genome.fa.s8959.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008959.1 Hibiscus syriacus cultivar Beakdansim tig00112293_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4521124

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  2  of  21  ( 2431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
178250--178459	72	2.9	72	87	4	291	45	17	22	14	1.84
178236--178453	53	4.1	52	88	10	311	46	17	22	13	1.83
178430--178545	53	2.2	52	81	3	133	20	21	18	39	1.92
178468--178555	19	4.8	19	81	14	114	14	21	14	48	1.80
178646--178682	14	2.6	14	91	0	65	45	21	0	32	1.52
180605--180777	19	9.6	19	76	12	150	46	23	19	9	1.80
180699--180755	14	3.7	14	75	20	51	45	22	22	8	1.80
180680--180772	33	2.8	33	95	0	168	47	21	21	9	1.79
180639--180777	52	2.7	52	73	8	138	46	23	21	8	1.78
180789--180847	14	3.9	14	72	20	55	6	15	28	49	1.70
180773--180866	33	2.8	33	86	0	152	8	17	25	48	1.74
180773--180882	19	6.3	18	70	20	74	10	16	26	47	1.78
180980--181295	93	3.4	93	99	0	623	45	18	13	22	1.85
182980--183044	21	3.1	21	80	4	87	47	13	26	12	1.78
183033--183085	14	3.4	14	72	22	52	43	22	26	7	1.80
182980--183102	33	3.5	33	87	8	156	46	17	24	11	1.81
183119--183175	14	3.7	14	75	20	60	8	24	22	43	1.81
183103--183182	33	2.4	33	95	0	142	8	21	22	47	1.78
183163--183236	21	3.5	21	80	7	96	14	20	17	47	1.83
183316--183386	33	2.2	33	94	0	124	47	16	23	11	1.79
183766--183958	20	9.6	20	85	5	246	18	19	27	34	1.95
188356--188388	15	2.2	15	100	0	66	33	21	15	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
195587--195638	26	2.0	27	88	3	79	34	25	13	26	1.93
205931--206074	67	2.2	67	96	1	272	33	20	13	32	1.91
206682--206730	23	2.3	20	79	10	53	46	6	14	32	1.69
219305--219347	19	2.2	19	83	4	50	41	4	18	34	1.71
220736--220806	33	2.1	34	84	5	92	56	1	0	42	1.08
222323--222356	17	2.1	16	88	5	50	76	0	8	14	1.01
232418--232451	17	2.1	16	88	5	50	76	0	8	14	1.01
237218--237285	23	3.1	21	74	17	66	22	1	4	72	1.11
242521--242561	20	2.0	20	100	0	82	34	19	21	24	1.97
249395--250101	91	7.9	91	88	3	1007	36	17	22	23	1.94
249772--249835	17	3.3	19	67	20	51	42	12	21	23	1.87
249953--250090	39	3.5	38	73	9	125	41	14	23	21	1.89
249954--250103	79	1.9	79	92	0	255	39	15	22	22	1.92
250033--250096	20	3.2	20	65	12	51	40	12	25	21	1.88
251549--251608	25	2.4	25	75	10	61	26	1	3	68	1.15
251575--251879	152	2.0	151	99	0	601	31	11	13	43	1.79
254875--254909	5	7.0	5	93	0	52	40	20	5	34	1.76
255985--256026	18	2.3	18	87	0	66	33	11	4	50	1.60
258441--258476	19	1.9	19	94	5	65	36	16	0	47	1.47
258733--258772	17	2.2	19	79	20	50	47	12	0	40	1.41
264597--264665	30	2.2	30	82	15	86	34	5	15	43	1.71
264606--264665	30	2.0	31	90	6	97	33	6	15	45	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
264745--264800	21	2.7	21	100	0	112	21	39	19	19	1.93
264864--265097	20	11.6	20	93	1	353	18	26	21	33	1.97
265453--265522	34	2.1	32	86	5	95	31	15	28	24	1.96
266441--266486	21	2.2	22	80	11	60	36	28	10	23	1.89
266447--266593	21	6.9	21	74	9	100	40	25	10	23	1.87
266442--266565	44	2.9	44	80	4	110	41	24	9	25	1.85
266498--266593	42	2.3	41	82	5	120	44	22	11	20	1.84
271713--271883	21	8.1	21	73	11	100	38	23	11	26	1.89
271713--271883	41	4.1	42	73	10	125	38	23	11	26	1.89
271723--271843	65	1.9	64	81	5	145	39	24	11	23	1.88
271794--271852	20	2.9	21	78	14	68	44	23	6	25	1.78
274008--274505	194	2.6	193	81	4	556	37	12	10	39	1.77
275491--275539	17	2.8	18	79	17	59	42	2	0	55	1.11
