genome.fa.s9586.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009586.1 Hibiscus syriacus cultivar Beakdansim tig00116964_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3773412

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  15  of  19  ( 2170 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2919678--2919753	36	2.1	35	83	13	93	5	25	15	53	1.62
2920715--2920841	31	4.2	30	86	6	139	28	25	7	37	1.84
2920736--2920841	31	3.5	30	87	5	149	28	25	8	37	1.85
2921432--2921864	224	2.0	217	92	5	717	45	7	7	39	1.61
2921928--2921973	20	2.3	19	89	10	74	54	10	17	17	1.70
2924411--2924476	33	2.0	33	87	0	96	28	1	45	24	1.62
2926255--2926298	19	2.4	19	92	3	72	31	2	9	56	1.43
2926381--2926994	199	3.1	199	97	0	1138	37	15	14	32	1.88
2927388--2928058	184	3.7	184	96	0	1236	35	14	15	34	1.88
2930616--2930679	23	2.8	23	87	0	92	35	6	20	37	1.78
2930616--2930688	23	3.2	23	82	7	85	34	5	20	39	1.76
2931043--2931105	23	2.7	23	90	0	90	36	6	19	38	1.77
2931043--2931115	23	3.2	23	86	3	85	35	5	19	39	1.75
2930518--2931535	430	2.4	427	98	0	1975	40	8	13	38	1.74
2931473--2931537	23	2.8	23	90	0	94	35	7	18	38	1.80
2931741--2931777	18	2.1	18	89	0	56	32	5	10	51	1.60
2944578--2944617	21	1.9	21	85	10	55	35	10	2	52	1.48
2948531--2948592	13	4.6	13	69	15	54	58	3	0	38	1.15
2949081--2949116	18	2.0	18	94	0	63	47	0	22	30	1.52
2953842--2953889	21	2.4	19	80	12	60	52	4	6	37	1.46
2957040--2957124	35	2.5	33	78	14	91	25	8	9	56	1.59
2967515--2967574	31	1.9	31	89	0	93	40	5	10	45	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2967588--2968381	32	28.7	32	69	27	458	52	12	0	34	1.39
2967635--2967756	26	4.6	26	68	22	92	53	16	0	30	1.43
2967780--2967833	14	3.6	14	72	18	54	57	5	0	37	1.22
2967710--2968381	54	12.8	54	72	16	424	52	12	0	34	1.39
2967822--2967886	22	3.0	22	97	0	121	50	10	0	38	1.37
2967898--2967940	22	2.0	22	95	0	77	51	11	0	37	1.39
2967900--2967948	22	2.2	22	85	3	62	55	12	0	32	1.37
2967956--2968029	22	3.2	22	70	16	60	55	17	0	27	1.42
2968150--2968192	22	2.0	22	100	0	86	51	13	0	34	1.42
2968152--2968200	22	2.2	22	88	3	71	55	14	0	30	1.40
2968238--2968312	22	3.2	22	75	14	69	54	16	0	29	1.42
2968316--2968416	22	4.5	22	70	7	85	51	8	0	39	1.33
2968361--2968493	15	8.5	15	81	11	160	51	2	0	45	1.19
2968307--2968463	69	2.3	67	87	7	212	50	5	0	42	1.30
2968229--2968493	47	5.4	49	75	14	167	51	7	0	40	1.34
2969355--2969401	23	2.1	22	84	11	60	34	6	0	59	1.23
2975315--2975401	20	4.3	20	89	0	120	26	27	21	24	1.99
2975574--2975637	22	3.0	22	79	4	78	25	40	12	21	1.88
2975994--2976038	19	2.4	19	92	0	72	13	13	24	48	1.78
2976044--2976111	20	3.4	20	81	4	66	17	16	23	42	1.88
2978022--2978069	20	2.4	20	96	0	87	37	25	20	16	1.93
2978112--2978200	20	4.4	20	91	2	117	19	17	25	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2979776--2979815	5	8.2	5	86	5	55	2	20	55	22	1.56
2979787--2979813	14	1.9	14	100	0	54	3	22	51	22	1.63
2979861--2979899	21	1.9	21	89	5	62	35	20	23	20	1.96
2982350--2982409	14	4.1	14	76	6	57	36	0	15	48	1.45
2982524--2982561	20	1.9	20	88	0	58	52	18	18	10	1.73
2982555--2982812	20	13.2	20	77	6	262	26	20	22	31	1.98
2982590--2982769	94	1.9	94	86	2	254	26	20	21	31	1.98
2982570--2982789	114	1.9	114	89	0	341	25	20	21	32	1.98
2984246--2984285	14	2.9	14	80	0	53	30	0	17	52	1.45
2984199--2984335	66	2.2	66	83	9	169	29	1	16	51	1.53
2985386--2985435	25	2.0	25	92	0	82	44	20	8	28	1.79
2985544--2985605	20	3.1	20	88	0	97	33	25	19	20	1.96
2985922--2985950	12	2.4	12	100	0	58	17	6	24	51	1.69
2989030--2989079	24	2.1	24	85	7	66	28	2	12	58	1.45
