genome.fa.s9586.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009586.1 Hibiscus syriacus cultivar Beakdansim tig00116964_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3773412

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  9  of  19  ( 2170 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1701865--1702395	195	2.7	198	96	1	978	35	15	17	31	1.91
1703854--1703948	6	15.3	6	78	6	73	37	7	33	21	1.81
1703869--1703952	9	9.3	9	78	0	87	36	5	33	23	1.79
1703857--1703948	12	7.9	12	83	7	100	36	7	33	21	1.82
1705533--1705605	23	3.2	23	86	0	92	35	2	20	41	1.67
1705957--1706029	23	3.2	23	88	0	101	34	4	21	39	1.73
1706033--1706069	19	1.9	19	88	0	56	29	13	8	48	1.71
1705333--1706367	424	2.4	427	95	3	1858	42	7	11	38	1.69
1706404--1706896	183	2.7	182	96	1	905	33	15	17	33	1.91
1709363--1709427	25	2.6	25	80	0	85	35	9	13	41	1.77
1709771--1709843	23	3.2	23	88	0	101	34	4	21	39	1.73
1710117--1710166	25	2.0	25	92	0	82	28	8	20	44	1.79
1710841--1710927	39	2.2	39	95	0	156	48	20	13	17	1.81
1711346--1711418	23	3.2	23	88	0	101	34	4	21	39	1.73
1711775--1711847	23	3.2	23	88	0	101	34	4	21	39	1.73
1712145--1712189	22	2.0	22	83	8	56	37	8	13	40	1.76
1712207--1712276	23	3.0	23	91	0	113	34	5	22	37	1.78
1711146--1712630	431	3.5	430	96	0	2708	41	8	11	38	1.72
1721430--1721875	242	1.9	236	86	7	641	29	12	18	40	1.86
1722277--1722323	18	2.7	17	80	6	58	27	23	8	40	1.83
1722882--1722917	18	2.1	18	89	5	56	58	0	2	38	1.13
1723134--1723189	28	2.0	28	100	0	112	42	0	17	39	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1723849--1723884	2	18.0	2	94	0	63	50	2	0	47	1.15
1734055--1734090	2	18.0	2	100	0	72	50	0	50	0	1.00
1735793--1735824	16	2.0	16	93	0	55	71	6	0	21	1.07
1735848--1735906	27	2.3	25	85	11	75	35	3	0	61	1.13
1738294--1738327	17	1.9	18	94	5	61	47	2	0	50	1.16
1738387--1738445	28	2.1	29	87	3	84	44	1	0	54	1.10
1738506--1738541	18	2.0	18	88	0	54	50	0	0	50	1.00
1745390--1745431	21	2.1	20	82	8	50	52	0	2	45	1.13
1747410--1747461	21	2.5	21	81	3	61	38	19	25	17	1.93
1747450--1747563	20	5.7	20	83	6	113	31	25	18	24	1.97
1747447--1747563	61	1.9	61	85	0	162	33	24	17	23	1.97
1748115--1748158	19	2.4	19	84	3	63	52	25	15	6	1.68
1748154--1748351	19	10.1	19	71	17	127	12	22	20	44	1.85
1748159--1748243	39	2.2	38	89	2	125	11	18	20	49	1.78
1748267--1748303	14	2.6	14	91	0	65	10	27	21	40	1.86
1748295--1748351	20	2.9	19	82	7	60	14	22	19	43	1.86
1750407--1750473	21	3.2	21	66	6	55	23	35	19	20	1.95
1750355--1750473	42	2.8	42	81	5	107	22	36	17	23	1.95
1751826--1751861	14	2.6	14	95	0	63	30	0	25	44	1.54
1751977--1752018	20	2.1	20	100	0	84	52	19	19	9	1.72
1752095--1752151	18	3.4	18	76	18	77	14	22	19	43	1.86
1752021--1752146	65	2.0	65	90	4	202	18	22	17	42	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1752025--1752151	32	3.9	32	83	6	150	16	22	18	41	1.90
1754433--1754457	12	2.1	12	100	0	50	0	28	0	72	0.86
1754632--1754685	24	2.2	24	90	0	81	38	20	16	24	1.92
1755742--1755779	20	1.9	20	94	0	67	39	23	21	15	1.92
1755798--1755865	19	3.8	19	83	12	92	14	22	17	45	1.85
1757865--1757956	20	4.8	19	81	5	96	41	20	22	15	1.90
1757923--1757967	18	2.4	18	88	3	63	46	26	17	8	1.78
1757963--1758058	19	5.6	17	72	21	78	11	19	22	45	1.82
1757985--1758042	14	3.9	14	79	16	71	8	17	25	48	1.75
1757968--1758058	32	2.8	33	94	3	166	10	18	23	47	1.80
1758043--1758097	20	2.8	19	83	8	65	16	23	23	36	1.94
1758579--1758623	18	2.5	18	88	0	72	13	15	44	26	1.83
1759848--1759885	20	1.9	20	88	0	58	50	21	15	13	1.78
1760149--1760192	22	2.0	22	95	0	79	18	15	45	20	1.85
