genome.fa.s9463.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009463.1 Hibiscus syriacus cultivar Beakdansim tig00113726_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3931635

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  2  of  20  ( 2327 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
216136--216254	50	2.3	51	83	12	156	26	21	15	36	1.94
220279--220323	2	23.0	2	95	4	83	48	0	0	51	1.00
221019--221051	16	1.9	17	88	11	50	42	3	0	54	1.15
221776--221828	21	2.5	21	81	6	72	20	26	18	33	1.96
221818--221869	21	2.5	21	87	3	70	38	17	23	21	1.93
221803--221910	41	2.6	42	72	7	96	31	21	18	28	1.97
222411--222477	19	3.5	19	83	2	80	49	25	14	10	1.76
222478--222641	33	4.9	33	82	10	181	12	21	22	43	1.86
222473--222666	19	11.1	19	70	18	127	12	22	21	43	1.86
222473--222607	71	1.9	70	92	1	225	11	21	22	44	1.84
222548--222641	31	3.0	31	87	3	125	12	22	23	41	1.88
224764--224828	20	3.2	20	73	2	67	26	35	20	18	1.95
224712--224790	41	1.9	42	84	2	106	21	37	17	22	1.94
226154--226189	14	2.6	14	95	0	63	30	0	25	44	1.54
226294--226340	19	2.5	19	96	0	85	44	21	21	12	1.85
226365--226514	19	8.7	19	66	20	80	14	23	20	41	1.89
226369--226494	33	3.9	32	87	10	193	14	23	19	42	1.88
226362--226493	65	2.0	66	97	1	248	15	23	19	40	1.90
228788--228812	12	2.1	12	100	0	50	0	28	0	72	0.86
228985--229038	24	2.2	24	90	0	81	40	20	16	22	1.91
229830--229908	20	3.9	20	75	9	61	35	21	18	24	1.96
229868--229918	20	2.5	20	77	0	66	37	19	17	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
230127--230218	20	4.6	20	74	5	87	42	20	21	15	1.89
230268--230312	19	2.4	19	96	0	81	15	17	15	51	1.77
232357--232406	20	2.5	20	76	0	55	42	24	20	14	1.88
232393--232456	19	3.7	17	72	21	53	42	25	18	14	1.88
232470--232526	14	3.7	14	72	20	51	12	15	21	50	1.76
232451--232542	33	2.8	33	94	0	157	14	18	19	47	1.82
232446--232542	19	5.6	19	68	22	79	14	19	19	46	1.84
232527--232564	20	1.9	19	85	15	51	21	26	21	31	1.98
233057--233101	18	2.5	18	88	0	72	13	15	44	26	1.83
234420--234461	20	2.1	20	86	0	57	50	21	16	11	1.77
234429--234477	20	2.5	20	89	0	71	36	26	18	18	1.94
234951--235085	20	6.7	19	80	9	108	24	17	24	34	1.96
234951--235088	61	2.3	61	84	0	186	23	16	23	35	1.95
234951--235106	61	2.6	61	81	2	152	23	18	23	34	1.96
235435--235481	2	24.0	2	91	4	78	46	0	0	53	1.00
235831--235963	38	3.5	37	71	10	108	35	18	11	35	1.86
235786--235984	74	2.7	73	79	6	222	33	20	11	35	1.88
237697--237743	24	2.0	24	87	8	69	25	14	0	59	1.36
237697--237743	25	2.0	23	84	16	60	25	14	0	59	1.36
237747--237782	8	4.4	8	96	3	63	22	0	0	77	0.76
237747--237831	9	9.2	9	77	15	61	24	3	1	70	1.10
237748--237835	41	2.2	40	84	10	108	26	3	1	69	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
237822--237881	23	2.6	22	79	7	66	23	10	6	60	1.52
242218--242280	29	2.1	29	85	8	83	76	4	6	12	1.14
242295--242341	21	2.2	21	77	7	51	65	6	4	23	1.33
242364--242397	16	2.3	14	90	10	50	70	2	17	8	1.25
243852--244203	164	2.1	163	82	5	413	24	18	23	33	1.97
243949--244268	84	3.9	82	74	4	284	25	18	25	31	1.97
244377--244811	110	4.0	110	89	3	639	23	18	23	34	1.97
245244--245320	32	2.4	32	86	0	100	32	24	14	28	1.94
246398--246468	14	5.3	12	75	20	61	1	11	5	81	0.91
246410--246479	9	7.1	9	78	13	59	1	11	5	81	0.92
246901--246935	17	2.1	17	100	0	70	34	28	11	25	1.91
250994--251056	21	2.9	21	83	4	72	15	25	38	20	1.92
256358--256387	11	2.7	11	94	0	51	46	0	3	50	1.18
258457--258484	3	9.3	3	100	0	56	67	0	0	32	0.91
