genome.fa.s9463.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009463.1 Hibiscus syriacus cultivar Beakdansim tig00113726_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3931635

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  3  of  20  ( 2327 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
400059--400143	37	2.2	39	81	4	102	30	12	16	40	1.86
400473--400508	14	2.7	14	91	8	58	27	0	22	50	1.50
401530--401559	2	15.0	2	100	0	60	50	0	0	50	1.00
404651--404686	5	7.2	5	100	0	72	80	0	0	19	0.71
406650--406695	3	15.7	3	86	13	69	67	0	2	30	1.03
407485--407537	26	2.0	26	92	0	88	47	1	41	9	1.47
409735--409772	19	2.0	19	89	0	58	47	7	2	42	1.46
415506--415569	21	3.1	21	70	4	67	17	17	26	39	1.91
415558--415610	22	2.4	22	93	0	97	16	16	28	37	1.91
415709--415746	6	6.5	6	96	3	69	31	52	15	0	1.43
416362--416508	41	3.6	41	88	0	231	34	23	21	21	1.97
416374--416488	21	5.6	21	64	4	81	32	24	19	24	1.98
416436--416512	20	3.8	20	74	3	82	37	23	22	16	1.94
420111--420197	40	2.2	40	83	4	104	39	19	16	25	1.92
420145--420197	20	2.7	20	96	0	97	35	18	18	26	1.95
422378--422429	21	2.5	21	81	3	61	38	19	25	17	1.93
422415--422492	41	1.9	41	86	0	111	39	21	16	21	1.92
422418--422512	20	4.7	20	80	2	91	34	24	17	23	1.96
422700--422765	22	3.0	22	90	0	105	21	43	15	19	1.87
423010--423047	20	1.9	20	88	0	58	13	15	21	50	1.78
424366--424410	18	2.5	18	85	0	63	26	42	15	15	1.87
424883--424937	20	2.8	20	94	2	94	30	23	29	16	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
424938--424995	14	3.9	14	79	16	71	48	25	17	8	1.75
424922--425005	32	2.6	32	96	1	150	47	22	19	10	1.80
426900--426937	14	2.6	15	83	4	51	31	0	21	47	1.51
428407--428431	12	2.1	12	100	0	50	72	0	28	0	0.86
430698--430795	19	5.7	19	69	22	90	43	19	24	12	1.85
430698--430791	33	2.8	33	98	0	179	43	19	24	12	1.85
430948--430983	14	2.6	14	86	4	56	47	25	0	27	1.52
432314--432380	21	3.2	21	68	4	55	19	20	35	23	1.95
432314--432436	42	2.9	41	80	7	113	22	17	36	22	1.95
434376--434470	19	4.9	19	89	2	145	47	15	22	14	1.82
434376--434468	38	2.4	39	94	1	161	48	16	21	13	1.80
434469--434513	19	2.4	19	88	0	63	8	11	26	53	1.65
435067--435118	20	2.6	20	93	0	86	25	19	28	26	1.98
435067--435160	20	4.7	20	78	2	80	24	18	23	34	1.96
435149--435244	41	2.3	41	98	0	147	18	23	17	39	1.92
435149--435241	20	4.6	20	78	4	96	18	24	18	38	1.92
435508--436106	296	2.0	298	90	0	950	35	12	24	26	1.92
437049--437104	21	2.7	21	88	5	87	44	21	23	10	1.83
438900--438954	23	2.4	23	81	6	76	32	10	25	30	1.90
441400--441449	25	2.0	25	100	0	100	28	32	8	32	1.86
442441--442483	2	22.0	2	85	4	61	51	2	2	44	1.27
442442--442484	21	2.0	21	90	0	68	53	2	2	41	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
446115--446170	11	4.8	11	72	20	51	66	1	1	30	1.12
446115--446170	22	2.4	23	79	11	60	66	1	1	30	1.12
447878--447926	3	16.3	3	82	0	62	57	0	0	42	0.99
447866--447926	18	3.2	19	88	11	90	55	0	0	44	0.99
447866--447926	21	3.0	21	81	18	85	55	0	0	44	0.99
448080--448563	76	6.4	76	93	2	814	34	22	19	23	1.96
448080--448563	226	2.1	228	93	2	823	34	22	19	23	1.96
448080--448564	151	3.2	151	91	3	771	34	22	19	23	1.96
449332--449386	22	2.5	22	87	0	83	36	14	14	34	1.87
449745--449899	54	2.9	53	89	1	229	20	23	18	37	1.94
451990--452313	114	2.9	112	88	6	484	31	19	16	33	1.94
454414--454471	7	7.9	7	75	17	55	3	24	0	72	1.00
454416--454472	22	2.5	23	88	2	80	3	22	0	73	0.98
454416--454480	15	4.3	16	78	14	68	4	21	0	73	1.00
