genome.fa.s9586.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009586.1 Hibiscus syriacus cultivar Beakdansim tig00116964_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3773412

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  11  of  19  ( 2170 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2176528--2176678	19	8.7	19	66	21	98	11	21	20	45	1.83
2176532--2176658	33	3.8	33	94	0	218	11	21	19	47	1.81
2176631--2176724	20	4.7	20	72	13	68	21	20	23	35	1.96
2178986--2179022	12	3.1	12	100	0	74	0	27	0	72	0.84
2179197--2179250	24	2.2	24	90	0	81	40	20	16	22	1.91
2179985--2180119	20	6.7	20	84	5	146	23	19	25	31	1.98
2180128--2180180	21	2.5	20	82	8	70	35	16	24	22	1.95
2185017--2185060	2	22.0	2	100	0	88	0	50	0	50	1.00
2185433--2185461	15	1.9	15	100	0	58	20	13	10	55	1.68
2185768--2185794	11	2.5	11	100	0	54	66	0	0	33	0.92
2190430--2190470	8	5.2	8	82	5	57	34	0	29	36	1.58
2190541--2190913	128	2.9	128	94	0	640	22	24	20	32	1.98
2191235--2191311	32	2.4	30	80	8	82	62	1	0	36	1.04
2191269--2191343	33	2.2	34	83	9	91	65	5	0	29	1.15
2192149--2192199	26	1.9	27	84	4	68	50	1	1	45	1.24
2192221--2192968	334	2.2	337	88	5	1114	43	5	7	43	1.54
2194953--2194994	21	2.0	21	85	0	57	50	0	0	50	1.00
2198514--2198633	56	2.2	54	86	7	163	46	11	22	19	1.82
2200202--2200339	73	1.9	73	100	0	276	45	10	14	28	1.79
2200943--2200994	18	3.1	16	76	17	52	25	23	7	44	1.79
2205635--2205889	41	6.2	41	91	0	375	31	24	21	23	1.98
2205720--2205830	20	5.4	20	68	19	86	32	23	22	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2205633--2205889	82	3.1	82	91	3	417	31	24	21	22	1.98
2212057--2212115	23	2.6	25	76	17	65	33	1	5	59	1.29
2214897--2214935	18	2.2	18	86	9	53	0	28	2	69	1.02
2216727--2216778	20	2.6	21	79	11	56	40	5	0	53	1.25
2225137--2225486	183	1.9	183	95	0	628	28	20	21	30	1.98
2226775--2226861	37	2.4	37	88	1	122	25	20	13	40	1.89
2226680--2226927	102	2.4	105	87	4	369	31	20	13	35	1.91
2226811--2226990	66	2.8	66	89	4	260	32	21	11	34	1.90
2226707--2227092	166	2.3	169	90	4	595	31	20	12	36	1.89
2227043--2227128	36	2.4	36	86	3	111	25	18	13	41	1.88
2226877--2227223	100	3.5	100	85	5	451	31	19	11	37	1.88
2227111--2227169	30	2.0	30	86	6	84	40	16	10	32	1.82
2227183--2227297	36	3.1	36	83	4	158	30	20	10	39	1.86
2227195--2227297	37	2.8	37	83	4	145	28	20	10	40	1.85
2227338--2227426	33	2.6	35	87	8	137	41	16	10	31	1.82
2227338--2227452	31	3.5	33	85	8	153	37	18	11	33	1.86
2227407--2227592	67	2.7	67	82	4	221	29	20	12	37	1.90
2229517--2229576	20	3.0	20	76	18	61	23	6	0	70	1.11
2229525--2229586	21	3.0	20	73	21	56	24	4	0	70	1.06
2232503--2232550	23	2.0	24	88	4	71	60	10	0	29	1.30
2233127--2233162	2	18.0	2	100	0	72	50	0	0	50	1.00
2238834--2239745	455	2.0	454	97	0	1725	36	16	16	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2240505--2240547	17	2.6	16	81	7	50	39	2	0	58	1.11
2241829--2241853	12	2.1	12	100	0	50	84	0	0	16	0.63
2247225--2247981	55	13.7	55	87	1	912	30	21	18	28	1.97
2248002--2248107	37	2.9	37	90	2	160	23	20	19	35	1.96
2249118--2249147	15	1.9	16	93	6	53	26	30	26	16	1.97
2249232--2249341	29	3.8	29	95	2	195	17	20	16	45	1.85
2251491--2251560	7	9.9	7	74	9	61	5	20	0	74	1.02
2251495--2251552	22	2.6	23	83	5	66	6	20	0	72	1.07
2251493--2251571	30	2.6	29	82	9	88	7	20	0	72	1.09
2251517--2251559	15	2.9	15	80	16	54	2	20	0	76	0.89
2251517--2251630	7	14.6	8	69	22	57	6	21	0	72	1.05
2251513--2251566	22	2.3	23	90	6	83	5	20	0	74	1.02
2251559--2251641	32	2.6	30	76	14	78	7	20	0	72	1.08
2251588--2251638	24	2.2	23	85	3	66	3	21	0	74	0.98
