genome.fa.s9586.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009586.1 Hibiscus syriacus cultivar Beakdansim tig00116964_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3773412

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  4  of  19  ( 2170 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
610645--610706	24	2.6	24	94	0	106	9	12	24	53	1.69
611802--611868	16	4.3	16	88	3	93	10	10	20	58	1.61
611796--611860	32	2.0	32	90	0	103	7	10	24	56	1.59
611930--611962	16	2.1	16	94	0	57	6	9	24	60	1.49
612502--612586	42	2.0	42	90	0	134	37	12	11	37	1.81
613301--613436	40	3.4	40	98	0	263	37	15	13	33	1.87
613557--613616	25	2.5	24	81	10	61	43	1	1	53	1.20
619757--619796	5	7.8	5	88	2	53	77	2	0	20	0.88
619851--619895	20	2.3	20	81	7	58	71	8	6	13	1.31
628751--628799	22	2.4	21	81	18	59	6	14	4	75	1.14
628757--628799	22	2.0	21	86	13	61	6	13	4	74	1.19
629324--629374	25	2.0	25	85	7	68	62	1	5	29	1.29
632613--632701	42	2.1	43	85	2	117	58	21	2	17	1.50
640085--640124	21	2.0	21	85	5	55	12	40	10	37	1.77
642295--642321	13	2.1	13	100	0	54	29	22	0	48	1.51
651906--651965	29	2.1	29	83	0	75	36	0	10	53	1.35
651963--652007	14	2.9	16	83	12	67	42	6	8	42	1.62
652639--652696	2	29.0	2	96	0	107	50	1	0	48	1.11
652703--652733	16	1.9	16	93	0	53	35	0	12	51	1.40
653175--653202	2	14.0	2	100	0	56	50	0	0	50	1.00
660495--660546	18	2.6	20	76	11	54	40	0	0	59	0.97
686712--686772	14	4.7	14	73	17	60	59	22	11	6	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
686702--686764	24	2.6	24	97	0	117	57	20	14	7	1.62
687028--687080	14	4.1	14	74	18	60	54	16	13	15	1.71
687028--687093	24	2.7	24	85	4	96	53	16	13	16	1.74
687858--687892	2	17.5	2	100	0	70	0	51	0	48	1.00
690565--690608	21	2.1	21	100	0	88	43	13	22	20	1.87
701732--701889	21	7.8	20	72	7	86	38	25	17	18	1.92
701856--702113	20	12.9	20	84	2	284	38	24	17	18	1.92
701875--702113	101	2.4	101	83	7	274	38	25	17	19	1.92
701856--702125	40	6.8	40	88	3	321	39	24	16	19	1.92
705191--705439	33	7.2	34	78	14	242	46	18	21	14	1.84
705205--705445	19	13.7	19	78	17	279	45	17	21	14	1.85
705233--705407	52	3.2	52	94	4	287	46	16	22	14	1.83
705191--705445	52	4.9	51	78	15	197	45	18	21	14	1.85
705435--705551	53	2.2	53	96	1	218	13	24	17	43	1.86
705454--705551	19	5.4	19	84	13	143	14	22	17	45	1.84
705656--705691	13	2.6	14	86	4	56	47	22	0	30	1.52
707582--707646	18	3.4	19	83	10	80	44	27	16	10	1.81
707582--707679	19	5.4	19	75	15	91	44	25	18	11	1.82
707637--707691	14	3.6	14	76	21	56	47	21	20	10	1.80
707618--707696	33	2.4	33	95	0	140	45	21	21	11	1.83
707692--707820	19	7.3	19	75	17	125	8	17	28	45	1.77
707692--707783	33	2.8	33	93	3	150	7	18	28	45	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
707867--708327	91	5.1	93	93	5	807	45	19	12	22	1.83
707866--708327	181	2.5	182	94	4	808	46	19	12	22	1.83
710012--710094	19	4.7	19	78	15	97	46	21	21	9	1.79
709990--710094	52	2.0	51	94	1	183	47	20	22	9	1.78
710100--710169	33	2.1	33	94	0	122	8	22	20	48	1.76
710145--710222	41	1.9	41	97	0	147	12	25	16	44	1.83
710146--710221	21	3.7	21	83	3	109	11	25	17	46	1.82
710299--710369	33	2.2	33	92	0	115	47	18	22	11	1.80
710748--710856	39	2.8	39	88	5	157	20	18	27	33	1.96
710748--710895	79	1.9	80	88	1	226	18	18	27	36	1.94
710745--710897	40	3.8	40	81	4	184	17	18	26	37	1.93
710746--710897	20	7.7	20	81	7	166	17	18	26	36	1.93
710884--710966	21	4.0	21	73	6	78	25	16	24	33	1.96
710864--710962	42	2.4	43	77	11	100	21	18	23	37	1.94
