genome.fa.s9623.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009623.1 Hibiscus syriacus cultivar Beakdansim tig00117012_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3488723

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  11  of  18  ( 2083 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1811698--1811777	11	7.7	10	71	17	56	52	3	0	43	1.19
1811691--1811777	31	2.8	30	83	10	104	54	3	0	42	1.17
1811695--1811744	19	2.5	21	84	9	70	56	2	0	42	1.11
1814990--1815058	9	7.3	9	76	9	66	17	27	28	26	1.97
1814987--1815044	29	2.0	30	89	3	91	20	24	29	25	1.99
1815009--1815056	19	2.5	20	90	6	66	18	25	31	25	1.98
1815054--1815109	17	3.3	17	97	0	103	17	46	25	10	1.80
1822132--1822181	10	4.8	11	78	9	52	18	26	24	32	1.97
1822144--1822205	10	6.4	9	80	12	70	16	27	29	27	1.97
1822132--1822200	20	3.4	21	84	13	92	17	26	26	30	1.97
1822144--1822205	19	3.2	19	88	6	81	16	27	29	27	1.97
1822171--1822211	19	2.2	19	95	0	73	19	24	29	26	1.98
1822144--1822213	10	7.3	9	78	10	50	17	28	27	27	1.97
1822209--1822247	17	2.3	17	100	0	78	17	46	23	12	1.83
1825668--1825751	23	3.5	23	74	19	82	52	0	7	40	1.29
1825906--1826002	51	1.9	51	91	0	158	21	31	30	15	1.94
1825984--1826061	40	2.0	40	86	0	111	16	26	38	17	1.92
1826265--1826325	21	3.2	20	69	21	58	34	0	3	62	1.12
1831470--1831530	27	2.2	28	91	2	97	22	21	22	32	1.98
1832295--1832367	29	2.5	29	84	4	94	17	4	36	41	1.69
1832474--1832551	40	2.0	40	92	0	129	19	37	25	17	1.94
1835496--1835526	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1838931--1838976	21	2.2	21	84	0	56	30	30	26	13	1.93
1839000--1839048	22	2.2	22	82	7	64	32	30	28	8	1.86
1839404--1839460	20	2.7	22	78	15	66	43	5	14	36	1.67
1839989--1840237	31	8.0	31	93	0	410	20	18	21	38	1.93
1854321--1854742	212	2.0	210	98	1	810	32	16	20	30	1.95
1859774--1859814	21	2.0	21	85	0	55	29	29	24	17	1.97
1861275--1861712	149	3.0	149	94	4	753	27	18	20	34	1.95
1864720--1864764	21	2.1	21	87	0	63	31	28	24	15	1.96
1866255--1866558	149	2.0	149	99	0	599	27	17	20	34	1.95
1866537--1866581	23	2.0	23	86	0	63	20	24	28	26	1.99
1877046--1877163	32	3.7	32	83	1	148	34	20	16	27	1.95
1877043--1877182	32	4.4	31	75	10	113	35	19	17	27	1.94
1877031--1877182	64	2.4	64	78	5	173	34	19	17	28	1.94
1877335--1877389	28	2.0	28	82	13	69	32	21	7	38	1.81
1881854--1881933	39	2.0	39	83	7	99	3	21	20	55	1.59
1887658--1887755	11	8.5	11	73	10	79	26	25	21	26	1.99
1887657--1887723	24	2.8	24	93	0	107	26	25	25	22	2.00
1887658--1887755	24	4.2	22	85	3	79	26	25	21	26	1.99
1889567--1892188	5	537.8	5	90	9	4146	20	0	20	58	1.39
1892439--1892484	24	2.0	23	86	4	65	45	0	4	50	1.21
1892439--1892486	23	2.1	23	84	7	62	47	0	4	47	1.21
1894944--1894991	25	1.9	25	95	0	87	43	4	4	47	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1896886--1896914	14	2.1	14	100	0	58	48	0	0	51	1.00
1902193--1902237	15	3.1	15	83	3	56	28	2	0	68	1.01
1902186--1902250	28	2.3	28	81	5	78	33	1	1	63	1.13
1905885--1905925	18	2.2	18	86	4	55	70	0	4	24	1.06
1909564--1909660	50	2.0	49	85	6	133	32	20	15	30	1.94
1909623--1909661	20	1.9	21	89	5	62	35	20	15	28	1.93
1910449--1910701	54	4.7	54	84	7	311	32	18	15	34	1.92
1910454--1910704	105	2.4	107	85	6	332	31	18	15	33	1.93
1910755--1910783	15	1.9	15	100	0	58	41	24	6	27	1.80
1911129--1911179	20	2.5	20	78	12	59	25	33	11	29	1.91
1913216--1913354	72	1.9	73	85	5	194	31	0	10	58	1.31
1914025--1914065	16	2.4	18	80	12	50	19	7	2	70	1.22
1914091--1914142	25	2.1	25	82	7	61	21	9	0	69	1.17
1919012--1919038	2	13.5	2	100	0	54	48	0	0	51	1.00
