genome.fa.s9463.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009463.1 Hibiscus syriacus cultivar Beakdansim tig00113726_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3931635

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  10  of  20  ( 2327 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1871785--1871848	29	2.2	30	91	2	103	37	14	10	37	1.81
1871820--1871967	59	2.5	61	89	6	230	43	15	11	29	1.82
1871940--1872008	28	2.5	26	77	13	75	46	15	11	26	1.80
1872141--1872349	94	2.2	94	94	0	364	36	12	18	32	1.88
1872330--1872501	72	2.5	69	83	6	213	37	10	19	32	1.86
1872330--1872639	72	4.5	68	71	17	212	38	11	18	31	1.86
1872331--1872473	36	4.1	35	82	6	166	39	9	19	32	1.83
1872331--1872502	36	4.9	36	81	8	133	37	10	19	32	1.86
1872542--1872677	35	3.7	36	76	12	118	34	15	16	33	1.91
1872989--1873035	4	11.8	4	90	0	76	25	2	23	48	1.62
1874223--1874270	11	4.1	11	80	15	51	4	14	2	79	0.98
1874848--1874886	20	2.0	20	89	0	60	38	15	15	30	1.88
1877971--1878056	28	2.9	28	75	6	73	59	12	16	11	1.61
1877957--1878060	30	3.6	29	70	10	79	59	11	15	13	1.61
1879408--1879456	3	16.0	3	87	12	73	67	2	0	30	1.02
1879400--1879456	28	2.0	28	86	6	80	64	1	0	33	1.04
1879397--1879456	19	2.9	21	87	7	79	65	3	0	31	1.09
1883069--1883116	20	2.4	20	80	13	62	33	20	10	35	1.87
1884850--1884925	14	5.7	13	68	21	50	46	1	3	48	1.29
1884886--1884935	26	1.9	26	87	0	73	50	0	2	48	1.12
1915145--1915211	35	2.0	34	82	5	82	40	10	8	40	1.71
1915711--1915743	13	2.4	14	90	5	50	18	3	3	75	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1915625--1915799	75	2.3	76	86	3	239	31	2	9	56	1.44
1921072--1921116	16	2.7	17	80	13	58	8	0	6	84	0.78
1924656--1924819	75	2.2	75	85	2	222	31	2	10	56	1.46
1925518--1925547	16	1.9	15	93	6	51	36	3	0	60	1.14
1927803--1927843	19	2.2	19	100	0	82	48	14	9	26	1.75
1928303--1928336	6	5.7	6	100	0	68	17	35	17	29	1.93
1935813--1935866	26	2.1	25	83	10	65	29	16	1	51	1.55
1942362--1942404	20	2.2	20	86	0	59	32	11	20	34	1.89
1950811--1950853	20	2.2	20	91	0	68	32	13	20	32	1.92
1954483--1954642	54	3.0	54	81	0	140	24	21	20	34	1.97
1955848--1955904	29	1.9	30	92	3	98	38	17	8	35	1.81
1961682--1961719	20	1.9	20	84	10	51	36	2	13	47	1.56
1968722--1968825	19	5.2	21	68	18	60	46	0	5	47	1.33
1968701--1968888	59	3.2	61	78	14	177	45	2	5	46	1.39
1968739--1968886	19	7.7	18	65	21	52	45	2	6	45	1.39
1968999--1969031	2	16.5	2	87	12	50	48	0	3	48	1.17
1968999--1969084	11	8.2	11	71	19	51	38	1	6	53	1.36
1969985--1970065	41	2.0	41	100	0	162	27	13	27	32	1.94
1977687--1977733	17	2.5	18	80	16	51	42	0	8	48	1.33
1977684--1977737	21	2.7	21	72	16	60	42	0	9	48	1.35
1977684--1977735	19	2.6	20	75	9	61	42	0	9	48	1.36
1977725--1977763	18	2.2	18	85	0	51	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1977654--1977780	67	1.9	65	82	9	159	43	0	7	48	1.35
1977804--1977896	49	1.9	48	82	6	116	40	3	8	47	1.50
1977814--1977950	49	2.7	50	80	11	136	44	1	6	47	1.38
1977923--1978054	15	8.9	15	68	19	57	40	0	8	51	1.32
1978019--1978096	3	26.3	3	87	7	70	24	0	8	66	1.20
1983038--1983074	18	2.1	18	89	0	56	16	27	29	27	1.97
1989534--1989605	35	2.1	35	94	0	126	26	38	2	31	1.71
1990225--1990266	16	2.7	15	77	22	50	14	16	0	69	1.20
1993666--1993741	35	2.2	35	90	0	116	27	38	1	32	1.65
1995362--1995403	19	2.2	19	86	0	57	23	21	23	30	1.99
1995416--1995459	12	3.7	12	79	11	54	18	40	20	20	1.91
1995412--1995449	12	3.0	13	88	7	60	18	44	21	15	1.86
1995412--1995459	24	2.0	25	87	4	71	18	41	20	18	1.90
1995470--1995515	17	2.7	17	89	0	65	41	6	6	45	1.56
