genome.fa.s9586.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009586.1 Hibiscus syriacus cultivar Beakdansim tig00116964_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3773412

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  2  of  19  ( 2170 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
220598--220985	184	2.1	184	89	2	602	46	8	3	42	1.49
226815--226867	21	2.5	21	81	6	63	20	26	20	32	1.98
226860--226950	20	4.5	20	81	2	110	40	19	18	20	1.91
227576--227645	20	3.5	20	88	0	77	17	17	24	41	1.89
227593--227647	20	2.8	20	91	0	83	10	16	23	49	1.77
229526--229629	20	5.5	20	81	13	130	38	22	20	19	1.94
229529--229650	54	2.3	54	94	0	208	40	21	21	17	1.92
229676--229814	20	7.3	20	81	12	134	16	19	23	41	1.90
230300--230341	21	2.2	19	87	12	59	23	33	19	23	1.97
230323--230405	42	2.0	42	83	4	105	22	37	19	20	1.94
231748--231783	14	2.6	14	90	0	54	30	0	22	47	1.52
231939--232007	33	2.1	34	83	2	86	17	23	17	42	1.89
231992--232123	20	6.6	20	91	1	187	18	20	25	35	1.95
232814--232920	20	5.3	20	84	4	144	21	20	20	37	1.95
232793--232925	40	3.3	38	74	20	119	23	18	21	36	1.95
232814--232942	41	3.2	41	82	3	154	24	19	20	34	1.96
232824--232961	61	2.3	61	82	7	172	25	20	22	31	1.98
233692--233730	18	2.1	19	85	4	53	30	0	2	66	1.05
234843--234898	19	2.9	19	91	0	94	33	28	16	21	1.95
234943--234990	21	2.3	21	77	0	60	27	20	18	33	1.96
234981--235037	20	2.8	20	75	0	51	33	22	22	21	1.97
235025--235079	21	2.6	21	94	0	92	38	21	18	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
234982--235120	62	2.3	62	84	3	183	35	21	18	23	1.95
235649--235721	20	3.7	20	77	1	67	20	17	20	41	1.91
237628--237735	20	5.8	20	69	14	70	44	19	18	17	1.87
237731--237773	19	2.3	19	84	8	52	16	16	23	44	1.86
237736--237774	19	2.0	20	90	5	62	12	15	20	51	1.76
237767--237848	40	2.2	37	78	16	89	19	17	19	43	1.88
237779--237847	20	3.5	20	81	0	84	20	17	20	42	1.90
238350--238410	21	2.9	21	75	0	59	21	39	19	19	1.93
238297--238413	42	2.8	41	76	6	119	22	36	17	23	1.94
239969--240018	20	2.5	20	83	0	64	34	20	18	28	1.95
240015--240073	20	3.0	20	87	9	93	44	27	20	8	1.80
239963--240304	40	8.8	39	71	7	187	32	21	19	25	1.97
240116--240444	20	16.9	20	76	5	242	31	20	20	27	1.98
239929--240206	153	1.8	153	92	0	466	32	22	19	26	1.97
240112--240402	119	2.4	119	90	0	438	31	20	20	27	1.98
240116--240394	99	2.8	99	81	5	262	32	20	20	26	1.97
240415--240697	140	2.0	140	97	0	530	43	15	13	27	1.83
240755--240789	18	1.9	18	94	0	61	17	2	25	54	1.57
243058--243104	24	2.0	24	95	0	85	36	21	21	21	1.96
243930--244008	20	4.0	20	78	6	88	26	20	24	29	1.99
244023--244068	19	2.4	19	85	3	56	23	15	30	30	1.95
244034--244070	19	1.9	19	94	0	65	21	16	29	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
244673--244787	50	2.3	50	81	0	131	15	33	27	22	1.95
244918--244956	20	2.0	19	90	5	60	33	23	0	43	1.54
244999--245039	18	2.3	18	91	4	66	29	4	2	63	1.28
245101--245433	111	3.0	111	95	0	612	36	7	10	45	1.67
246940--246979	18	2.2	18	95	0	71	22	32	22	22	1.98
247318--247367	3	16.7	3	82	0	55	32	24	36	8	1.84
247318--247367	15	3.1	15	84	15	73	32	24	36	8	1.84
247318--247364	18	2.6	18	89	0	76	31	23	36	8	1.85
247588--247672	35	2.5	33	78	14	91	25	8	10	55	1.62
251295--251424	51	2.6	50	83	9	142	21	28	31	18	1.97
257278--257315	20	1.9	20	100	0	76	23	21	34	21	1.97
257711--257737	13	2.1	13	100	0	54	74	0	7	18	1.05
259963--260024	23	2.7	23	92	7	101	29	20	29	20	1.98
268261--268552	83	3.5	82	74	7	203	31	14	18	36	1.90
