genome.fa.s9463.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009463.1 Hibiscus syriacus cultivar Beakdansim tig00113726_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3931635

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  13  of  20  ( 2327 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2521901--2522076	84	2.1	84	96	0	325	22	37	16	23	1.93
2521901--2522106	84	2.5	84	91	1	288	22	36	17	23	1.95
2523464--2523498	14	2.5	14	95	0	61	31	0	25	42	1.55
2523614--2523664	19	2.9	19	72	21	58	49	21	19	9	1.77
2523677--2523807	19	7.7	19	63	23	76	15	22	19	43	1.87
2523681--2523807	33	3.9	32	84	8	175	15	22	18	43	1.88
2523674--2523806	66	2.0	66	94	0	230	17	21	18	42	1.90
2526099--2526135	12	3.1	12	96	0	65	0	24	2	72	0.97
2527148--2527199	21	2.5	21	81	3	61	38	15	23	23	1.92
2527184--2527275	20	4.6	20	73	2	76	39	21	18	20	1.93
2527509--2527559	19	2.6	20	78	9	61	45	17	19	17	1.86
2527720--2527756	14	2.6	14	86	0	56	48	21	0	29	1.50
2529626--2529693	20	3.5	20	79	2	75	38	22	23	16	1.93
2529682--2529772	14	5.9	14	72	20	74	48	21	17	12	1.80
2529666--2529777	33	3.4	33	95	1	199	47	21	18	12	1.81
2529666--2529788	65	1.9	66	89	5	196	47	22	17	12	1.81
2529800--2529863	14	4.4	14	80	16	76	10	15	23	50	1.76
2529789--2529879	32	2.8	33	93	3	157	12	17	21	48	1.80
2529784--2529899	19	6.6	19	72	17	83	13	20	21	43	1.86
2529864--2529907	20	2.2	20	92	4	72	20	25	18	36	1.95
2531759--2531796	20	1.9	20	88	0	58	50	21	15	13	1.78
2532080--2532123	22	2.0	22	95	0	79	18	15	45	20	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2532291--2532425	20	6.7	20	80	7	121	24	17	24	33	1.96
2532291--2532428	61	2.3	61	85	0	195	23	17	23	34	1.96
2532291--2532446	61	2.6	61	82	2	161	23	18	23	33	1.97
2532414--2532465	20	2.5	21	84	3	70	19	23	19	38	1.93
2535728--2535820	21	4.6	20	78	4	96	38	19	24	17	1.92
2535728--2535820	41	2.3	41	98	0	177	38	19	24	17	1.92
2535747--2535881	41	3.3	41	81	6	123	37	21	21	19	1.94
2535809--2535923	20	5.7	20	83	2	113	33	24	18	24	1.97
2536111--2536154	22	2.0	22	100	0	88	22	45	13	18	1.84
2536418--2536455	20	1.9	20	88	0	58	13	15	21	50	1.78
2537774--2537818	18	2.5	18	85	0	63	28	44	13	13	1.81
2538285--2538330	20	2.3	20	92	0	74	39	26	19	15	1.91
2538324--2538372	18	2.6	19	90	3	82	42	20	22	14	1.88
2538384--2538441	14	3.9	14	79	16	71	8	17	25	48	1.75
2538379--2538457	32	2.4	33	95	2	142	10	18	24	46	1.80
2538398--2538515	20	6.4	19	77	11	95	13	20	24	41	1.88
2540513--2540580	19	3.8	19	83	14	92	47	16	22	14	1.82
2540599--2540656	20	2.9	20	94	0	98	17	22	22	37	1.93
2541688--2541741	24	2.2	24	90	0	81	24	16	20	38	1.92
2541916--2541940	12	2.1	12	100	0	50	72	0	28	0	0.86
2543251--2543381	19	7.7	19	66	23	94	42	19	22	14	1.88
2543251--2543377	33	3.8	33	88	4	202	42	19	22	14	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2543252--2543384	66	2.0	66	97	0	248	41	19	22	16	1.90
2543377--2543417	20	2.1	20	86	4	57	14	19	21	43	1.87
2543559--2543595	14	2.6	14	91	0	65	45	24	0	29	1.53
2544982--2545065	42	2.0	42	83	0	105	23	16	38	21	1.93
2547057--2547116	20	3.0	20	82	0	75	46	18	23	11	1.81
2547081--2547179	33	3.0	33	84	1	135	39	26	24	10	1.87
2547151--2547201	19	2.7	19	96	0	93	45	21	21	11	1.84
2547197--2547240	19	2.4	18	85	7	61	9	15	27	47	1.76
2547207--2547276	19	3.9	19	73	19	69	11	18	22	47	1.81
2547833--2547933	20	4.9	21	71	12	59	18	19	18	42	1.89
2547796--2547889	20	4.7	20	80	2	89	23	18	24	34	1.96
2547817--2547951	41	3.3	41	82	4	139	19	21	20	38	1.94
2547878--2547970	20	4.6	20	78	4	96	17	24	18	39	1.91
2547878--2547970	41	2.3	41	100	0	186	17	24	18	39	1.91