2251612--2251653	10	4.6	9	86	13	59	0	23	0	76	0.79
2251595--2251640	9	5.8	8	80	17	51	2	21	0	76	0.90
2264455--2264508	18	3.3	16	81	18	67	35	0	1	62	1.06
2265265--2265317	24	2.2	24	96	0	97	13	35	15	35	1.86
2276771--2276806	18	2.0	18	94	0	63	27	25	19	27	1.99
2281897--2281942	18	2.6	17	80	12	58	23	6	0	69	1.11
2284960--2285033	15	4.9	15	75	3	58	24	12	1	62	1.38
2286447--2286477	8	3.9	8	91	0	53	22	3	0	74	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2288717--2288762	22	2.1	22	95	0	83	34	17	26	21	1.95
2302724--2302989	36	7.4	36	84	6	263	35	22	19	21	1.96
2302728--2302955	72	3.2	72	85	6	293	35	23	20	20	1.96
2302724--2302971	108	2.3	108	83	4	329	36	22	20	20	1.95
2303371--2303720	51	6.7	51	87	4	450	32	20	25	21	1.97
2303370--2303760	102	3.7	103	84	7	384	31	19	25	23	1.98
2303719--2303940	55	4.0	55	95	0	354	30	15	24	29	1.96
2303361--2304084	55	13.5	54	83	6	269	31	18	24	25	1.97
2313530--2313592	21	2.9	21	83	4	63	20	38	25	15	1.92
2313574--2313613	21	1.9	21	89	0	62	25	40	25	10	1.86
2318686--2318713	2	14.0	2	100	0	56	50	0	0	50	1.00
2320788--2320911	62	2.0	63	82	4	153	32	18	19	29	1.96
2322836--2322882	13	3.6	13	91	0	67	29	12	17	40	1.86
2322875--2323040	85	2.0	85	93	0	287	30	21	16	31	1.95
2328877--2328924	20	2.5	20	83	13	64	31	16	4	47	1.65
2328877--2328924	19	2.5	19	86	10	62	31	16	4	47	1.65
2332101--2332125	2	12.5	2	100	0	50	52	0	0	48	1.00
2332447--2332472	3	8.7	3	100	0	52	30	0	0	69	0.89
2338390--2338424	11	3.0	11	84	15	52	37	2	0	60	1.12
2338390--2338431	13	3.4	12	81	12	50	38	2	0	59	1.10
2339567--2339759	98	2.0	98	95	0	350	29	14	23	32	1.94
2340060--2340122	21	3.0	22	80	15	71	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2340082--2340125	8	6.0	8	75	20	51	47	0	0	52	1.00
2341262--2341314	21	2.5	21	87	0	79	20	24	18	35	1.95
2341304--2341416	20	5.7	20	92	0	181	41	20	17	20	1.90
2341615--2341677	22	2.9	21	80	4	72	28	36	12	22	1.91
2342048--2342114	20	3.3	20	85	0	71	19	16	20	43	1.88
2342081--2342124	20	2.2	20	83	0	52	15	13	18	52	1.75
2343966--2344144	20	9.6	20	79	16	188	41	21	18	18	1.91
2343969--2344049	33	2.4	33	85	2	99	45	22	19	12	1.83
2344187--2344274	20	4.4	20	92	2	133	23	20	21	34	1.97
2344187--2344274	39	2.2	40	89	2	133	23	20	21	34	1.97
2344750--2344845	39	2.4	40	83	10	108	22	35	19	21	1.96
2345097--2345503	202	2.0	201	88	10	614	28	8	20	41	1.82
2346416--2346451	14	2.6	14	90	0	54	30	0	22	47	1.52
2346593--2346719	20	6.7	19	73	13	84	15	21	21	41	1.90
2346632--2346719	40	2.2	40	84	6	108	18	20	22	38	1.93
2349083--2349136	24	2.2	24	93	0	90	40	20	18	20	1.91
2349083--2349150	24	2.8	24	84	0	64	38	20	17	23	1.93
2349977--2350023	20	2.3	20	92	0	76	21	19	27	31	1.97
2350010--2350183	20	8.6	20	92	1	294	19	20	20	39	1.93
2350180--2350225	21	2.2	21	88	0	65	36	17	28	17	1.92
2351388--2351452	20	3.2	20	72	20	55	41	0	1	56	1.08
2351849--2351925	20	3.8	20	76	11	77	33	28	15	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2351934--2351999	21	3.2	21	89	2	98	19	24	16	39	1.92
2352016--2352063	21	2.3	21	85	3	62	41	27	12	18	1.86
2352061--2352099	20	2.0	20	100	0	78	46	10	20	23	1.81
2352376--2352483	20	5.4	20	73	3	92	39	23	14	22	1.91
2352372--2352504	40	3.3	40	81	4	126	42	21	13	22	1.87
2352440--2352625	20	9.2	20	85	2	214	45	14	17	22	1.84
2352998--2353087	40	2.2	41	82	2	110	21	18	13	46	1.83
2353024--2353091	20	3.3	20	91	2	109	23	17	13	45	1.84
2353105--2353155	19	2.6	19	87	3	66	21	11	31	35	1.90
2355617--2355657	22	1.9	21	85	5	55	17	12	9	60	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19