genome.fa.s9463.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009463.1 Hibiscus syriacus cultivar Beakdansim tig00113726_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3931635

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  20  of  20  ( 2327 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3844213--3844514	147	2.0	148	96	1	552	35	20	15	28	1.93
3845592--3845622	16	1.9	16	93	0	53	51	16	0	32	1.44
3845973--3846017	21	2.1	21	87	0	63	15	24	28	31	1.96
3850800--3851440	89	7.2	89	84	3	765	29	19	20	30	1.97
3850800--3851440	267	2.4	267	88	1	935	29	19	20	30	1.97
3854154--3854234	34	2.4	34	85	0	99	32	16	20	30	1.95
3854680--3854718	20	1.9	21	89	5	62	41	15	28	15	1.87
3854670--3854798	47	2.7	47	93	0	222	43	12	24	20	1.86
3855782--3855814	13	2.5	13	95	0	57	33	3	0	63	1.10
3855782--3855828	13	3.8	12	81	16	51	36	2	4	57	1.30
3856284--3856354	3	23.7	3	100	0	142	32	0	0	67	0.91
3860514--3860551	20	1.9	20	88	0	58	50	0	0	50	1.00
3861592--3861617	6	4.3	6	100	0	52	50	15	0	34	1.45
3863217--3863256	21	1.9	21	84	0	53	37	0	5	57	1.21
3869164--3869221	29	1.9	31	86	6	84	55	1	8	34	1.41
3873658--3873714	21	2.7	23	76	15	68	36	15	15	31	1.90
3873751--3873984	77	3.0	77	98	0	450	37	12	19	30	1.89
3874241--3874270	3	9.7	3	92	7	51	36	0	0	63	0.95
3881193--3881241	20	2.4	21	75	6	55	34	22	6	36	1.79
3881534--3881579	20	2.3	19	82	10	56	28	2	6	63	1.31
3881545--3881582	20	1.9	20	94	0	67	28	0	7	63	1.23
3882471--3882516	23	2.0	23	82	4	56	60	10	8	19	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3884159--3884201	17	2.6	17	77	3	52	62	0	2	34	1.08
3885050--3885091	2	21.0	2	100	0	84	50	0	0	50	1.00
3886035--3886140	46	2.3	46	90	6	162	27	20	20	31	1.98
3891421--3891542	21	5.6	21	69	10	68	31	24	19	24	1.98
3894100--3894256	65	2.4	64	83	6	183	29	19	17	33	1.95
3896256--3896345	29	3.1	29	88	3	119	25	25	2	46	1.64
3896777--3896988	34	5.6	34	68	23	129	29	22	11	37	1.89
3896640--3897033	79	5.0	79	90	3	571	28	23	12	36	1.90
3896969--3897063	45	2.1	45	94	0	163	31	26	10	31	1.90
3897509--3897562	22	2.6	20	75	11	63	27	29	12	29	1.94
3898832--3898863	15	2.1	15	94	0	55	46	6	9	37	1.61
3900756--3900801	20	2.3	20	92	0	74	26	19	30	23	1.98
3907020--3907086	31	2.2	31	89	5	100	37	13	28	20	1.91
3907396--3907468	3	23.7	3	86	5	74	42	0	0	57	0.98
3912915--3912946	15	2.1	15	94	0	55	25	18	9	46	1.79
3920272--3920314	6	7.2	6	80	19	54	83	0	16	0	0.64
3920274--3920315	15	2.9	14	86	10	57	85	0	14	0	0.59
3920269--3920316	23	2.1	23	92	3	80	81	0	18	0	0.70
3921582--3921793	83	2.6	83	100	0	424	25	11	25	38	1.89
3921665--3922042	207	1.9	201	89	6	586	31	12	20	34	1.91
3922757--3923623	113	7.7	113	92	1	1307	37	15	18	29	1.91
3923452--3923497	24	2.0	23	83	12	58	52	6	23	17	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3923855--3923936	3	26.7	3	82	4	92	39	0	0	60	0.96
3927611--3927679	31	2.3	31	92	5	115	26	28	11	33	1.91
3928561--3928618	28	2.0	29	86	3	82	27	15	22	34	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20

The End!