1997852--1997882	15	2.1	15	93	0	53	16	19	0	64	1.29
2000378--2000407	13	2.2	14	94	5	53	40	0	13	46	1.43
2002685--2002764	20	3.9	20	76	13	65	16	26	32	25	1.96
2011249--2011289	3	14.0	3	94	5	75	65	0	0	34	0.93
2011253--2011287	17	2.1	17	100	0	70	65	0	0	34	0.93
2011250--2011289	20	2.0	20	100	0	80	65	0	0	35	0.93
2011931--2012026	20	4.8	19	70	7	66	19	18	19	41	1.90
2012018--2012081	19	3.0	22	66	13	62	20	18	21	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2012167--2012211	5	8.6	5	97	2	72	24	55	20	0	1.43
2012697--2012728	6	5.5	6	96	3	57	0	15	53	31	1.43
2012840--2012892	22	2.4	22	93	0	97	37	28	16	16	1.91
2012884--2013001	20	5.8	20	68	4	83	36	22	22	18	1.95
2012881--2012997	41	2.9	41	88	0	180	35	23	21	18	1.95
2013442--2013475	17	1.9	18	88	5	52	29	2	2	64	1.22
2015074--2015099	2	13.0	2	100	0	52	50	0	0	50	1.00
2015874--2015932	16	3.9	15	70	17	50	47	1	10	40	1.47
2015996--2016048	17	3.5	15	78	14	56	45	1	0	52	1.11
2016008--2016045	17	2.2	17	90	0	58	50	0	0	50	1.00
2018218--2018260	13	3.2	13	96	3	77	37	9	9	44	1.69
2018261--2018290	10	3.0	10	100	0	60	40	10	10	40	1.72
2019662--2019990	85	3.8	86	82	9	406	30	19	10	39	1.86
2019621--2019990	130	2.9	131	82	8	438	30	19	11	39	1.86
2020389--2020427	21	1.9	21	84	5	53	30	30	12	25	1.93
2026456--2026776	45	7.1	45	91	2	493	31	18	8	41	1.81
2026428--2026813	45	8.6	45	87	3	483	30	19	9	40	1.83
2027436--2027487	20	2.5	21	81	3	61	26	23	17	32	1.96
2029311--2030126	408	2.0	408	98	1	1584	35	13	23	27	1.93
2031996--2032086	27	3.1	27	63	22	67	40	16	9	32	1.81
2031991--2032110	60	2.0	60	100	0	240	40	16	10	33	1.82
2031991--2032081	30	3.0	31	65	28	86	40	15	10	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2032012--2032107	27	3.3	27	69	25	88	39	17	8	34	1.80
2032831--2032856	11	2.4	11	100	0	52	19	7	0	73	1.07
2032999--2033065	32	2.1	33	97	2	127	19	23	2	53	1.59
2036155--2036223	31	2.2	31	89	5	104	26	15	13	44	1.83
2036388--2036463	30	2.5	31	89	4	120	21	11	15	51	1.75
2042337--2042445	24	4.4	24	74	11	78	15	20	24	39	1.91
2042337--2042450	50	2.3	51	86	6	171	14	21	25	38	1.92
2042359--2042448	26	3.5	26	77	11	114	14	21	26	37	1.92
2050591--2050629	15	2.6	14	81	14	51	69	0	0	30	0.89
2050947--2050986	20	2.0	20	100	0	80	40	20	10	30	1.85
2051556--2051672	49	2.3	51	72	10	125	41	8	11	38	1.73
2053619--2053808	76	2.6	72	86	6	244	30	1	12	56	1.43
2053754--2053781	12	2.3	12	100	0	56	39	0	7	53	1.28
2054474--2054537	7	9.0	7	74	16	51	20	4	0	75	0.99
2054487--2054555	21	3.3	20	82	9	77	18	5	0	75	1.00
2064393--2064437	21	2.0	23	91	8	76	44	6	22	26	1.77
2064967--2064998	3	11.0	3	93	6	57	31	0	0	68	0.90
2064990--2065025	19	1.9	18	88	5	54	36	2	8	52	1.46
2065844--2065879	17	2.1	17	89	0	54	27	5	0	66	1.13
2071514--2071563	12	3.8	12	82	15	55	16	2	4	78	1.00
2071514--2071563	26	2.0	25	84	4	64	16	2	4	78	1.00
2077951--2078004	28	2.0	28	92	3	92	53	3	0	42	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2078595--2078748	41	3.7	42	73	8	138	29	16	20	32	1.95
2079406--2079459	22	2.4	23	90	3	83	44	7	16	31	1.75
2080160--2080193	17	2.1	16	88	5	50	76	0	8	14	1.01
2090401--2090434	17	2.1	16	88	5	50	76	0	8	14	1.01
2094257--2094299	20	2.2	20	100	0	86	30	13	27	27	1.95
2094755--2094868	55	2.1	55	100	0	228	21	17	10	50	1.76
2098297--2098461	85	1.9	86	82	3	208	32	21	16	29	1.95
2098452--2098481	13	2.3	13	94	0	51	30	20	6	43	1.77
2104723--2104778	15	3.7	15	82	2	67	10	19	7	62	1.50
2106209--2106278	24	2.9	25	77	12	83	44	24	0	31	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20