Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008959.1 Hibiscus syriacus cultivar Beakdansim tig00112293_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4521124

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  21  of  21  ( 2431 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4436535--4436628
44
2.1
44
83
11
113
25
21
25
27
1.99
4442335--4442375
21
2.0
21
100
0
82
29
24
24
21
1.99
4442414--4442594
65
2.8
63
83
8
222
29
16
23
30
1.96
4442434--4442594
65
2.5
65
88
5
229
29
15
22
32
1.95
4442434--4442641
65
3.2
65
81
7
219
27
15
23
33
1.95
4452342--4452379
18
2.1
18
100
0
76
31
31
15
21
1.94
4453299--4453786
46
10.6
46
89
1
726
21
24
13
40
1.89
4470426--4470543
29
4.2
27
73
9
94
31
6
20
41
1.78
4470427--4470534
55
1.9
56
90
5
175
33
5
20
40
1.76
4470450--4470543
28
3.4
28
72
7
93
30
5
21
42
1.75
4476245--4476404
29
5.7
29
77
14
124
27
8
23
41
1.82
4476279--4476383
54
1.9
55
86
7
151
32
6
20
40
1.78
4476250--4476403
83
1.9
83
88
2
238
27
7
22
42
1.81
4476245--4476424
29
6.3
29
75
11
113
27
7
22
41
1.81
4479258--4479300
18
2.4
18
80
0
50
39
11
6
41
1.68
4479515--4479558
6
7.3
6
92
0
61
34
0
13
52
1.41
4493793--4493870
8
10.0
8
71
20
58
76
0
10
12
1.01
4493796--4493854
24
2.6
21
84
15
66
77
0
10
11
0.98
4493819--4493875
10
5.6
10
78
15
55
80
0
8
10
0.90
4494794--4495110
105
3.0
105
89
2
463
37
18
22
22
1.94
4499503--4499541
16
2.6
15
80
11
53
30
5
5
58
1.41
4500592--4500629
19
2.0
19
85
10
51
13
13
7
65
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4506372--4506400
5
5.8
5
100
0
58
79
0
20
0
0.74
4507376--4507421
2
23.0
2
100
0
92
50
0
0
50
1.00
4507595--4507647
26
2.0
27
85
10
74
39
5
3
50
1.44
4510541--4510669
42
3.1
42
88
0
213
27
11
20
39
1.88
4516149--4516238
37
2.4
37
84
0
117
37
20
13
28
1.90
4517079--4517109
2
15.5
2
100
0
62
51
0
0
48
1.00
4518510--4518545
18
2.0
18
88
0
54
30
16
0
52
1.44
4519856--4519940
18
4.7
18
91
0
125
14
18
48
18
1.81
4519841--4519888
23
2.0
24
88
8
71
14
22
43
18
1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21

The End!