277886--278225	173	2.0	170	97	2	639	37	17	19	26	1.93
279863--279905	11	3.7	11	84	15	52	83	0	16	0	0.64
279874--279898	10	2.5	10	100	0	50	92	0	8	0	0.40
284597--284651	22	2.5	22	87	0	83	34	14	14	36	1.87
285055--286636	115	14.0	112	88	4	2032	37	13	18	30	1.89
285055--286636	112	14.0	115	90	3	2211	37	13	18	30	1.89
285055--286636	567	2.8	567	94	1	2728	37	13	18	30	1.89
296982--297074	46	2.0	46	100	0	186	38	15	6	39	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
297571--297622	21	2.5	21	81	3	61	38	19	25	17	1.93
297611--297745	20	6.7	20	78	7	112	33	24	17	25	1.96
297608--297739	61	2.2	61	85	0	174	35	24	15	24	1.94
297913--297956	22	2.0	22	95	0	79	20	45	15	18	1.85
298082--298117	17	2.1	17	100	0	72	38	0	22	38	1.54
298223--298260	20	1.9	20	88	0	58	13	15	18	52	1.74
299580--299624	18	2.5	18	88	0	72	26	44	15	13	1.83
300429--300471	21	2.0	21	86	0	59	30	27	25	16	1.97
300451--300601	69	2.2	67	82	6	180	27	25	27	19	1.99
300905--300974	29	2.4	29	90	0	104	37	10	14	38	1.79
300990--301049	30	2.0	31	90	3	95	36	6	23	33	1.81
301269--301335	22	3.0	22	100	0	134	19	26	26	26	1.99
306606--306648	21	2.0	21	86	0	59	30	27	25	16	1.97
306628--306779	68	2.2	69	83	5	193	26	25	28	19	1.99
307083--307152	29	2.4	29	90	0	104	37	10	14	38	1.79
307168--307227	30	2.0	31	90	3	95	36	6	23	33	1.81
307447--307513	22	3.0	22	100	0	134	19	26	26	26	1.99
308468--308513	20	2.3	20	84	0	56	36	23	21	17	1.94
308479--308534	20	2.8	20	81	2	69	39	21	23	16	1.92
308523--308579	14	3.7	14	75	20	60	50	22	15	10	1.74
308507--308598	33	2.8	33	96	3	168	47	20	18	13	1.81
308507--308603	19	5.6	19	71	24	90	46	20	19	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
308610--308768	19	8.9	18	76	16	118	13	20	22	44	1.85
308615--308677	33	1.9	33	96	3	119	12	19	20	47	1.81
308599--308726	52	2.5	52	90	1	204	12	17	22	46	1.82
308711--308766	20	2.8	19	86	7	76	16	25	23	35	1.94
310608--310646	14	2.8	14	84	0	51	35	0	17	46	1.49
310744--310786	20	2.2	20	91	0	68	48	25	13	11	1.77
310783--310850	19	3.8	19	85	14	101	47	17	22	13	1.82
310888--310947	20	3.0	20	73	4	68	15	23	20	41	1.89
311157--311248	20	4.6	20	73	2	76	20	18	21	39	1.93
311233--311284	20	2.5	20	81	3	59	21	21	17	40	1.91
312044--312103	24	2.5	24	88	0	84	26	15	18	40	1.90
312279--312303	12	2.1	12	100	0	50	72	0	28	0	0.86
314622--314687	19	3.7	19	67	19	61	45	19	22	12	1.83
314595--314683	28	3.0	29	84	13	126	44	20	21	13	1.85
314676--314718	19	2.3	19	83	0	50	23	23	16	37	1.94
314832--314868	14	2.6	14	91	0	65	45	24	0	29	1.53
316226--316292	21	3.2	21	68	4	55	19	20	35	23	1.95
316566--316750	91	2.0	90	91	6	300	47	18	12	21	1.82
318464--318562	33	3.0	33	89	1	144	42	22	23	12	1.87
318501--318617	52	2.2	52	92	0	189	44	21	22	11	1.84
318447--318614	85	2.0	87	88	4	252	44	20	22	12	1.85
319150--319203	20	2.7	19	85	5	63	18	18	25	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
319150--319215	20	3.2	20	78	6	62	21	19	22	36	1.95
319219--319274	20	2.7	21	75	5	60	42	17	21	17	1.89
319294--319345	20	2.5	21	87	3	70	21	23	17	38	1.93
319254--319360	41	2.6	41	73	5	92	28	18	21	30	1.97
319335--319387	21	2.5	22	81	6	74	33	18	26	20	1.96
319435--319485	19	2.7	19	93	0	84	25	21	27	25	1.99
319910--319958	21	2.3	21	96	0	89	48	0	2	48	1.12
321194--321261	2	34.0	2	100	0	136	50	0	0	50	1.00
322252--322293	22	1.9	22	85	9	59	28	4	4	61	1.36
326508--326541	2	17.0	2	100	0	68	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19