genome.fa.s9463.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009463.1 Hibiscus syriacus cultivar Beakdansim tig00113726_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3931635

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  19  of  20  ( 2327 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3616911--3617035	31	3.9	31	86	8	180	34	9	18	37	1.83
3616911--3617035	65	2.0	62	87	7	180	34	9	18	37	1.83
3617114--3617205	34	2.6	34	83	8	105	42	18	20	18	1.90
3617043--3617352	65	4.7	65	73	11	231	40	13	18	27	1.88
3617306--3617392	37	2.4	37	88	0	120	39	16	19	25	1.92
3617232--3617456	103	2.2	103	89	4	348	37	12	18	31	1.88
3617419--3617477	21	2.9	21	89	2	84	35	10	27	27	1.89
3617600--3617702	52	2.0	52	96	0	188	37	15	16	30	1.90
3618875--3619228	183	1.9	183	94	0	618	29	20	21	27	1.98
3622777--3622853	40	1.9	40	84	10	104	67	2	11	18	1.33
3622938--3622970	2	16.5	2	87	12	50	51	0	3	45	1.16
3622930--3622971	10	4.6	9	82	14	50	54	0	2	42	1.13
3622937--3622985	12	4.2	12	82	15	50	53	0	6	40	1.26
3622992--3623043	24	2.1	25	86	10	72	75	3	1	19	1.06
3623095--3623138	20	2.2	20	88	8	63	84	0	4	11	0.77
3623091--3623163	27	2.6	26	81	16	76	78	0	6	15	0.96
3626583--3626644	31	2.0	32	90	3	99	69	0	19	11	1.18
3634634--3634677	21	2.1	21	100	0	88	22	31	25	20	1.98
3635442--3635786	31	11.6	31	84	9	393	40	23	16	19	1.91
3635445--3635787	118	2.9	118	85	6	427	40	23	16	19	1.91
3639649--3639693	21	2.1	21	88	8	65	26	26	22	24	2.00
3640434--3640792	31	11.6	31	90	1	515	42	21	16	20	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3642796--3642827	16	2.0	16	93	0	55	25	21	12	40	1.88
3644153--3644446	31	9.6	31	90	2	454	40	22	17	19	1.91
3651809--3651930	24	5.1	24	87	4	156	22	14	21	41	1.89
3651824--3651862	12	3.2	12	79	13	53	28	12	23	35	1.91
3653939--3654258	98	3.2	97	73	13	258	40	10	12	35	1.78
3653952--3654781	201	4.2	201	78	7	563	37	14	12	35	1.84
3653933--3654781	101	8.5	99	70	8	463	37	14	12	34	1.84
3658793--3658977	102	1.8	103	86	1	273	41	14	11	32	1.81
3658806--3659606	100	8.1	99	74	9	487	40	12	12	34	1.80
3659344--3659606	101	2.6	101	80	7	284	40	13	11	34	1.80
3659644--3659693	21	2.4	21	82	0	64	46	12	12	30	1.77
3667293--3667353	32	1.9	32	82	0	77	27	19	16	36	1.93
3669375--3669657	149	1.9	148	86	0	404	31	12	14	41	1.83
3673044--3673072	12	2.4	12	100	0	58	20	0	17	62	1.33
3673482--3673676	45	4.3	44	81	9	198	36	7	15	39	1.77
3673468--3673676	90	2.3	89	82	5	251	35	7	15	40	1.76
3673825--3674234	58	7.1	57	77	10	347	39	6	12	41	1.68
3673864--3674072	114	1.8	116	85	6	300	38	7	14	40	1.73
3674341--3674424	39	2.2	39	82	8	100	35	2	14	47	1.57
3674400--3674472	24	3.0	24	86	7	110	30	5	6	57	1.47
3674400--3674472	26	2.9	26	89	4	114	30	5	6	57	1.47
3674448--3674721	39	6.9	39	77	10	209	38	6	10	44	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3674606--3674692	44	2.0	44	88	0	129	34	9	6	49	1.61
3686243--3686285	21	2.0	21	86	0	59	30	27	25	16	1.97
3686265--3686415	67	2.2	68	88	2	216	28	27	26	17	1.97
3686720--3686789	29	2.4	29	90	0	104	37	10	14	38	1.79
3686805--3686864	30	2.0	31	90	3	95	36	6	23	33	1.81
3687084--3687150	22	3.0	22	100	0	134	19	26	26	26	1.99
3697315--3697361	20	2.3	20	88	0	67	61	14	2	21	1.43
3700948--3701006	18	3.3	18	90	0	73	28	15	25	30	1.96
3717514--3717669	56	2.8	56	84	2	170	32	17	12	37	1.88
3720099--3720518	226	1.9	226	98	0	813	28	18	15	37	1.92
3722743--3722781	20	2.0	20	85	10	53	48	7	7	35	1.61
3726570--3726676	31	3.3	31	70	14	108	18	20	24	36	1.95
3726587--3726695	31	3.4	31	71	14	103	20	22	21	35	1.96
