genome.fa.s9463.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009463.1 Hibiscus syriacus cultivar Beakdansim tig00113726_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3931635

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  5  of  20  ( 2327 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
793174--793226	22	2.4	22	83	0	79	22	16	22	37	1.94
793339--793387	6	8.5	6	97	2	84	30	53	16	0	1.43
793891--793933	6	7.7	6	97	2	65	0	18	53	27	1.45
794044--794096	22	2.4	22	90	0	88	35	28	18	16	1.93
794088--794195	20	5.7	20	69	14	93	37	24	22	15	1.93
794085--794194	41	3.0	36	86	9	143	37	24	21	16	1.93
794128--794194	34	2.0	34	93	0	116	37	23	23	14	1.93
794170--794225	28	2.0	28	82	6	69	33	16	28	21	1.95
797114--797155	21	2.0	22	90	4	68	23	14	19	42	1.87
797916--797948	16	2.1	16	100	0	66	57	24	12	6	1.57
799129--799183	24	2.3	24	87	6	76	58	21	10	9	1.60
799119--799173	14	3.9	14	95	0	83	60	18	10	10	1.59
815020--815465	226	2.0	225	96	0	829	34	20	17	28	1.95
823561--823741	36	5.1	36	89	3	276	38	19	24	17	1.93
832976--833003	6	4.7	6	100	0	56	53	17	14	14	1.73
846635--846674	21	1.9	21	94	0	71	12	25	37	25	1.91
858254--858369	58	2.0	60	81	10	141	44	5	15	34	1.69
860414--860593	41	4.4	40	78	8	121	22	15	22	39	1.92
860449--860600	42	3.7	40	77	11	130	21	13	21	42	1.88
860449--860600	41	3.7	41	80	8	157	21	13	21	42	1.88
860524--860646	42	3.0	41	79	3	120	25	13	16	44	1.84
864336--864512	60	3.0	60	83	5	189	32	22	4	40	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
864688--864802	58	2.0	60	83	10	148	46	6	14	33	1.70
866983--867122	41	3.4	41	80	7	113	19	17	23	40	1.91
867002--867129	42	3.1	39	82	8	130	23	16	21	39	1.92
867055--867167	42	2.8	41	85	6	140	22	15	18	44	1.86
869522--869556	16	2.2	16	90	10	54	42	2	2	51	1.31
876279--876341	21	3.0	21	84	9	83	55	15	28	0	1.41
876681--876948	44	6.1	44	81	0	266	29	20	19	30	1.97
876705--876948	132	1.8	132	82	0	308	30	18	20	30	1.96
876657--876948	88	3.3	88	82	0	343	29	20	20	29	1.98
884657--884735	22	3.3	22	68	29	63	69	1	7	21	1.20
884631--884734	50	2.1	50	87	1	145	65	1	6	25	1.28
884726--884813	10	8.2	10	69	13	50	76	2	6	14	1.10
884696--884750	28	2.0	28	85	7	76	76	1	7	14	1.08
884767--884809	20	2.2	20	87	8	61	74	2	4	18	1.10
884731--884810	34	2.3	34	84	4	97	76	2	7	13	1.11
885786--886285	200	2.5	200	83	2	599	27	18	20	34	1.95
886998--887069	20	3.6	20	90	3	110	36	16	27	19	1.93
887804--888327	68	7.7	68	88	0	782	31	16	24	27	1.96
888285--888579	81	3.6	81	89	1	423	35	10	23	30	1.89
891214--891245	2	16.5	2	93	6	57	50	0	0	50	1.00
893679--894154	68	7.0	68	88	3	647	32	16	23	27	1.95
893681--894154	204	2.3	204	90	0	741	32	16	22	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
894097--894486	81	4.8	81	85	0	492	35	11	22	31	1.89
896495--896535	20	2.0	20	85	0	55	31	26	7	34	1.84
902998--903450	68	6.8	68	81	7	523	33	16	21	27	1.95
903435--903502	35	1.9	35	96	0	127	35	13	20	30	1.91
903470--903753	81	3.5	81	86	0	372	35	11	23	29	1.89
904188--904229	20	2.0	21	86	9	59	38	2	30	28	1.70
910055--910471	111	3.7	111	87	0	566	28	18	21	31	1.97
912169--912229	2	30.5	2	96	0	113	49	1	0	49	1.10
917900--917938	19	2.1	19	100	0	78	10	15	0	74	1.07
924587--924626	2	19.5	2	94	5	71	47	0	2	50	1.14
930515--930584	20	3.3	21	70	16	63	42	2	4	50	1.37
934113--934154	22	1.9	22	95	0	75	28	28	11	30	1.92
934895--934935	16	2.7	16	78	21	52	43	9	2	43	1.50
935093--935145	15	3.6	15	92	2	72	16	13	26	43	1.85