2989556--2989588	16	2.1	16	94	0	57	12	9	0	78	0.95
2992251--2992293	14	3.0	15	83	10	54	16	0	6	76	0.99
2994615--2994664	24	2.1	24	85	7	66	28	2	12	58	1.45
2996306--2996376	20	3.5	20	81	7	81	25	21	22	30	1.98
3005738--3006060	107	3.0	108	88	1	470	23	19	14	42	1.88
3007695--3007764	35	2.0	35	100	0	140	25	28	14	31	1.95
3011369--3011456	43	2.0	43	97	0	167	29	12	15	42	1.84
3014165--3014297	3	44.0	3	90	1	212	35	0	2	62	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3016448--3016498	24	2.1	25	82	10	70	33	1	1	62	1.17
3021133--3021166	13	2.6	14	86	13	54	82	0	17	0	0.67
3023435--3023890	81	5.5	81	92	4	707	26	14	21	37	1.92
3026519--3026574	23	2.5	23	82	2	78	33	8	12	44	1.73
3027249--3027965	77	9.4	76	96	1	1303	21	21	21	34	1.97
3027249--3027965	153	4.7	153	97	1	1334	21	21	21	34	1.97
3027249--3027965	305	2.4	305	97	1	1357	21	21	21	34	1.97
3028097--3028245	3	49.0	3	89	2	226	35	0	2	62	1.07
3032303--3032332	15	2.0	15	100	0	60	33	0	20	46	1.51
3033367--3033413	3	15.7	3	100	0	94	68	0	0	31	0.90
3034239--3034286	22	2.2	22	85	7	62	58	10	14	16	1.63
3034237--3034288	23	2.3	21	78	12	59	59	11	13	15	1.61
3034634--3034722	28	2.9	29	72	18	83	50	11	1	37	1.46
3044819--3044863	23	2.0	23	90	0	72	26	31	22	20	1.98
3049664--3050107	149	3.0	150	89	3	652	27	14	21	36	1.93
3053443--3053503	28	2.2	27	94	5	113	49	13	11	26	1.75
3053486--3053610	64	1.9	65	87	6	182	36	16	20	27	1.94
3054940--3055385	147	3.0	147	91	2	686	27	14	21	36	1.92
3055583--3055656	31	2.4	31	81	6	78	50	1	16	32	1.54
3057881--3057979	50	2.0	50	84	4	128	23	27	30	19	1.98
3057895--3058003	50	2.2	50	83	3	139	22	27	33	16	1.95
3059406--3059479	30	2.4	31	80	11	89	40	6	0	52	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3060751--3060841	45	2.0	46	95	2	166	36	17	4	41	1.70
3072077--3072107	2	15.5	2	100	0	62	51	0	0	48	1.00
3072376--3072488	25	4.5	24	69	23	65	64	0	5	29	1.21
3073702--3073732	3	10.3	3	100	0	62	64	0	0	35	0.94
3073916--3074370	45	10.1	45	93	0	732	32	21	24	21	1.98
3074313--3074514	76	2.7	76	90	0	296	31	19	21	27	1.97
3074378--3074686	119	2.6	121	87	4	462	32	20	21	25	1.97
3074584--3074867	45	6.3	45	93	0	460	32	21	23	21	1.98
3074584--3074867	136	2.1	135	93	0	478	32	21	23	21	1.98
3074814--3075011	76	2.6	76	89	0	297	32	21	21	25	1.98
3074088--3075185	497	2.2	498	93	0	1869	32	20	23	23	1.98
3074875--3075263	121	3.2	121	88	1	553	32	20	21	25	1.97
3074961--3075064	45	2.3	45	81	0	127	29	19	24	26	1.98
3074765--3075392	197	3.2	197	76	14	658	33	20	21	24	1.97
3074998--3075140	76	1.9	74	84	2	187	31	20	23	24	1.98
3075072--3075185	45	2.5	45	81	2	120	32	19	21	26	1.97
3075121--3075393	76	3.6	76	89	2	406	36	19	20	23	1.95
3076074--3076152	22	3.6	22	93	3	124	36	13	13	35	1.85
3079582--3079651	18	4.1	17	75	15	65	1	20	0	78	0.83
3079576--3079613	12	2.9	14	88	11	62	0	21	0	78	0.74
3079576--3079651	8	8.6	9	72	22	63	1	19	0	78	0.81
3079590--3079651	18	3.6	17	83	10	74	1	17	0	80	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3079576--3079609	6	5.3	6	86	13	50	0	20	0	79	0.73
3079596--3079652	9	6.3	9	80	8	62	1	17	0	80	0.79
3079602--3079652	18	2.6	20	90	9	79	1	17	0	80	0.81
3082118--3082189	14	5.2	14	74	14	60	62	9	9	18	1.52
3082139--3082222	26	3.2	26	78	8	89	59	9	13	17	1.60
3082469--3082520	21	2.5	21	100	0	104	13	30	7	48	1.71
3085265--3085297	2	16.5	2	100	0	66	48	0	0	51	1.00
3085517--3085569	27	2.0	27	85	7	72	60	0	0	39	0.97
3087281--3087341	23	2.7	23	87	5	79	29	24	24	21	1.99
3087559--3087627	30	2.3	30	89	0	102	33	21	4	40	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19