genome.fa.s9463.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009463.1 Hibiscus syriacus cultivar Beakdansim tig00113726_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3931635

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  7  of  20  ( 2327 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1346014--1346056	13	3.5	13	78	12	54	53	2	0	44	1.13
1346015--1346083	9	7.9	8	73	19	50	52	4	1	42	1.30
1346015--1346060	24	2.0	23	91	4	74	54	2	0	43	1.12
1346099--1346323	11	21.9	11	68	20	96	48	7	3	41	1.46
1346078--1346323	92	2.7	93	72	14	224	47	6	4	41	1.49
1346130--1346300	59	2.9	59	81	8	161	48	4	3	43	1.41
1346101--1346274	50	3.7	49	76	15	118	48	6	2	41	1.43
1346284--1346322	20	2.0	20	89	0	60	51	12	2	33	1.54
1350805--1350843	17	2.2	18	90	4	62	48	5	0	46	1.24
1350858--1350923	2	34.5	2	72	14	50	43	1	1	53	1.19
1350858--1350914	14	4.5	13	77	16	57	42	0	1	56	1.10
1350897--1351120	21	10.5	21	67	21	76	47	5	5	41	1.50
1350865--1351121	12	20.0	13	65	22	55	46	4	5	43	1.47
1350835--1350922	45	2.0	45	82	8	108	40	1	3	54	1.24
1350835--1350923	47	1.9	45	84	4	115	41	1	3	53	1.24
1351026--1351150	29	3.9	32	70	21	93	49	4	4	40	1.45
1351024--1351072	2	25.0	2	76	19	50	46	2	4	46	1.33
1351025--1351120	8	13.7	7	68	23	60	51	4	4	40	1.41
1351025--1351124	27	3.9	26	71	19	84	51	4	5	40	1.43
1351037--1351121	21	4.0	22	79	11	88	52	3	4	38	1.39
1352317--1352400	14	6.2	13	73	17	64	9	0	10	79	0.93
1352324--1352405	19	4.4	19	70	14	55	9	1	9	79	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1352317--1352419	6	16.8	6	74	13	77	7	2	10	78	1.05
1352314--1352418	43	2.4	43	81	10	126	7	3	10	78	1.08
1353011--1353040	11	2.7	11	94	0	51	3	10	0	86	0.67
1353532--1353699	82	2.0	82	86	2	230	25	5	17	51	1.66
1353632--1353713	32	2.7	31	81	7	96	29	4	21	43	1.73
1353741--1353847	7	14.9	7	73	16	76	14	0	5	78	0.98
1353741--1353879	18	8.2	17	74	15	69	14	0	7	77	1.01
1353742--1353839	47	2.1	46	83	9	119	15	1	6	77	1.01
1353744--1353862	4	28.8	4	70	18	66	16	0	5	76	1.03
1353810--1353865	25	2.5	21	71	20	58	16	0	7	76	0.99
1356315--1356390	22	3.5	22	87	3	82	26	13	26	34	1.93
1356335--1356394	22	2.7	22	92	0	93	26	11	25	36	1.90
1357275--1357309	16	2.2	16	89	0	52	37	11	20	31	1.88
1359772--1359837	33	2.0	33	96	0	123	30	19	15	34	1.93
1364403--1364637	2	125.5	2	68	21	100	54	4	2	37	1.35
1364401--1364655	29	9.2	28	70	18	139	55	5	2	36	1.35
1364393--1364637	82	3.0	83	75	16	233	55	4	2	37	1.35
1364472--1364755	68	4.2	68	72	17	150	54	7	2	35	1.39
1364591--1364672	17	4.8	17	74	18	62	62	7	0	30	1.22
1364588--1364665	39	2.0	39	83	14	99	60	7	0	32	1.25
1364652--1364711	19	3.1	19	68	20	52	53	10	1	35	1.44
1364431--1364754	18	18.2	18	69	20	118	55	6	1	36	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1364700--1364746	16	2.9	16	79	20	53	59	2	2	36	1.21
1364402--1364754	7	50.3	7	67	23	124	55	5	2	36	1.37
1365351--1365457	32	3.2	32	71	12	99	21	16	26	35	1.95
1365340--1365446	35	3.1	34	72	12	103	22	14	28	34	1.94
1365335--1365512	67	2.6	68	85	6	241	23	15	25	35	1.94
1373727--1373996	55	4.9	55	87	5	366	31	17	18	32	1.94
1373727--1373996	110	2.5	110	90	0	414	31	17	18	32	1.94
1374456--1374508	21	2.5	21	100	0	106	28	18	18	33	1.95
1394530--1394628	50	2.0	50	95	0	180	26	13	17	43	1.85
1395045--1395089	24	1.9	23	86	4	63	28	4	6	60	1.42
1395398--1395468	21	3.4	21	77	9	74	23	25	18	32	1.97
1395458--1395509	21	2.5	21	81	3	61	38	19	25	17	1.93
1395495--1395572	41	1.9	41	91	0	129	37	21	17	23	1.94
1395498--1395612	20	5.7	20	74	9	81	34	22	18	24	1.96