935099--935145	15	3.1	15	93	0	76	19	14	25	40	1.90
935766--935817	20	2.6	20	76	11	70	34	0	0	65	0.93
936323--936365	21	2.0	21	95	0	77	37	16	4	41	1.69
941954--942016	24	2.5	26	84	10	94	42	9	0	47	1.36
943203--943249	15	3.1	15	76	14	51	38	2	0	59	1.09
943261--943297	17	2.2	17	86	13	51	54	0	8	37	1.30
952327--952377	22	2.3	22	82	3	66	29	19	25	25	1.99
956873--956936	22	3.0	20	77	8	65	28	23	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
961034--961075	21	2.0	22	85	4	59	26	21	14	38	1.91
961605--961654	25	2.0	25	100	0	100	24	12	8	56	1.62
965334--965366	16	2.1	16	100	0	66	57	24	12	6	1.57
966315--966377	24	2.6	24	87	5	83	53	20	14	11	1.70
966810--967217	204	2.0	204	94	3	725	24	25	17	33	1.96
972235--972283	24	2.0	24	100	0	98	36	18	16	28	1.92
975559--975629	27	2.6	28	82	8	83	49	2	2	45	1.31
976933--976996	3	21.0	3	73	20	53	59	1	0	39	1.07
976933--976996	30	2.1	31	91	2	103	59	1	0	39	1.07
976958--976999	19	2.2	19	87	8	59	59	2	0	38	1.10
990619--990666	19	2.5	20	82	6	62	31	16	6	45	1.72
991983--992046	20	3.2	20	80	4	65	26	17	23	32	1.96
991968--992026	20	2.9	20	79	2	64	27	15	25	32	1.95
992165--992215	20	2.5	20	96	0	93	35	5	13	45	1.68
993531--993592	24	2.6	24	86	0	79	51	20	11	16	1.74
993558--993595	12	3.2	12	81	11	51	55	15	7	21	1.66
993500--993582	36	2.3	36	77	4	87	51	19	12	16	1.75
999025--999088	23	2.8	23	76	6	69	25	20	4	50	1.67
1006772--1007307	81	6.6	81	87	0	716	29	25	11	34	1.91
1007584--1007796	55	3.9	55	88	1	302	30	20	14	34	1.92
1012175--1012659	81	6.0	81	87	0	666	27	24	10	36	1.88
1012940--1013150	55	3.8	55	89	5	286	31	18	13	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1013501--1013554	19	2.6	21	85	8	67	29	18	16	35	1.93
1013691--1013785	48	2.0	48	95	0	172	26	21	12	40	1.89
1016677--1016746	21	3.3	21	93	0	122	45	10	11	32	1.73
1025269--1025306	18	2.2	18	90	4	60	21	10	5	63	1.46
1037511--1037570	20	2.8	21	85	7	77	23	33	21	21	1.97
1037553--1037592	21	1.9	21	89	0	62	25	40	25	10	1.86
1050253--1050353	50	2.0	50	80	3	114	37	18	8	34	1.82
1050407--1050445	20	1.9	21	85	15	55	41	5	7	46	1.55
1050690--1050816	64	2.0	65	89	4	195	30	24	16	28	1.96
1056607--1056662	22	2.7	21	83	10	62	30	23	17	28	1.97
1058190--1058233	21	2.1	21	86	0	61	9	36	15	38	1.80
1059264--1059302	19	2.1	19	90	0	60	23	35	15	25	1.94
1059250--1059410	65	2.5	65	85	3	209	31	25	16	27	1.96
1059250--1059430	64	2.8	64	83	2	211	29	25	17	27	1.97
1060213--1060253	2	20.5	2	100	0	82	48	0	0	51	1.00
1060950--1060985	18	2.0	18	88	0	54	50	0	0	50	1.00
1062169--1062263	39	2.3	42	87	8	133	37	0	34	27	1.57
1062217--1062264	17	2.9	17	93	3	80	33	0	39	27	1.57
1062169--1062247	22	3.5	22	96	1	140	40	0	32	26	1.56
1065819--1065867	21	2.3	21	96	0	89	22	20	10	46	1.80
1072222--1072267	22	2.1	22	91	0	74	34	21	21	21	1.97
1073000--1073040	21	2.0	21	85	9	57	26	26	24	21	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1073063--1073103	21	2.0	21	95	0	73	29	24	21	24	1.99
1080231--1080458	117	1.9	117	81	4	271	39	14	20	25	1.91
1080408--1080569	77	2.1	78	85	6	213	35	16	15	32	1.90
1082476--1082504	10	2.7	11	94	5	51	17	0	0	82	0.66
1083022--1083091	31	2.3	31	100	0	140	32	15	24	27	1.95
1091463--1093111	826	2.0	822	93	0	2821	30	15	21	32	1.94
1097700--1097814	24	4.8	24	88	4	160	40	20	14	25	1.90
1097683--1097817	48	2.8	48	86	3	173	40	20	12	25	1.88
1108195--1108225	12	2.7	12	95	5	55	29	9	0	61	1.28
1116736--1116784	16	3.1	16	90	0	80	28	24	14	32	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20