genome.fa.s9586.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009586.1 Hibiscus syriacus cultivar Beakdansim tig00116964_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3773412

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  5  of  19  ( 2170 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
823266--823347	19	4.6	19	79	14	102	8	18	25	47	1.76
823411--823878	93	5.1	93	98	0	904	46	19	12	22	1.83
823637--823669	17	1.9	17	88	11	50	45	15	15	24	1.84
823411--823878	185	2.5	186	98	0	904	46	19	12	22	1.83
825572--825677	19	6.1	19	74	20	115	46	19	23	10	1.81
825580--825672	33	2.8	33	100	0	186	46	21	22	9	1.80
825599--825655	14	3.7	14	75	20	60	43	22	24	8	1.81
825673--825731	19	3.4	18	73	22	54	8	18	25	47	1.77
825689--825745	14	3.7	14	77	20	60	8	22	22	45	1.80
825673--825753	33	2.5	33	93	0	135	8	20	22	48	1.77
825729--825806	41	1.9	41	97	0	147	12	25	16	44	1.83
825730--825805	21	3.7	21	83	3	109	11	25	17	46	1.82
825885--825955	33	2.2	33	92	0	115	47	18	22	11	1.80
826135--826189	22	2.5	22	81	0	74	20	16	40	23	1.91
826335--826489	40	3.8	40	83	4	195	17	18	26	38	1.92
826336--826489	20	7.7	20	82	7	177	17	18	26	37	1.93
826476--826558	21	4.0	21	73	6	78	25	16	24	33	1.96
826456--826554	42	2.4	43	77	11	100	21	18	23	37	1.94
827158--827225	20	3.4	20	87	0	73	27	16	25	30	1.96
827194--827264	20	3.5	20	81	9	83	25	19	18	36	1.94
835738--835796	3	19.7	3	100	0	118	67	0	0	32	0.91
840496--840594	3	33.7	3	89	4	157	33	1	0	65	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
841062--841103	10	4.3	10	75	6	50	66	9	23	0	1.21
841074--841114	19	2.2	19	86	0	55	68	9	19	2	1.29
842017--842059	21	2.0	22	86	4	61	39	2	2	55	1.25
842753--842803	18	2.9	17	72	18	50	25	0	1	72	0.95
842794--842830	15	2.7	15	88	12	53	24	5	8	62	1.44
853423--853500	5	15.6	5	73	21	58	80	0	16	2	0.82
853421--853500	19	4.1	19	83	12	108	81	0	16	2	0.80
853418--853500	32	2.5	33	81	11	100	80	0	16	2	0.81
853418--853500	39	2.2	38	86	6	114	80	0	16	2	0.81
853422--853500	6	12.5	6	72	19	63	81	0	16	2	0.81
854556--854811	52	4.9	52	93	1	442	24	15	23	37	1.93
855479--855544	20	3.3	20	70	16	64	42	10	24	22	1.85
855438--856091	114	5.7	115	91	6	1003	37	14	20	27	1.92
855438--856073	118	5.5	117	91	6	1000	36	14	20	27	1.92
856227--856318	3	31.7	3	84	10	120	33	1	0	65	1.00
856782--856823	10	4.3	10	75	6	50	66	9	23	0	1.21
856794--856834	19	2.2	19	86	0	55	68	9	19	2	1.29
857730--857772	21	2.0	22	86	4	61	39	2	2	55	1.25
864796--864876	20	3.9	21	78	9	76	24	35	24	14	1.94
870245--870385	63	2.2	64	86	3	187	21	22	24	31	1.98
871918--872009	23	4.1	22	74	16	91	47	1	28	22	1.58
873278--873304	8	3.4	8	100	0	54	22	0	0	77	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
882024--882060	3	12.0	3	94	5	65	35	0	0	64	0.94
882113--882151	16	2.4	17	83	12	55	33	46	20	0	1.51
882257--882298	16	2.7	16	92	3	68	30	30	19	19	1.96
883554--883593	18	2.2	19	90	4	64	32	0	0	67	0.91
883538--883588	20	2.5	20	81	6	59	33	0	3	62	1.13
886563--886598	7	5.1	7	87	12	56	13	16	11	58	1.63
891912--891980	23	3.0	23	85	4	95	27	26	26	20	1.99
891982--892175	103	1.9	103	93	0	334	36	22	13	27	1.92
892993--893038	20	2.3	20	100	0	92	21	30	0	47	1.51
893553--893608	20	2.7	21	91	5	87	19	25	25	30	1.98
897161--897229	23	3.0	23	84	0	84	28	26	24	20	1.99
898223--898268	20	2.3	20	100	0	92	21	30	0	47	1.51
898775--898817	22	2.0	22	85	0	59	18	25	27	27	1.98
900043--900204	54	3.0	54	87	0	234	37	13	22	26	1.91
