genome.fa.s9586.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009586.1 Hibiscus syriacus cultivar Beakdansim tig00116964_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3773412

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  6  of  19  ( 2170 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
988770--988818	14	3.4	14	72	5	53	42	16	20	20	1.89
988766--988862	29	3.3	29	95	1	167	46	15	20	17	1.84
988862--988894	15	2.2	15	94	0	57	15	21	33	30	1.94
990805--990869	24	2.8	23	83	4	85	30	26	24	18	1.98
991096--991128	16	2.0	17	88	5	50	36	24	6	33	1.80
993726--993794	30	2.3	30	82	7	79	44	10	1	43	1.46
994044--994098	18	3.4	18	63	31	52	52	7	0	40	1.29
994044--994106	29	2.2	29	85	5	92	52	7	0	39	1.31
993786--994447	352	1.9	343	87	6	967	48	11	1	38	1.47
994329--994368	21	1.9	21	94	0	71	57	12	0	30	1.36
994629--994689	23	2.7	22	89	5	86	42	16	19	21	1.89
994632--994689	11	5.0	12	69	23	52	44	15	17	22	1.86
1008832--1008987	64	2.5	64	77	9	158	27	17	19	35	1.94
1021156--1021217	23	2.9	21	85	7	81	20	35	25	17	1.95
1035065--1035096	17	1.9	17	93	6	57	40	0	0	59	0.97
1038442--1038496	20	2.7	22	86	13	75	30	0	0	69	0.89
1038440--1038496	23	2.7	20	82	15	69	29	0	0	70	0.88
1038651--1038735	38	2.3	38	89	2	127	23	7	34	35	1.82
1039815--1039863	21	2.3	22	86	10	66	22	4	2	71	1.13
1043658--1043688	16	1.9	16	93	0	53	48	29	6	16	1.70
1043864--1044753	106	8.4	105	90	3	1286	32	24	18	23	1.97
1043839--1044753	318	2.9	317	91	1	1456	32	24	18	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1045281--1045324	18	2.5	17	85	3	52	36	0	0	63	0.95
1045484--1045568	38	2.3	38	89	2	127	23	7	34	35	1.82
1046643--1046691	21	2.3	22	86	10	66	24	2	2	71	1.07
1053236--1053264	15	1.9	15	100	0	58	58	13	27	0	1.36
1057794--1057832	17	2.4	17	95	4	71	43	0	5	51	1.24
1065319--1065386	24	2.9	23	89	4	100	19	22	25	33	1.97
1066611--1066655	18	2.5	18	100	0	90	35	0	17	46	1.49
1070885--1070924	21	1.9	21	90	10	64	12	30	35	22	1.91
1071972--1072065	23	4.0	23	76	14	84	17	21	26	35	1.95
1072776--1072817	22	2.0	22	90	4	68	16	23	35	23	1.95
1073916--1073970	12	4.2	12	78	15	56	54	7	0	38	1.28
1074285--1074490	111	1.9	111	81	4	254	27	14	28	29	1.95
1074501--1074711	66	3.2	63	82	7	226	37	14	22	25	1.92
1079004--1079036	16	2.0	17	88	5	50	57	3	6	33	1.38
1079440--1079488	15	2.9	17	82	8	57	67	4	4	24	1.26
1082519--1082576	21	2.8	21	97	0	107	29	24	29	17	1.97
1082711--1082863	75	2.0	75	100	0	306	33	12	18	35	1.89
1083016--1083079	29	2.1	31	82	5	78	40	4	23	31	1.75
1083268--1083338	24	2.9	24	93	2	115	23	28	21	26	1.99
1083271--1083350	24	3.3	23	86	8	106	22	30	22	25	1.99
1084505--1084606	3	34.7	3	94	3	181	64	0	0	35	0.94
1089856--1089913	25	2.3	27	77	19	72	63	1	0	34	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1091063--1091135	25	3.2	21	70	22	58	43	0	2	53	1.15
1091848--1091888	18	2.3	18	100	0	82	14	7	9	68	1.39
1095079--1095145	34	2.0	34	87	0	98	35	1	11	50	1.48
1095536--1095592	2	30.0	2	86	10	84	49	0	0	50	1.00
1095754--1095793	19	2.0	20	90	4	64	37	0	5	57	1.21
1096075--1096168	2	49.0	2	91	8	160	50	0	0	50	1.00
1098329--1098366	15	2.6	15	91	4	60	10	15	63	10	1.52
1103804--1103852	14	3.4	14	72	5	53	42	16	20	20	1.89
1103800--1103909	29	3.8	29	93	2	186	45	15	20	18	1.85
1106847--1106882	12	3.0	12	91	0	63	36	25	5	33	1.79
1107241--1107369	69	1.9	69	88	6	199	26	17	18	37	1.93
1109137--1109162	13	2.0	13	100	0	52	38	23	15	23	1.92
1113611--1113643	15	2.2	15	100	0	66	33	33	18	15	1.92
1114156--1114286	61	2.2	59	81	10	156	25	19	21	34	1.96