3732292--3732324	12	2.8	12	100	0	66	6	30	0	63	1.18
3732304--3733129	222	3.8	220	95	2	1486	30	24	9	35	1.88
3736307--3736374	33	2.0	36	82	8	88	42	1	0	55	1.08
3736375--3736417	22	2.0	22	100	0	86	44	9	0	46	1.35
3736410--3736447	19	2.0	19	100	0	76	36	5	10	47	1.61
3736412--3736454	19	2.4	17	92	4	59	41	2	9	46	1.48
3736412--3736469	18	3.2	18	87	2	71	43	3	10	43	1.55
3736576--3736646	22	2.9	25	85	10	85	46	0	2	50	1.16
3737827--3737872	20	2.4	19	81	3	56	19	17	17	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3738495--3738759	30	8.8	30	77	2	230	24	22	16	36	1.94
3738628--3738759	61	2.2	60	83	1	156	24	22	18	34	1.97
3741599--3741668	26	2.7	26	81	0	77	22	35	15	25	1.94
3742307--3742394	30	2.9	30	82	0	113	27	26	12	34	1.92
3743061--3743121	30	2.0	30	81	12	72	44	8	3	44	1.50
3744094--3744213	61	2.0	61	84	0	159	38	10	12	38	1.78
3744631--3744730	49	2.0	49	100	0	200	34	23	10	33	1.88
3749769--3749806	19	2.0	19	100	0	76	15	26	26	31	1.96
3756535--3756611	31	2.5	31	78	2	82	15	27	29	27	1.96
3760448--3760504	3	19.0	3	92	0	87	63	1	0	35	1.05
3761161--3761246	36	2.4	36	86	0	118	37	11	18	32	1.87
3761372--3761445	36	2.0	36	86	5	103	39	10	18	31	1.86
3769808--3769866	23	2.6	23	86	0	91	28	16	22	32	1.96
3777082--3777129	24	2.0	24	84	4	62	22	27	14	35	1.93
3779738--3779830	26	3.6	26	98	0	177	27	11	13	46	1.79
3795040--3795368	19	16.4	19	72	12	178	22	20	20	35	1.96
3795070--3795137	35	1.9	35	90	0	109	27	22	13	36	1.91
3795040--3795267	40	5.7	40	79	10	250	22	20	20	36	1.95
3795040--3795368	106	3.3	101	80	9	361	22	20	20	35	1.96
3795261--3795371	40	2.8	40	92	0	186	21	19	21	36	1.95
3795465--3795490	6	4.3	6	100	0	52	34	50	15	0	1.45
3795786--3795892	19	5.3	19	76	13	88	32	25	5	36	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3795796--3795853	22	2.6	22	74	12	57	31	27	6	34	1.83
3795895--3795947	19	2.8	18	88	11	79	26	20	24	28	1.99
3797188--3797213	7	3.7	7	100	0	52	69	0	0	30	0.89
3797380--3797421	14	3.0	14	79	10	50	47	19	0	33	1.49
3797477--3797517	21	2.0	21	90	9	66	51	24	0	24	1.49
3797695--3797736	14	3.0	14	79	10	50	47	19	0	33	1.49
3797796--3797836	21	2.0	21	90	9	66	51	24	0	24	1.49
3799718--3799761	21	2.1	21	86	0	61	34	22	18	25	1.96
3800107--3800141	15	2.3	15	95	0	61	45	17	5	31	1.71
3800363--3800403	22	1.9	22	85	5	57	41	12	2	43	1.55
3800399--3800444	23	2.0	23	91	4	74	41	36	13	8	1.75
3802778--3802882	47	2.2	47	93	0	174	38	11	16	34	1.84
3803678--3803718	21	2.0	21	85	9	57	41	0	19	39	1.52
3805005--3805045	16	2.6	16	96	0	73	39	21	19	19	1.93
3805192--3805288	14	6.5	14	72	17	70	10	9	15	64	1.48
3805198--3805273	24	3.2	24	81	10	93	9	10	15	64	1.49
3805473--3805557	23	3.7	23	78	9	82	9	10	16	63	1.51
3805846--3805973	60	2.1	60	84	5	161	37	19	4	38	1.73
3811150--3811217	30	2.3	30	92	0	109	60	7	14	17	1.57
3812986--3813023	13	2.9	13	88	11	60	21	15	21	42	1.89
3819423--3819558	65	2.0	67	90	9	215	25	19	11	44	1.84
3821956--3822013	30	1.9	30	85	3	80	41	8	12	37	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3822742--3822798	24	2.4	23	88	5	78	40	1	0	57	1.09
3822742--3822778	3	12.3	3	88	11	58	37	0	0	62	0.96
3822815--3822871	23	2.5	23	85	2	71	42	31	10	15	1.81
3825670--3825711	15	2.6	16	82	17	52	33	4	0	61	1.17
3832613--3832772	65	2.5	65	85	5	200	33	22	16	27	1.95
3832750--3832792	19	2.4	19	84	7	54	23	32	16	27	1.96
3838551--3838673	44	2.8	42	72	17	108	28	27	18	25	1.98
3840941--3840973	11	2.8	12	90	4	50	42	15	3	39	1.62
3841329--3841486	63	2.5	64	87	7	216	32	22	16	28	1.96
3844190--3844234	23	2.0	23	90	0	72	24	26	26	22	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20