900574--900630	22	2.6	21	86	5	69	40	14	10	35	1.80
901293--901727	45	9.7	45	91	0	690	25	21	19	33	1.97
901552--901667	20	5.3	20	64	22	63	22	23	20	33	1.97
901778--902188	39	10.6	39	90	1	605	43	11	22	22	1.86
902369--902428	3	20.0	3	79	6	68	41	0	0	58	0.98
903788--904056	145	1.9	145	83	4	359	40	4	6	48	1.50
911086--911153	12	6.0	12	78	13	54	42	19	17	20	1.89
911080--911150	22	3.3	22	80	2	81	46	16	15	21	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
911930--912083	31	5.0	31	74	12	86	32	18	18	31	1.95
911957--912083	31	4.1	31	76	9	107	33	16	18	32	1.93
914340--914387	23	2.1	23	88	0	69	35	6	18	39	1.76
918947--918989	2	21.5	2	100	0	86	48	0	0	51	1.00
919752--919845	39	2.4	39	84	7	111	25	17	23	34	1.96
921587--921795	105	2.0	103	97	1	391	33	20	22	24	1.97
921767--922000	43	5.5	42	80	5	202	29	17	25	27	1.98
921982--922097	35	2.9	40	77	18	125	24	19	22	33	1.97
922004--922075	35	2.1	35	100	0	144	22	22	20	34	1.97
922471--922527	21	2.7	21	100	0	114	0	36	22	40	1.55
922471--922553	42	2.0	42	85	0	112	1	37	20	40	1.60
922535--922589	20	2.7	21	85	2	76	0	41	20	38	1.52
926150--926240	46	2.0	46	95	0	164	50	15	23	10	1.75
927058--927214	41	3.8	41	76	9	124	28	21	20	29	1.98
927143--927251	40	2.7	39	79	14	123	33	23	20	22	1.97
927158--927257	40	2.5	41	85	3	139	38	23	17	22	1.93
927496--927682	57	3.3	57	98	0	358	50	13	5	29	1.65
928686--928793	41	2.6	41	83	12	132	26	21	18	33	1.96
930349--930424	3	26.0	3	73	17	54	67	0	30	2	1.05
930350--930424	11	6.5	11	73	15	62	68	0	29	2	1.04
930639--930692	21	2.8	18	79	15	63	46	1	3	48	1.30
939682--939718	19	1.9	19	100	0	74	16	27	32	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
940328--940379	18	2.6	19	76	14	52	25	21	28	25	1.99
941726--941750	13	1.9	13	100	0	50	52	0	0	48	1.00
941849--941904	22	2.6	22	80	8	55	55	3	1	39	1.28
941882--941969	20	4.7	20	79	16	116	52	4	3	39	1.39
941882--942014	34	3.8	34	71	21	121	51	6	3	39	1.42
941870--941921	17	2.9	17	74	17	52	50	3	1	44	1.31
944784--944853	29	2.4	29	92	4	115	62	8	2	25	1.38
948279--948315	18	2.1	18	100	0	74	16	21	21	40	1.91
958249--958274	10	2.6	10	100	0	52	7	11	34	46	1.69
967233--967284	22	2.4	22	90	0	86	17	25	30	26	1.97
967269--967303	18	1.9	18	88	0	52	17	17	34	31	1.93
973582--973660	24	3.5	24	73	16	96	24	25	30	20	1.98
973562--973715	43	3.7	43	89	8	225	25	22	30	21	1.99
974225--974277	22	2.4	23	93	6	92	13	22	32	32	1.92
975277--975400	45	2.6	46	83	10	144	29	0	16	54	1.42
975284--975363	21	3.7	21	76	12	72	30	0	16	53	1.43
975303--975372	21	3.2	21	78	8	77	25	0	18	55	1.43
975349--975411	28	2.2	30	91	5	103	28	0	14	57	1.38
975862--975891	15	1.9	16	93	6	53	43	0	10	46	1.37
979224--979340	60	2.0	60	98	0	225	42	0	11	46	1.39
979465--979744	11	23.4	11	69	21	117	43	1	10	44	1.48
979559--979644	26	3.3	26	90	7	140	44	2	9	44	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
979559--979650	14	7.1	14	74	20	85	44	2	9	43	1.49
979635--979713	21	3.4	22	79	12	70	41	1	8	48	1.42
979673--979702	14	2.1	15	93	6	53	40	0	6	53	1.27
979919--979967	26	2.0	25	92	8	82	36	8	10	44	1.68
980021--980147	14	10.0	13	75	19	126	46	1	10	41	1.47
980032--980147	26	4.6	26	87	9	161	46	1	10	41	1.48
980564--980605	21	2.0	21	100	0	84	19	23	38	19	1.93
982229--982309	29	2.8	29	92	3	137	45	16	20	17	1.85
982988--983094	53	2.0	53	100	0	214	34	16	16	31	1.92
988247--988391	64	2.2	65	82	10	172	35	19	17	27	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19