2548856--2548891	2	18.0	2	100	0	72	50	0	0	50	1.00
2553434--2553484	19	2.6	19	81	3	57	35	31	11	21	1.90
2553533--2553681	40	3.7	40	85	3	167	39	21	16	22	1.92
2553558--2553681	20	6.2	20	84	5	144	39	22	16	20	1.92
2553837--2553878	22	1.9	22	95	0	75	21	42	14	21	1.88
2554260--2554292	14	2.4	14	94	0	57	9	18	21	51	1.73
2556267--2556308	4	10.5	4	84	0	57	26	0	4	69	1.08
2556479--2556549	21	3.4	22	76	7	67	21	36	22	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2557883--2558055	67	2.6	68	87	9	223	29	2	16	52	1.56
2557911--2558055	67	2.2	67	91	3	233	31	1	16	51	1.53
2558205--2558243	20	2.0	20	89	0	60	28	20	15	35	1.93
2558543--2558577	6	5.8	6	86	0	52	17	2	20	60	1.49
2559530--2559566	18	2.1	18	89	0	56	51	10	5	32	1.60
2560439--2560474	18	2.0	18	94	0	63	19	2	22	55	1.56
2562625--2562676	24	2.2	24	82	6	61	36	17	19	26	1.94
2562788--2562821	12	2.8	12	90	0	50	14	0	29	55	1.40
2563445--2563491	22	2.0	24	88	8	71	25	4	42	27	1.73
2563598--2563644	18	2.6	18	82	3	58	31	14	23	29	1.95
2563618--2563884	20	13.4	20	74	11	140	25	14	22	38	1.92
2563676--2563863	40	4.7	39	75	8	180	22	14	22	39	1.91
2563676--2563851	60	2.9	60	79	5	212	23	14	22	39	1.91
2563741--2563928	100	1.9	99	81	8	229	26	14	22	37	1.92
2565793--2565853	31	2.0	31	93	0	104	32	21	14	31	1.93
2571318--2571766	223	2.0	225	99	0	884	29	17	20	32	1.96
2576180--2576323	71	2.0	71	93	0	243	41	23	10	24	1.85
2578291--2578494	19	10.8	18	76	13	153	31	7	23	37	1.83
2578291--2578494	57	3.6	56	84	5	259	31	7	23	37	1.83
2578522--2578665	68	2.1	67	85	1	189	27	20	27	25	1.99
2578614--2578717	52	2.0	53	86	1	147	29	19	25	25	1.98
2584748--2584857	57	1.9	57	92	0	184	30	9	25	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2584746--2584931	57	3.3	55	80	11	180	31	8	22	37	1.84
2584766--2584941	57	3.1	57	82	8	182	31	7	22	38	1.83
2584753--2584951	19	10.4	20	71	12	125	31	8	23	36	1.85
2584994--2585238	136	1.8	136	81	3	305	32	23	21	23	1.98
2584981--2585250	68	4.0	68	75	1	254	31	22	22	22	1.98
2592818--2592899	23	3.7	22	82	9	87	23	31	24	20	1.98
2598107--2598159	21	2.5	21	93	0	88	30	32	20	16	1.95
2598155--2598473	42	7.7	42	90	3	497	21	19	24	35	1.96
2598155--2598473	82	3.9	83	90	3	493	21	19	24	35	1.96
2598155--2598476	124	2.6	124	96	1	576	21	19	24	34	1.96
2599255--2599422	42	4.1	42	87	6	258	33	23	21	20	1.97
2599247--2599422	61	2.9	60	80	13	209	32	24	21	21	1.97
2599251--2599414	82	2.0	80	94	2	283	32	23	21	21	1.98
2600299--2600344	6	8.0	6	77	18	53	0	15	4	80	0.86
2600302--2600344	11	3.8	12	84	9	54	0	16	4	79	0.90
2600297--2600344	22	2.2	22	88	7	71	0	16	4	79	0.89
2600297--2600344	11	4.4	11	82	7	53	0	16	4	79	0.89
2600299--2600363	29	2.2	29	84	10	80	1	16	4	76	1.02
2608881--2608919	15	2.6	14	84	11	51	12	12	0	74	1.08
2616104--2616346	99	2.4	102	85	6	323	35	24	18	21	1.96
2618465--2618503	15	2.6	14	84	11	51	12	12	0	74	1.08
2625202--2625240	16	2.4	16	95	0	69	51	17	5	25	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2642109--2642137	12	2.4	12	100	0	58	24	13	17	44	1.85
2644710--2644783	16	4.6	16	70	21	57	51	16	12	20	1.76
2645448--2645483	18	2.0	18	89	10	56	58	0	5	36	1.22
2645448--2645484	19	2.0	18	89	5	56	59	0	5	35	1.20
2653173--2653226	27	2.0	27	85	0	72	25	18	12	42	1.86
2656341--2656466	32	3.9	32	72	10	96	39	26	9	23	1.86
2661721--2661768	20	2.4	20	100	0	96	18	27	10	43	1.82
2662374--2662500	42	3.0	42	79	4	121	24	26	18	29	1.98
2664536--2664577	18	2.3	18	87	0	66	30	0	2	66	1.04
2664536--2664589	27	2.1	26	83	13	67	31	0	1	66	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20