713632--713690	29	2.0	29	100	0	118	49	13	13	23	1.78
718316--718373	29	2.0	28	90	9	91	46	12	17	24	1.81
723431--723487	30	1.9	30	96	0	105	19	17	8	54	1.68
724326--724359	15	2.4	14	90	9	52	41	0	0	58	0.98
730745--730786	20	2.0	21	90	4	68	35	14	9	40	1.78
747573--747620	2	24.0	2	100	0	96	50	0	50	0	1.00
749038--749098	15	3.9	15	71	12	50	34	0	4	60	1.18
749025--749131	33	3.2	32	80	9	90	35	0	3	60	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
750856--750903	21	2.3	21	88	0	69	25	41	12	20	1.87
750909--751035	21	6.0	21	85	5	134	19	33	22	24	1.97
750913--751035	63	2.0	63	90	0	192	19	33	21	25	1.97
751592--751616	6	4.2	6	100	0	50	84	0	0	16	0.63
751564--751648	40	2.1	40	91	0	134	61	4	2	31	1.29
751564--751674	34	2.9	39	75	15	115	57	5	3	33	1.39
752070--752419	128	2.7	128	94	0	621	34	21	23	20	1.97
752500--752540	8	5.2	8	82	5	57	36	29	0	34	1.58
754804--754850	23	2.0	23	84	12	60	31	2	8	57	1.41
758040--758103	31	2.2	28	73	19	69	23	18	26	31	1.98
763506--763617	60	1.9	59	83	1	143	29	22	19	28	1.98
765136--765243	45	2.4	46	89	4	157	30	20	20	28	1.97
769579--769629	21	2.4	21	100	0	102	29	19	19	31	1.97
769745--769802	20	2.6	22	89	10	84	31	20	22	25	1.98
770693--770757	31	2.1	31	88	5	96	23	20	21	35	1.96
770707--770769	31	2.1	31	87	3	92	23	20	23	31	1.98
773996--774053	20	2.9	20	100	0	116	31	20	24	24	1.98
774347--774389	16	2.5	18	81	7	54	37	6	13	41	1.72
775335--775413	2	40.0	2	97	2	151	49	0	0	50	1.00
778168--778308	64	2.2	63	81	9	162	32	18	23	25	1.97
778296--778373	20	3.7	20	93	6	120	30	20	23	25	1.98
779249--779370	31	4.0	31	79	10	101	17	17	26	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
779282--779367	30	2.9	30	84	1	111	15	19	27	37	1.92
784821--784854	10	3.5	10	84	8	52	8	2	26	61	1.40
785057--785164	45	2.4	46	85	4	139	31	17	20	30	1.96
785105--785250	65	2.2	64	83	7	179	26	17	23	32	1.97
790984--791021	17	2.3	17	86	4	51	68	5	0	26	1.11
794311--794602	141	2.1	140	86	7	404	47	14	7	29	1.72
794346--794624	141	2.0	135	88	4	414	46	15	8	30	1.74
797610--797634	13	1.9	13	100	0	50	16	0	60	24	1.36
809550--809594	21	2.1	21	87	0	63	22	24	20	33	1.97
809603--809696	20	4.7	20	93	0	161	27	27	21	23	1.99
809584--809696	40	2.8	40	84	5	122	29	25	21	23	1.99
809858--809919	22	2.8	22	77	0	70	24	40	16	19	1.91
810302--810387	20	4.4	19	79	7	75	16	17	23	43	1.88
810312--810384	20	3.7	19	81	5	83	16	19	23	41	1.90
812266--812333	20	3.4	20	89	0	100	38	26	17	17	1.92
812882--812982	21	4.8	20	69	12	69	21	34	18	24	1.96
814628--814724	34	2.9	34	88	0	140	21	16	22	39	1.92
814559--814690	54	2.5	53	83	1	165	21	19	23	34	1.96
814608--814752	20	7.8	20	70	20	91	24	17	22	35	1.95
817220--817273	24	2.2	24	93	0	90	40	20	18	20	1.91
817220--817287	24	2.8	24	84	0	64	38	20	17	23	1.93
817864--818109	60	4.0	62	78	9	161	37	24	17	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
817846--818111	80	3.3	80	83	6	272	37	24	17	20	1.94
817907--818116	20	10.4	20	84	7	246	37	24	17	20	1.94
817907--818116	40	5.2	40	90	5	282	37	24	17	20	1.94
821104--821239	19	7.7	19	79	15	166	44	17	22	15	1.86
821094--821239	52	2.8	52	97	0	274	44	17	23	14	1.86
821094--821233	33	4.1	33	71	18	124	45	17	22	13	1.84
821248--821345	19	5.4	19	82	13	134	15	22	16	45	1.84
821229--821345	53	2.2	53	95	1	209	14	24	17	43	1.86
821450--821486	14	2.6	14	91	0	65	45	21	0	32	1.52
822927--823013	45	1.9	45	85	0	120	21	16	41	20	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19