454445--454482	17	2.2	17	90	9	60	5	21	0	73	1.02
454416--454504	15	6.0	15	72	11	58	4	19	0	76	0.95
455861--455925	32	2.1	31	88	2	94	23	26	16	33	1.96
456322--456380	19	3.3	19	75	20	72	8	25	40	25	1.83
456483--456541	29	2.0	31	90	6	95	44	13	5	37	1.66
458642--458711	34	2.1	34	86	5	99	21	28	15	34	1.94
458983--459026	21	2.1	21	91	4	72	29	25	20	25	1.99
459131--459207	21	4.0	21	76	20	80	12	27	36	23	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459133--459201	35	2.0	35	91	2	113	14	27	33	24	1.94
459153--459180	14	2.0	14	100	0	56	14	28	28	28	1.95
459505--459550	21	2.2	21	96	0	83	34	2	8	54	1.43
461490--461559	34	2.1	32	86	5	95	21	28	15	34	1.94
461775--461814	21	1.9	22	90	10	66	12	10	40	37	1.77
461842--461884	21	2.0	21	95	0	77	27	27	20	23	1.99
461975--462053	21	4.0	21	78	18	98	12	27	36	22	1.91
461997--462026	15	2.0	15	100	0	60	13	26	33	26	1.93
461976--462047	36	2.0	36	94	0	126	13	27	34	23	1.93
462143--462202	29	2.0	31	90	6	97	43	15	6	35	1.72
465301--465342	14	2.8	15	89	7	59	69	4	0	26	1.08
465981--466024	21	2.0	22	82	4	54	45	0	6	47	1.29
466901--466934	9	3.8	9	96	0	59	0	35	0	64	0.94
467270--467307	18	2.1	19	90	5	60	0	7	36	55	1.29
467846--467928	12	7.3	11	82	11	80	57	0	0	42	0.98
467858--467924	3	22.3	3	87	0	98	59	0	0	40	0.97
467846--467924	18	4.2	19	85	11	110	58	0	0	41	0.98
468514--468558	23	2.0	23	90	0	72	46	8	11	33	1.70
468770--469303	182	2.9	182	94	0	942	28	16	11	42	1.83
469977--470619	257	2.5	257	97	0	1196	45	9	4	41	1.56
472694--472736	19	2.3	19	84	8	52	79	0	9	11	0.95
472686--472749	25	2.4	26	87	7	85	71	1	9	17	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
476250--476278	11	2.6	11	100	0	58	93	0	6	0	0.36
477574--477743	39	4.7	35	81	11	125	43	8	4	43	1.55
477595--477741	39	3.9	38	82	9	178	44	8	3	43	1.52
477590--477887	37	8.3	37	78	16	290	44	9	3	43	1.52
477649--477853	64	3.1	64	75	13	182	43	9	1	45	1.46
477728--477767	12	3.0	14	78	14	57	50	12	0	37	1.41
477719--477785	26	2.6	26	88	2	91	49	10	1	38	1.46
477631--477842	101	2.1	101	88	7	313	44	9	2	43	1.50
483102--483136	14	2.5	14	95	0	61	45	11	0	42	1.40
486779--486860	29	2.8	29	77	14	78	43	20	4	30	1.73
491534--491825	39	7.5	39	80	5	340	40	14	7	37	1.74
491534--491825	116	2.5	117	87	6	414	40	14	7	37	1.74
491791--492051	58	4.5	57	76	7	197	40	14	8	36	1.77
491956--492065	58	1.9	58	88	7	170	36	12	11	39	1.80
492118--492215	45	2.2	45	83	3	117	42	13	10	33	1.78
492238--492371	45	3.0	45	87	1	189	38	15	11	35	1.83
497055--497094	20	2.0	20	85	0	53	32	10	27	30	1.89
497430--497631	55	4.0	47	86	9	201	33	10	18	37	1.86
497476--497676	55	3.7	55	93	2	341	35	9	17	37	1.82
497416--497748	165	2.1	156	78	7	346	33	10	19	36	1.87
498208--498235	13	2.2	13	100	0	56	21	7	42	28	1.79
499062--499216	64	2.4	63	82	5	197	32	18	22	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
499917--499965	2	24.5	2	100	0	98	51	0	0	48	1.00
501391--501423	12	2.6	13	90	4	50	48	6	9	36	1.60
505752--505971	117	1.9	117	84	4	293	30	14	6	48	1.70
507257--507298	14	3.0	14	92	0	75	21	26	28	23	1.99
507324--507458	64	2.1	64	84	5	175	31	14	23	30	1.94
511417--511480	20	3.2	20	74	12	78	42	12	17	28	1.85
511408--511501	39	2.4	39	96	0	170	42	11	15	29	1.83
512644--512689	22	2.1	22	84	4	58	41	6	4	47	1.49
514515--514556	19	2.2	19	86	0	57	35	14	21	28	1.92
514608--514655	20	2.4	20	92	0	87	29	12	20	37	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20