genome.fa.s9623.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009623.1 Hibiscus syriacus cultivar Beakdansim tig00117012_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3488723

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  4  of  18  ( 2083 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
494922--494950	12	2.4	12	100	0	58	24	0	6	68	1.13
503455--503798	43	8.0	42	78	8	266	34	23	15	26	1.95
503551--503801	86	2.9	86	83	3	317	34	23	14	27	1.94
503558--503798	129	1.9	129	89	1	376	33	23	14	28	1.94
507632--507683	19	2.7	19	78	3	59	38	0	5	55	1.24
508859--508898	3	13.0	3	94	5	71	35	0	0	65	0.93
508863--508909	22	2.1	22	84	7	60	42	0	0	57	0.98
509283--509316	17	1.9	18	94	5	61	85	0	14	0	0.60
509620--509645	13	2.0	13	100	0	52	7	30	53	7	1.57
510205--510246	12	3.6	12	81	18	61	28	2	0	69	1.01
510250--510279	2	15.0	2	92	0	51	53	0	0	46	1.00
511094--511148	24	2.3	25	81	12	71	36	1	1	60	1.18
518001--518221	88	2.5	88	88	5	309	30	14	19	36	1.91
519382--519494	54	2.1	55	86	1	156	39	15	22	22	1.91
519871--519925	22	2.5	22	81	0	65	34	10	14	40	1.81
520601--521358	76	10.0	76	94	3	1288	21	21	22	34	1.97
520601--521358	151	5.0	152	94	4	1288	21	21	22	34	1.97
521503--521538	3	12.0	3	100	0	72	33	0	0	66	0.92
521544--521568	2	12.5	2	100	0	50	52	0	0	48	1.00
521929--521962	17	1.9	18	94	5	61	85	0	14	0	0.60
534737--534789	10	5.3	10	73	8	54	24	11	13	50	1.73
534736--534789	20	2.7	20	94	0	90	24	11	14	50	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
538181--538240	21	2.7	22	80	12	61	36	8	25	30	1.85
551301--551459	56	3.0	54	71	11	139	38	10	12	38	1.77
553262--553334	31	2.4	31	83	4	85	30	17	21	30	1.97
553319--553388	31	2.3	31	84	0	95	30	24	14	31	1.94
553960--554017	17	3.4	17	71	21	50	34	1	1	62	1.16
555596--555634	2	19.5	2	100	0	78	48	0	0	51	1.00
559703--559727	13	1.9	13	100	0	50	44	16	8	32	1.76
562527--562578	26	2.0	26	100	0	104	30	0	11	57	1.34
562814--562852	16	2.5	16	87	4	53	38	23	2	35	1.68
563595--563671	27	3.0	27	74	11	72	53	0	2	44	1.14
563580--563671	36	2.5	36	82	8	107	52	0	4	43	1.21
568674--569258	293	2.0	291	96	3	1088	23	15	21	39	1.92
569449--569478	15	2.0	15	100	0	60	13	26	46	13	1.80
582092--582158	33	2.0	34	97	2	127	38	23	14	22	1.92
583369--583643	105	2.7	102	86	7	360	24	17	19	38	1.93
600367--600412	22	2.1	22	100	0	92	47	13	8	30	1.72
603717--604310	183	3.3	182	89	1	917	41	13	17	27	1.86
604048--604097	20	2.5	20	80	0	64	52	14	16	18	1.76
606277--606327	24	2.2	24	86	13	72	49	0	5	45	1.26
606574--606639	18	3.7	18	79	0	69	30	6	45	18	1.73
606677--606707	15	2.1	15	100	0	62	25	0	61	12	1.32
606981--607013	14	2.2	16	89	10	52	51	0	33	15	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
611947--613087	199	5.7	199	86	4	1528	39	14	14	31	1.86
614685--614711	2	13.5	2	100	0	54	48	0	0	51	1.00
615233--615353	37	3.2	37	63	9	98	24	14	16	44	1.85
615192--615353	78	2.1	75	96	3	297	25	13	16	44	1.84
615511--615560	23	2.2	23	88	0	73	30	22	10	38	1.86
615263--615547	135	2.1	135	91	0	462	33	12	12	41	1.82
618594--618647	22	2.6	21	76	5	65	35	12	29	22	1.91
618964--619080	54	2.2	53	89	1	171	31	21	17	29	1.96
625104--625142	2	19.5	2	94	0	69	48	0	2	48	1.15
625879--626202	160	2.0	162	98	1	634	37	14	16	31	1.89
629131--629270	72	2.0	71	98	1	271	30	11	17	40	1.84
638839--638900	21	3.0	21	72	13	56	70	0	17	11	1.15
638848--638923	33	2.3	32	84	8	100	75	0	15	9	1.05