275469--275540	20	3.7	19	75	19	60	40	1	0	58	1.07
277447--277490	9	4.5	10	86	8	56	34	0	0	65	0.93
282285--282309	13	1.9	13	100	0	50	52	8	8	32	1.60
283187--283238	22	2.3	23	90	9	90	38	11	13	36	1.81
283181--283238	22	2.6	22	88	2	89	34	12	13	39	1.82
284335--284434	32	3.3	32	84	13	124	43	1	0	56	1.06
284336--284434	5	20.8	5	76	22	63	43	1	0	55	1.06
286749--286819	23	3.2	23	68	22	60	35	25	18	21	1.95
286755--286841	44	2.0	44	90	0	138	31	26	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
286761--286840	21	3.7	20	71	21	63	32	27	20	20	1.97
287249--287290	15	2.6	16	77	11	50	52	9	0	38	1.34
287559--287705	55	2.7	55	90	1	224	27	21	20	29	1.98
289023--289097	37	2.0	37	82	14	93	50	2	2	44	1.30
289872--289938	31	2.2	31	88	0	98	32	7	8	50	1.62
290100--290174	24	3.0	24	84	9	80	52	1	4	42	1.28
290112--290185	24	3.0	26	77	15	84	52	1	4	41	1.28
300916--300953	12	3.3	12	78	14	53	10	52	5	31	1.58
304366--304417	3	16.7	3	76	7	50	9	34	23	32	1.87
304369--304417	9	5.6	9	82	4	64	10	34	22	32	1.88
304361--304410	26	1.9	26	91	0	82	14	34	20	32	1.92
306274--306606	111	3.0	111	96	0	603	44	10	7	37	1.68
307325--307355	16	1.9	16	93	0	53	48	0	0	51	1.00
307413--307446	17	1.9	18	94	5	61	23	0	5	70	1.09
308255--308542	158	1.8	156	82	6	375	39	11	15	34	1.83
310048--310124	31	2.6	30	82	8	104	38	9	10	41	1.71
314287--314314	14	2.0	14	100	0	56	50	14	21	14	1.78
316539--316639	51	2.0	51	96	0	184	34	11	21	31	1.90
318401--318428	14	2.0	14	100	0	56	50	14	21	14	1.78
329791--329829	20	2.0	20	100	0	78	51	7	10	30	1.64
330397--330446	25	2.0	25	88	3	75	58	0	4	38	1.17
332263--332339	3	25.7	3	94	0	136	35	1	0	63	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
333729--333806	13	5.8	13	72	8	50	30	0	3	65	1.10
334454--334485	7	4.6	7	100	0	64	68	0	0	31	0.90
345182--345241	10	5.9	10	90	3	93	85	0	15	0	0.61
345185--345255	35	2.0	35	89	5	108	84	0	15	0	0.62
345184--345249	10	6.7	10	75	15	57	83	0	16	0	0.65
345195--345255	17	3.3	19	77	11	72	85	0	14	0	0.60
345195--345255	19	3.3	19	77	9	72	85	0	14	0	0.60
345185--345249	28	2.2	30	86	10	89	84	0	15	0	0.62
345572--345611	16	2.5	16	88	8	55	30	7	10	52	1.62
346412--346740	83	4.0	83	96	0	597	28	12	22	35	1.91
347537--348056	113	4.6	113	94	1	882	38	14	18	28	1.90
348390--348466	3	25.7	3	94	0	136	35	1	0	63	1.03
349853--349930	13	5.8	13	72	8	50	30	0	3	65	1.10
351500--351543	22	2.0	22	86	4	63	29	0	2	68	1.02
359393--359425	15	2.2	15	94	0	57	30	15	30	24	1.95
361714--361794	25	3.2	25	92	0	135	29	22	18	29	1.97
361900--361971	29	2.4	29	76	15	76	41	5	19	33	1.75
363338--363373	18	2.0	18	88	0	54	36	8	5	50	1.56
363715--363793	24	3.5	24	75	19	87	30	20	17	31	1.96
363713--363812	44	2.3	44	89	3	148	30	22	18	30	1.97
368157--368208	2	26.0	2	100	0	104	50	0	0	50	1.00
368714--368793	28	2.9	28	86	0	124	36	30	18	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
372523--372548	2	13.0	2	100	0	52	50	0	0	50	1.00
374530--374564	3	12.0	3	87	6	54	65	0	34	0	0.93
376700--376734	18	1.9	18	100	0	70	17	0	14	68	1.21
378996--379074	24	3.5	24	70	22	71	31	18	16	32	1.94
378996--379093	44	2.2	44	86	12	139	30	20	17	31	1.95
379272--379318	21	2.2	22	82	17	55	61	14	12	10	1.56
380042--380144	36	2.9	36	94	0	179	27	15	14	42	1.86
380708--380762	12	4.6	12	83	0	74	27	47	12	12	1.78
381623--381763	76	1.9	76	86	0	201	36	4	7	51	1.53
381770--381954	95	1.9	96	89	3	284	53	3	4	38	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21