1114193--1114316	61	2.0	61	84	6	162	26	17	20	35	1.95
1118471--1118567	29	3.3	28	90	7	140	46	14	19	19	1.84
1121128--1121177	24	2.1	24	85	7	66	22	2	16	60	1.46
1127968--1128041	20	3.2	24	70	18	75	14	16	0	68	1.20
1131282--1131331	24	2.1	24	85	7	66	22	2	16	60	1.46
1133067--1133327	139	1.9	139	89	0	405	36	16	22	25	1.94
1133310--1133387	2	39.0	2	100	0	156	50	0	50	0	1.00
1133378--1133636	133	1.9	133	93	0	446	36	16	20	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1135945--1136053	52	2.1	53	98	1	211	23	11	28	36	1.89
1144880--1144995	60	1.9	60	82	6	146	40	15	13	30	1.86
1145938--1146516	54	10.8	54	80	3	578	25	26	25	23	2.00
1145938--1146640	107	6.7	108	77	6	618	25	26	25	22	2.00
1149194--1149574	190	2.0	191	98	1	739	39	18	9	32	1.83
1150300--1150403	52	2.0	51	98	1	199	18	35	11	34	1.87
1150658--1150687	2	15.0	2	100	0	60	50	0	0	50	1.00
1150687--1150723	2	19.0	2	94	5	67	48	0	51	0	1.00
1150690--1150723	17	2.0	17	100	0	68	47	0	52	0	1.00
1151539--1151604	25	2.4	27	75	14	64	68	1	3	27	1.13
1151545--1151596	25	2.0	25	85	3	68	73	0	3	23	1.00
1154525--1154592	28	2.5	28	80	7	77	47	1	2	48	1.26
1161295--1161339	21	2.1	21	83	0	54	37	4	2	55	1.32
1163038--1163105	30	2.3	30	100	0	136	33	26	7	32	1.84
1175096--1175147	21	2.5	21	81	3	61	38	19	25	17	1.93
1175178--1175230	20	2.7	20	93	0	88	24	28	20	26	1.99
1175746--1175826	19	4.5	19	76	16	82	48	24	16	11	1.78
1175822--1176006	19	10.1	19	75	14	165	11	21	22	44	1.85
1175822--1176006	33	5.1	38	78	12	165	11	21	22	44	1.85
1175947--1176006	20	3.0	20	75	18	61	13	23	18	45	1.84
1178042--1178108	21	3.2	21	68	6	55	23	34	20	20	1.97
1177987--1178078	42	2.2	42	80	3	105	21	36	16	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1179406--1179441	14	2.6	14	95	0	63	30	0	25	44	1.54
1179548--1179600	20	2.7	20	91	2	81	47	18	20	13	1.82
1179606--1179756	19	8.7	19	63	21	71	15	22	19	41	1.90
1179610--1179736	33	3.9	32	85	8	184	15	22	18	42	1.89
1179603--1179735	66	2.0	66	95	0	239	17	22	18	41	1.90
1182023--1182047	12	2.1	12	100	0	50	0	28	0	72	0.86
1182234--1182280	24	2.0	24	91	0	76	34	17	19	29	1.94
1182238--1182289	24	2.2	24	82	0	59	36	19	17	26	1.94
1183333--1183390	20	2.9	20	89	0	89	37	20	22	18	1.94
1183414--1183467	14	3.5	14	77	22	63	11	20	20	48	1.80
1183396--1183466	33	2.2	33	84	0	88	19	19	21	39	1.93
1183409--1183486	33	2.4	33	91	0	120	12	23	21	42	1.87
1185472--1185538	19	3.5	19	81	4	80	37	22	23	16	1.94
1185453--1185570	20	6.4	19	74	13	86	41	23	20	14	1.89
1185527--1185584	14	3.9	14	77	16	62	48	24	17	10	1.78
1185511--1185589	32	2.4	33	93	2	133	46	22	18	11	1.81
1185618--1185675	14	3.9	14	81	16	71	10	17	22	50	1.76
1185601--1185691	32	2.8	33	93	3	157	12	18	20	48	1.80
1185676--1185730	20	2.8	19	83	8	65	16	23	23	36	1.94
1186212--1186256	18	2.5	18	88	0	72	13	15	44	26	1.83
1187574--1187611	20	1.9	20	88	0	58	50	21	15	13	1.78
1187875--1187918	22	2.0	22	95	0	79	18	15	45	20	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1188106--1188158	20	2.7	20	93	0	88	24	18	28	28	1.98
1188128--1188262	41	3.3	41	81	4	130	20	21	20	38	1.94
1188194--1188264	21	3.4	21	80	3	99	15	23	18	42	1.88
1188208--1188281	20	3.7	20	80	3	94	17	22	18	40	1.91
1188192--1188281	41	2.2	41	100	0	180	17	24	17	40	1.91
1192448--1192482	17	2.1	17	89	10	54	11	5	5	77	1.12
1193453--1193494	21	2.0	20	86	4	57	38	14	7	40	1.73
1200310--1200381	22	3.3	22	88	5	110	27	20	25	26	1.99
1200318--1200380	21	3.0	21	92	2	99	23	23	26	25	2.00
1201752--1201912	64	2.5	64	85	5	209	27	20	18	33	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19