545	2	17.5	2	100	0	70	48	0	0	51	1.00
2040605--2040685	35	2.4	34	75	6	83	43	3	1	51	1.27
2042062--2042096	18	1.9	18	88	0	52	28	17	0	54	1.43
2043331--2043356	13	2.0	13	100	0	52	23	23	38	15	1.92
2043332--2043390	31	1.9	31	92	0	100	16	20	45	16	1.85
2043355--2043390	13	2.8	13	95	0	63	13	19	50	16	1.79
2043337--2043377	18	2.3	18	95	0	73	12	21	48	17	1.79
2043395--2043421	9	3.0	9	100	0	54	33	33	22	11	1.89
2045066--2045146	35	2.4	34	75	6	83	43	3	1	51	1.27
2046323--2046719	43	9.3	42	78	9	304	48	6	18	26	1.72
2046697--2046742	23	2.0	23	95	0	83	47	8	23	19	1.77
2046741--2046848	44	2.5	44	82	11	125	62	5	5	26	1.40
2046741--2046802	21	2.9	22	72	11	65	59	6	6	27	1.47
2046741--2046851	43	2.5	43	83	12	120	62	5	5	27	1.39
2046837--2046865	11	2.7	11	94	5	51	72	0	0	27	0.85
2046834--2046884	19	2.8	18	82	11	59	66	3	0	29	1.09
2047571--2047675	37	2.8	37	92	0	174	41	14	8	35	1.76
2048206--2048350	40	3.6	39	77	12	125	30	3	3	62	1.28
2048340--2048432	14	6.2	15	72	17	52	19	7	0	73	1.07
2048347--2048420	9	8.2	9	77	12	55	17	6	0	75	1.01
2048325--2048365	20	2.0	20	86	9	57	21	4	0	73	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2048291--2048422	17	7.3	17	68	18	63	22	5	0	71	1.11
2048443--2048514	27	2.7	27	70	19	71	19	8	1	70	1.20
2052519--2052731	103	2.1	103	93	0	363	26	13	23	36	1.92
2052751--2052807	23	2.5	23	76	0	60	24	22	22	29	1.99
2056040--2056088	22	2.2	22	82	7	64	32	30	28	8	1.86
2057559--2057769	103	2.0	103	95	0	377	27	14	22	36	1.92
2057785--2057845	23	2.7	23	92	0	104	19	24	27	27	1.99
2059907--2059972	18	3.6	18	78	13	71	78	4	13	3	1.02
2059914--2059998	30	2.8	30	75	7	91	77	3	15	3	1.04
2061515--2061845	36	9.1	36	77	13	286	26	19	12	41	1.88
2061653--2061845	37	5.1	36	83	8	206	25	19	13	41	1.88
2061698--2061845	78	1.9	79	90	1	235	23	19	13	43	1.87
2061898--2061982	35	2.4	36	94	2	145	42	16	9	31	1.80
2062573--2062683	37	3.0	37	86	3	163	38	13	12	35	1.83
2063169--2063229	23	2.8	21	74	16	54	21	6	4	67	1.33
2063183--2063228	24	2.0	23	83	12	58	19	6	4	69	1.28
2063228--2063364	42	3.3	38	76	17	123	27	2	3	65	1.23
2063245--2063376	40	3.2	39	78	15	124	28	2	3	65	1.19
2063268--2063358	36	2.7	34	79	17	84	28	2	2	67	1.15
2063355--2063422	9	7.9	9	79	12	56	17	4	0	77	0.92
2063246--2063425	42	4.5	40	73	18	117	23	3	2	70	1.16
2063314--2063437	20	5.8	21	73	18	73	22	4	0	72	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2063260--2063425	39	4.2	38	75	19	117	22	4	1	71	1.10
2063260--2063425	40	4.2	40	74	13	112	22	4	1	71	1.10
2063225--2063405	82	2.2	82	77	13	183	24	3	2	69	1.19
2063858--2063905	25	1.9	25	86	0	69	31	10	16	41	1.82
2065316--2065368	27	2.0	26	85	3	70	26	5	20	47	1.72
2071728--2071764	19	1.9	19	88	0	56	18	18	32	29	1.96
2076073--2076138	34	1.9	35	87	9	100	40	0	7	51	1.30
2078529--2078829	149	2.0	151	96	2	554	42	12	11	32	1.79
2085032--2085069	17	2.2	18	85	4	51	39	2	5	52	1.38
2102524--2102573	26	2.0	26	84	4	66	50	8	10	32	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21