638847--638926	6	12.1	7	76	21	68	73	0	16	10	1.08
639859--640053	104	1.9	105	84	5	270	40	16	20	22	1.92
642112--642614	251	2.0	252	98	1	967	39	9	11	39	1.74
650443--650489	16	2.9	16	83	0	58	19	19	0	61	1.34
657111--657144	2	17.0	2	100	0	68	50	0	0	50	1.00
659358--659414	23	2.3	26	77	19	61	61	3	1	33	1.23
659366--659409	12	3.8	12	82	11	56	63	2	0	34	1.07
659496--659523	14	2.0	14	100	0	56	42	7	7	42	1.59
659431--659546	37	3.1	38	72	17	89	44	9	3	42	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
659548--659614	2	35.0	2	77	14	61	44	1	1	52	1.19
666119--666163	6	7.5	6	82	0	54	75	0	4	20	0.97
668372--668420	24	2.0	24	96	0	89	34	12	10	42	1.76
671611--671659	23	2.0	25	85	14	68	61	4	0	34	1.15
671611--671654	12	3.8	12	82	11	56	63	2	0	34	1.07
671755--671901	24	5.6	24	71	23	109	45	8	4	40	1.56
671778--671877	30	3.5	30	74	20	124	48	10	4	38	1.56
671755--671920	54	3.1	54	94	0	287	45	9	4	40	1.56
671868--671943	37	2.0	38	87	7	111	43	13	2	40	1.57
671905--671974	22	3.1	22	77	18	81	44	11	1	42	1.49
673296--673329	14	2.4	14	95	0	59	61	14	8	14	1.55
675879--675968	38	2.4	38	92	3	146	10	10	40	40	1.72
675718--676071	192	1.9	181	87	6	519	24	11	27	36	1.90
676096--676169	38	1.9	38	91	5	123	14	12	32	40	1.83
676096--676189	38	2.4	37	83	16	109	13	12	34	39	1.83
676765--676804	18	2.3	18	87	8	57	32	32	2	32	1.71
676760--676804	18	2.7	16	82	6	54	31	28	4	35	1.77
676949--677103	3	49.7	3	70	10	87	56	5	3	33	1.41
682884--682914	14	2.2	14	100	0	62	22	35	16	25	1.94
684804--684832	12	2.5	12	94	5	51	41	0	0	58	0.98
684810--684863	15	3.9	14	80	20	51	46	0	0	53	1.00
684831--684856	12	2.2	12	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
691547--691635	39	2.2	40	84	9	119	39	14	17	28	1.89
692872--692961	20	4.5	20	95	0	153	20	22	23	34	1.97
692872--692985	60	1.9	60	83	0	147	21	21	21	35	1.96
692873--692998	60	2.1	60	81	0	144	21	18	22	38	1.94
693156--693359	90	2.3	90	81	5	229	37	15	23	23	1.93
693423--693542	47	2.6	47	89	2	170	33	20	20	25	1.97
701843--702106	88	3.0	87	89	2	402	43	10	10	34	1.75
719229--719283	24	2.3	23	80	17	60	45	1	3	49	1.30
719235--719282	24	2.0	25	84	12	64	45	2	4	47	1.33
719366--719417	20	2.6	21	78	9	63	25	32	15	26	1.95
719427--719473	21	2.2	21	88	0	76	21	23	17	38	1.93
719464--719568	20	5.2	20	92	0	165	39	22	18	20	1.93
719699--719746	22	2.2	22	92	0	78	20	41	14	22	1.89
720035--720117	20	4.2	20	84	1	114	12	16	20	50	1.77
721248--721309	7	8.7	7	76	16	65	85	11	3	0	0.71
721248--721309	24	2.5	25	86	5	81	85	11	3	0	0.71
721248--721316	19	3.2	22	74	16	72	82	13	4	0	0.81
725047--725117	36	2.0	36	97	2	135	33	21	22	22	1.97
726610--726938	164	2.0	164	99	0	649	25	19	18	37	1.94
734369--734404	19	1.9	19	88	5	56	2	8	5	83	0.89
734369--734404	18	2.0	18	88	0	54	2	8	5	83	0.89
734386--734415	11	2.7	11	100	0	60	0	13	6	80	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
735560--735611	22	2.7	18	81	18	68	84	11	3	0	0.74
740266--740320	7	7.0	8	80	15	62	85	10	3	0	0.72
740267--740320	10	5.5	10	80	8	58	87	9	3	0	0.67
740267--740309	18	2.4	18	88	0	59	88	6	4	0	0.63
740267--740327	10	6.3	10	79	5	54	83	11	4	0	0.79
744833--744880	25	1.9	25	83	8	62	85	10	4	0	0.73
744833--744880	10	4.3	10	82	17	51	85	10	4	0	0.73
748464--748513	21	2.4	21	86	0	73	18	18	32	32	1.94
748737--748776	16	2.5	16	79	0	53	32	2	2	62	1.22
748916--748981	21	3.1	21	79	12	73	27	34	15	22	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18