1926487--1926520	16	2.1	17	94	5	61	50	0	0	50	1.00
1928512--1928809	147	2.0	147	97	0	560	41	9	16	32	1.80
1931126--1931196	36	2.0	36	82	0	88	23	18	14	43	1.86
1931174--1931231	29	2.0	29	100	0	116	20	17	17	44	1.86
1945411--1945459	24	2.0	24	84	0	62	38	8	26	26	1.84
1946477--1946507	15	2.1	15	100	0	62	19	19	29	32	1.96
1951168--1951210	17	2.4	18	84	7	52	74	0	4	20	1.00
1952325--1952382	9	6.2	10	84	7	54	63	0	5	31	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1952331--1952382	3	16.7	3	84	7	68	63	0	3	32	1.12
1952455--1952538	30	2.8	29	87	5	123	52	7	1	39	1.37
1952505--1952780	37	7.1	38	75	14	203	44	5	3	47	1.41
1952527--1952761	40	5.9	39	78	12	184	43	5	3	47	1.45
1952567--1952783	81	2.8	77	82	8	244	44	5	3	47	1.41
1953407--1953997	81	7.2	81	75	7	559	24	21	24	29	1.99
1953404--1954039	165	3.9	164	89	0	950	25	21	23	29	1.99
1953407--1954039	329	1.9	329	90	1	1009	24	21	23	29	1.99
1954205--1954265	23	2.7	23	97	2	115	24	22	18	34	1.96
1960333--1960390	9	6.2	10	88	7	63	65	0	5	29	1.14
1960339--1960390	3	16.7	3	88	7	77	65	0	3	30	1.10
1960340--1960396	9	6.5	8	82	17	53	64	0	3	31	1.10
1960331--1960410	34	2.4	34	81	10	85	66	1	3	28	1.17
1960463--1960546	30	2.8	29	87	5	123	52	7	1	39	1.37
1960513--1960766	42	6.6	39	78	12	201	44	5	3	46	1.42
1960518--1960786	79	3.5	77	79	12	243	44	5	2	46	1.40
1961586--1961618	9	3.8	9	84	8	50	0	21	0	78	0.75
1963636--1963813	96	1.9	96	86	2	259	51	15	8	24	1.71
1963882--1963919	12	3.2	12	85	7	51	21	18	21	39	1.93
1965264--1965324	7	8.4	7	77	12	52	24	3	31	40	1.71
1965300--1965328	15	1.9	15	100	0	58	20	0	34	44	1.52
1965399--1965486	7	12.7	7	73	11	65	20	2	36	40	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1965423--1965483	21	2.9	21	86	13	81	22	0	32	44	1.54
1969825--1969977	45	3.4	45	91	0	252	39	17	19	22	1.92
1976826--1976926	44	2.3	45	87	1	168	38	17	21	21	1.93
1976838--1976923	45	1.9	44	97	2	163	39	19	18	22	1.92
1980255--1980295	14	2.9	14	88	0	55	17	21	34	26	1.95
1980734--1980770	18	2.1	18	89	0	56	24	13	35	27	1.93
1984896--1984961	14	4.7	14	70	7	53	31	19	24	24	1.98
1984896--1984961	28	2.4	28	74	7	71	31	19	24	24	1.98
1998331--1998383	13	3.9	13	76	16	54	39	16	24	18	1.91
2001651--2001687	15	2.5	15	95	0	65	8	70	16	5	1.30
2002823--2002892	22	3.2	22	83	4	79	24	11	5	58	1.54
2008664--2008715	26	2.0	26	100	0	104	42	15	7	34	1.75
2012939--2013005	24	2.8	24	73	15	66	50	20	22	5	1.69
2013546--2013570	5	5.0	5	100	0	50	20	60	20	0	1.37
2018265--2018297	16	2.1	16	88	5	50	48	0	6	45	1.27
2026983--2027049	11	6.7	10	85	11	93	14	20	26	37	1.92
2026982--2027049	30	2.3	30	97	0	127	14	20	27	36	1.92
2027044--2027083	17	2.4	17	100	0	80	17	45	22	15	1.85
2028616--2028685	36	1.9	36	91	0	113	42	21	11	24	1.85
2035464--2035522	29	2.0	29	83	9	75	42	5	6	45	1.52
2035475--2035541	29	2.3	31	80	15	79	47	1	2	47	1.26
2039262--2039314	18	2.9	18	94	0	88	18	11	37	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2040487--2040559	17	4.2	17	81	8	85	39	8	16	35	1.78
2040487--2040559	18	4.2	18	80	5	71	39	8	16	35	1.78
2040487--2040559	35	2.1	35	87	5	103	39	8	16	35	1.78
2040659--2040697	20	2.0	20	89	0	60	43	20	5	30	1.73
2042211--2042241	16	1.9	16	93	0	53	48	41	0	9	1.36
2042557--2042608	20	2.5	20	84	3	59	9	3	5	80	0.99
2042909--2042960	18	2.9	18	97	0	95	15	11	40	32	1.83
2044134--2044206	17	4.2	17	81	8	85	39	6	17	35	1.77
2044134--2044206	18	4.2	18	80	5	71	39	6	17	35	1.77
2044134--2044206	35	2.1	35	87	5	103	39	6	17	35	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18