Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009623.1 Hibiscus syriacus cultivar Beakdansim tig00117012_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3488723

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  18  of  18  ( 2083 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3387655--3387718
27
2.4
27
91
0
110
26
26
25
21
2.00
3388970--3388999
14
2.1
14
93
0
51
13
16
13
56
1.67
3389219--3389307
23
3.8
23
82
2
97
13
11
16
58
1.63
3389312--3389353
14
3.0
14
92
0
57
7
14
16
61
1.53
3399510--3399564
7
8.0
7
81
2
67
10
23
3
61
1.44
3399514--3399564
21
2.4
21
100
0
102
9
23
3
62
1.42
3402152--3402179
14
2.0
14
100
0
56
14
35
21
28
1.92
3402959--3403071
8
15.2
8
79
17
120
81
0
9
8
0.88
3402979--3403080
1
102.0
1
76
0
69
85
0
7
6
0.75
3402959--3403071
15
8.1
14
78
17
96
81
0
9
8
0.88
3402959--3403070
22
5.1
21
82
11
109
81
0
9
8
0.88
3402963--3403074
36
3.1
34
84
7
134
83
0
8
8
0.83
3403981--3404666
105
6.6
105
92
3
1061
36
19
22
21
1.96
3403981--3404666
206
3.3
209
90
4
1075
36
19
22
21
1.96
3410687--3410717
2
16.0
2
93
6
55
48
0
0
51
1.00
3412136--3412175
21
1.9
21
90
10
64
25
5
0
70
1.08
3412130--3412203
8
8.8
8
74
14
51
22
6
0
70
1.11
3413165--3413198
17
2.0
17
88
11
52
20
14
0
64
1.28
3416047--3416287
95
2.7
95
84
10
319
30
19
19
30
1.96
3417419--3419141
247
7.0
244
82
4
1696
30
23
19
25
1.98
3417378--3419143
327
5.4
326
81
5
1870
30
23
19
25
1.98
3417401--3419140
410
4.2
410
82
4
1857
30
23
19
25
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3417379--3419140
657
2.7
655
85
1
2312
30
23
19
25
1.98
3420985--3421028
13
3.5
12
82
17
54
22
2
2
72
1.07
3425701--3426179
131
3.7
130
87
1
640
32
10
17
40
1.83
3427032--3427122
2
46.0
2
97
2
175
50
0
0
49
1.00
3435421--3435495
35
2.1
35
92
0
123
44
18
1
36
1.59
3436048--3436094
21
2.3
21
88
3
69
25
10
21
42
1.85
3439164--3439205
17
2.3
18
80
8
50
69
2
26
2
1.13
3443805--3444514
259
2.8
245
82
8
762
33
17
15
33
1.91
3446979--3447016
14
2.6
15
83
8
51
57
2
28
10
1.45
3448592--3450117
784
1.9
790
86
5
2147
36
15
15
32
1.89
3454938--3455066
32
4.1
30
83
7
141
24
16
24
34
1.95
3454940--3455061
63
1.9
64
85
5
167
25
17
22
35
1.95
3462799--3462858
21
2.7
22
85
10
70
23
36
23
16
1.94
3469607--3469719
32
3.6
31
80
5
129
24
18
20
36
1.95
3470384--3470423
16
2.4
16
95
4
71
32
15
15
37
1.88
3475911--3475989
24
3.3
24
68
10
72
46
15
6
31
1.70
3483498--3483554
30
1.9
30
100
0
114
50
19
0
29
1.47
3483498--3483567
34
2.2
34
90
10
103
50
20
0
30
1.49
3485099--3485183
21
3.9
21
69
22
59
20
5
0
74
1.03
3485099--3485135
11
3.5
11
96
3
67
16
0
0
83
0.64
3486032--3486078
23
2.0
23
100
0
94
29
10
46
12
1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18

The End!