1395779--1395822	22	2.0	22	100	0	88	22	45	13	18	1.84
1396085--1396143	20	3.0	20	84	0	64	15	16	22	45	1.84
1396280--1396334	25	2.2	24	78	15	58	20	9	18	52	1.71
1397462--1397509	18	2.7	18	93	0	87	27	45	12	14	1.81
1398012--1398078	20	3.4	20	81	2	73	38	23	22	14	1.92
1398012--1398114	19	5.6	19	75	14	72	41	23	21	13	1.88
1398126--1398184	14	3.9	14	72	20	55	11	16	22	49	1.78
1398128--1398203	33	2.3	33	95	0	134	13	15	19	51	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1398142--1398219	19	4.4	19	75	15	85	14	17	19	48	1.81
1398204--1398258	20	2.8	19	81	8	65	18	25	21	34	1.96
1398246--1398284	20	2.0	20	94	0	69	25	12	28	33	1.93
1398627--1398687	21	2.9	21	78	7	79	22	40	11	24	1.87
1398624--1398713	42	2.2	41	82	4	110	23	38	14	23	1.91
1400122--1400160	14	2.8	14	84	0	51	35	0	17	46	1.49
1400300--1400342	19	2.3	19	87	0	68	51	16	16	16	1.77
1400383--1400478	20	4.8	20	94	0	156	14	22	21	40	1.90
1401016--1401130	20	5.7	20	81	6	115	23	19	25	32	1.97
1400996--1401133	41	3.4	41	78	6	163	22	18	23	34	1.96
1400996--1401151	41	3.8	41	74	3	136	23	19	23	33	1.97
1401119--1401170	20	2.5	21	87	3	70	21	23	17	38	1.93
1404768--1404809	17	2.5	17	88	0	66	57	9	26	7	1.56
1405161--1405196	13	2.8	13	91	0	63	0	22	5	72	1.05
1405720--1405761	17	2.7	15	76	23	50	40	2	2	54	1.26
1407279--1407569	145	2.0	145	100	0	582	45	10	5	38	1.63
1409578--1409771	75	2.6	75	81	4	230	52	14	5	27	1.63
1409874--1409914	16	2.6	16	88	3	57	36	7	21	34	1.82
1409966--1410029	23	2.8	23	97	0	119	23	21	21	32	1.98
1410441--1410507	2	34.5	2	88	5	102	47	1	1	49	1.19
1412348--1412393	20	2.3	20	85	7	58	41	0	8	50	1.33
1414416--1414465	18	2.8	18	93	0	82	14	24	26	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1416287--1416397	39	2.8	39	86	0	114	23	23	16	36	1.94
1417251--1417289	19	2.0	20	90	5	62	38	5	2	53	1.37
1429463--1429499	14	2.8	14	92	8	60	21	0	29	48	1.50
1430820--1430844	12	2.1	12	100	0	50	28	16	32	24	1.96
1432148--1432546	198	2.0	198	94	4	696	36	14	16	32	1.89
1434984--1435026	21	2.0	21	100	0	86	32	4	13	48	1.63
1435433--1435485	20	2.6	21	90	6	90	26	39	22	11	1.88
1437623--1437681	30	2.0	30	89	0	91	42	22	6	28	1.79
1437619--1437684	15	4.4	15	80	0	78	43	22	6	27	1.76
1438105--1438202	45	2.2	45	96	0	178	29	15	12	42	1.83
1440505--1440547	5	8.0	5	85	14	59	18	55	20	4	1.60
1440514--1440553	18	2.2	18	100	0	80	17	50	22	10	1.76
1443028--1443106	24	3.3	24	85	3	124	26	16	20	36	1.93
1443028--1443118	47	1.9	48	95	2	166	28	16	18	36	1.93
1443028--1443118	24	3.8	24	83	2	121	28	16	18	36	1.93
1443196--1443270	35	2.1	35	97	0	141	9	29	28	33	1.88
1448070--1448107	20	1.9	20	88	0	58	10	26	36	26	1.89
1448089--1448150	20	2.9	21	83	7	72	16	25	33	24	1.95
1451935--1451974	21	1.9	21	85	10	55	35	10	2	52	1.48
1458081--1458151	23	3.0	24	70	2	63	32	22	19	25	1.98
1462252--1462301	2	25.5	2	80	11	59	48	2	0	50	1.12
1462717--1462755	20	2.0	19	85	5	51	64	5	2	28	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1467720--1467904	43	4.3	43	91	0	289	27	21	22	28	1.99
1467744--1467930	86	2.2	86	83	2	225	26	20	22	31	1.98
1468096--1468159	21	3.0	21	83	0	74	56	20	4	18	1.59
1472343--1472403	25	2.4	25	94	0	104	42	6	40	9	1.64
1472521--1472716	84	2.4	82	80	5	216	28	17	20	32	1.96
1472596--1472796	41	4.9	41	76	7	174	31	18	17	31	1.94
1473431--1473466	17	2.1	18	89	5	56	44	0	0	55	0.99
1473441--1473492	25	2.0	27	88	7	81	38	0	1	59	1.08
1473436--1473494	25	2.4	24	80	8	73	37	0	1	61	1.07
1473751--1473812	2	31.0	2	96	0	115	50	0	1	48	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20