1760380--1760493	20	5.7	20	82	6	122	24	18	26	30	1.98
1760360--1760495	41	3.3	41	79	6	159	24	17	25	33	1.97
1760483--1760575	20	4.5	21	78	4	100	17	24	18	39	1.91
1760422--1760556	41	3.3	41	82	4	139	19	21	21	37	1.94
1760483--1760575	41	2.3	41	100	0	186	17	24	18	39	1.91
1762097--1762147	22	2.3	22	84	15	70	50	1	1	45	1.24
1762097--1762142	21	2.1	21	88	11	67	47	2	2	47	1.26
1764332--1764435	45	2.3	45	83	6	122	36	20	20	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1764443--1764499	20	2.6	22	89	8	82	29	21	22	26	1.99
1765648--1765706	30	2.0	29	83	3	73	37	6	22	33	1.80
1765937--1766004	23	3.0	22	78	8	64	19	23	26	30	1.98
1770206--1770278	21	3.4	21	77	5	76	38	19	13	28	1.90
1771986--1772022	18	2.1	18	94	0	65	29	32	16	21	1.95
1773411--1773446	18	2.1	18	89	5	56	13	13	0	72	1.13
1775300--1775422	66	1.9	63	81	9	149	34	20	19	25	1.96
1777592--1777652	31	2.0	31	87	6	88	19	19	22	37	1.94
1783316--1783438	66	1.9	63	83	9	158	34	17	20	26	1.95
1786328--1786379	21	2.4	22	83	6	61	36	1	19	42	1.62
1786562--1786684	31	4.0	31	81	4	158	26	21	21	31	1.98
1788587--1788621	18	1.9	18	88	0	52	25	31	17	25	1.97
1792267--1792315	21	2.3	21	89	0	71	38	18	18	24	1.93
1792741--1792768	3	9.3	3	100	0	56	32	0	0	67	0.91
1792843--1792877	17	2.1	17	88	0	52	34	14	11	40	1.82
1803465--1803511	22	2.1	22	84	7	60	68	0	2	29	1.02
1804027--1804150	64	2.0	63	93	1	212	31	12	17	38	1.87
1806972--1807022	20	2.8	18	80	16	61	52	1	29	15	1.54
1807653--1807808	64	2.4	64	79	8	174	35	19	19	25	1.95
1808159--1808268	29	3.8	29	91	2	177	47	15	20	17	1.83
1808172--1808220	17	3.2	17	67	27	54	44	18	22	14	1.85
1808353--1808386	15	2.3	15	89	0	50	14	17	32	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1814589--1814743	64	2.4	64	79	10	165	34	20	19	25	1.96
1815120--1815229	29	3.8	29	92	2	177	46	15	20	18	1.84
1815314--1815347	15	2.3	15	89	0	50	14	20	29	35	1.93
1817151--1817266	55	2.1	54	87	1	160	28	21	18	31	1.97
1817175--1817290	55	2.1	55	78	9	121	28	21	18	31	1.97
1817261--1817434	59	3.1	57	76	14	209	32	18	14	33	1.91
1818301--1818343	21	2.0	21	95	0	77	27	27	20	23	1.99
1818437--1818466	15	2.0	15	100	0	60	13	26	33	26	1.93
1818452--1818493	21	2.0	21	90	0	66	14	28	35	21	1.92
1818583--1818642	29	2.0	31	90	6	97	41	18	6	33	1.76
1818801--1818847	22	2.1	22	96	0	85	34	2	8	55	1.42
1819899--1819946	19	2.5	20	82	3	62	29	12	6	52	1.63
1820804--1820873	34	2.1	32	86	5	95	21	31	14	32	1.93
1821156--1821198	21	2.0	21	95	0	77	27	27	20	23	1.99
1821234--1821277	21	2.1	21	100	0	88	13	27	45	13	1.81
1821311--1821390	21	4.0	21	76	20	91	12	27	37	22	1.90
1821334--1821363	15	2.0	15	100	0	60	13	26	33	26	1.93
1821312--1821384	37	2.0	37	91	2	121	13	27	35	23	1.92
1821480--1821539	29	2.0	31	90	6	97	41	18	6	33	1.76
1821580--1821788	94	2.2	95	84	0	258	25	22	16	35	1.95
1821753--1821807	20	2.8	20	84	15	78	25	20	16	38	1.92
1823371--1823572	105	1.9	105	86	2	289	25	32	18	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1828655--1828701	7	6.9	7	85	4	60	44	27	0	27	1.55
1828881--1828920	21	1.9	21	84	0	53	25	0	30	45	1.54
1830449--1830772	161	2.0	161	99	0	639	26	29	19	24	1.98
1836042--1836200	81	2.0	81	91	0	255	28	36	13	22	1.91
1836518--1836558	3	13.7	3	89	0	64	34	26	34	4	1.78
1838104--1838611	253	2.0	255	97	2	970	34	19	20	26	1.96
1843234--1843447	110	2.0	107	94	2	374	17	25	28	28	1.97
1843716--1843780	18	3.6	18	97	0	121	24	15	33	26	1.95
1846984--1847058	38	2.0	38	94	5	134	30	29	13	26	1.94
1847107--1847199	14	6.6	14	75	15	84	43	3	2	51	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19