258499--258554	5	10.8	5	77	7	58	78	0	7	14	0.95
258459--258549	32	2.7	33	81	13	96	73	1	7	17	1.12
263326--263353	2	14.0	2	100	0	56	50	0	0	50	1.00
270924--270957	16	2.1	16	88	5	50	52	0	32	14	1.42
274796--274836	18	2.3	18	91	0	64	12	19	43	24	1.85
284556--284609	2	27.5	2	96	3	101	50	0	0	50	1.00
285149--285235	42	2.1	42	100	0	174	56	5	6	31	1.49
285163--285230	21	3.2	21	72	15	77	55	4	8	30	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
286757--286794	17	2.2	17	90	0	58	63	7	5	23	1.42
288488--288517	14	2.1	15	93	6	53	60	0	6	33	1.23
288666--288714	2	24.5	2	91	0	80	46	0	4	48	1.20
288890--288927	7	5.4	7	100	0	76	71	0	28	0	0.87
291374--291491	39	3.0	39	87	0	182	33	23	16	26	1.95
294499--294743	129	1.9	129	84	5	334	35	15	18	30	1.92
301830--301877	18	2.7	18	77	6	53	20	20	35	22	1.96
302959--303007	19	2.5	19	81	15	55	26	24	2	46	1.63
306547--306592	24	1.9	24	95	0	83	34	26	23	15	1.94
306604--306685	23	3.6	23	79	0	74	35	21	24	18	1.96
313489--313536	24	2.0	23	88	4	69	35	25	22	16	1.95
313504--313625	23	5.3	22	74	12	86	39	24	19	16	1.92
313714--313754	16	2.5	17	88	7	59	46	19	9	24	1.80
315785--315849	23	2.8	23	68	9	60	38	24	16	20	1.93
316879--316906	2	14.0	2	100	0	56	50	0	0	50	1.00
322804--322858	20	2.5	22	77	22	62	23	23	21	30	1.99
322946--322993	21	2.3	21	100	0	96	35	20	18	25	1.95
328050--328085	17	2.1	17	89	0	54	22	0	25	52	1.47
328100--328149	13	3.8	13	80	17	59	38	2	2	58	1.21
328098--328152	14	4.1	14	77	13	62	41	1	1	54	1.21
329495--329543	6	8.2	6	100	0	98	16	0	34	48	1.46
330796--330843	23	2.1	23	88	0	69	37	8	16	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331604--332174	111	5.1	112	89	1	831	26	14	13	46	1.80
338785--338995	88	2.4	88	81	5	264	39	11	17	31	1.85
340453--340481	2	14.5	2	100	0	58	48	0	0	51	1.00
346699--347024	164	2.0	166	98	1	638	35	17	16	30	1.92
352674--352742	23	3.1	23	77	10	63	53	1	0	44	1.09
352673--352721	16	3.2	14	85	11	53	53	0	0	46	1.00
354250--354336	31	2.8	32	83	8	92	37	25	13	22	1.91
357009--357085	25	3.2	25	82	16	108	10	24	46	18	1.80
357030--357070	12	3.7	12	75	18	52	9	24	46	19	1.80
357030--357076	21	2.5	17	76	23	58	10	23	46	19	1.80
357078--357150	19	3.8	20	85	8	91	24	30	30	15	1.95
357081--357150	10	7.3	9	78	10	68	25	28	30	15	1.96
357113--357161	20	2.4	20	86	10	64	30	26	28	14	1.95
364334--364371	17	2.2	17	100	0	76	10	23	47	18	1.79
364383--364428	20	2.3	20	82	14	60	26	28	28	17	1.98
366114--366225	57	1.9	57	82	5	136	58	0	3	36	1.21
367622--367720	3	33.3	3	78	9	78	56	0	1	42	1.06
367937--368263	122	2.7	122	94	0	566	25	19	14	40	1.89
368173--368502	113	2.9	112	86	1	430	26	18	15	38	1.91
370050--370129	10	7.5	11	72	16	53	8	12	0	78	0.95
370089--370122	16	2.3	14	90	10	50	0	17	0	82	0.67
370048--370131	20	4.1	20	75	17	75	8	11	0	79	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
370048--370134	15	5.7	16	75	15	60	8	12	0	79	0.93
380743--380797	28	2.0	28	85	7	76	60	0	5	34	1.20
382898--382977	3	26.0	3	85	7	83	61	0	0	38	0.96
385406--385438	17	1.9	17	93	0	57	15	39	0	45	1.46
390860--390920	23	2.7	23	87	5	88	26	27	26	19	1.99
397890--397925	19	2.0	19	89	10	58	13	36	0	50	1.43
398694--398759	3	21.7	3	85	14	91	65	0	1	33	1.02
398694--398759	23	3.1	22	89	10	102	65	0	1	33	1.02
398961--399415	134	3.4	134	83	3	585	27	16	30	25	1.97
399461--399518	29	2.0	29	89	0	89	44	13	18	22	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20