genome.fa.s133.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold133
Parameters: 2 7 7 80 10 50 1000
Length:  2564099

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  14  of  17  ( 1989 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1911685--1912549	34	25.9	33	79	13	755	20	32	13	33	1.91
1911844--1911896	27	2.0	27	92	0	88	22	33	16	26	1.96
1911717--1912549	71	12.4	69	83	10	820	20	33	12	33	1.91
1911874--1912570	168	4.1	170	85	8	786	20	34	12	32	1.90
1911750--1912570	239	3.5	234	83	11	972	20	33	12	32	1.90
1912552--1912692	34	4.2	34	91	0	232	28	35	17	19	1.94
1912692--1913066	49	7.7	49	87	4	521	25	26	18	29	1.98
1912885--1913022	43	3.1	43	90	5	195	25	27	18	28	1.98
1912976--1913114	52	2.6	52	81	4	152	25	25	15	33	1.95
1913880--1913904	13	1.9	13	100	0	50	36	16	16	32	1.90
1913860--1913926	33	2.0	33	88	0	98	32	11	14	40	1.83
1913967--1913991	13	1.9	13	100	0	50	32	16	16	36	1.90
1914000--1914127	52	2.5	52	94	3	224	33	17	17	30	1.94
1918233--1918575	51	6.6	50	69	16	200	31	12	26	29	1.93
1918444--1918576	52	2.6	51	83	3	167	30	11	26	31	1.91
1926154--1926215	31	2.0	31	96	0	115	38	17	16	27	1.91
1929312--1930040	74	10.0	75	73	9	458	24	19	14	41	1.89
1929312--1929789	219	2.2	220	78	7	470	24	18	14	42	1.87
1935467--1935990	58	9.1	58	76	4	396	25	12	14	47	1.79
1935475--1935988	116	4.5	116	81	4	531	25	12	14	48	1.78
1935657--1935984	171	1.9	172	81	3	401	25	11	14	48	1.77
1939983--1940013	16	2.0	15	93	6	53	64	0	3	32	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1940040--1940064	13	1.9	13	100	0	50	40	0	0	60	0.97
1941112--1941191	32	2.5	33	87	2	117	27	13	17	41	1.87
1941162--1941186	13	1.9	13	100	0	50	32	8	16	44	1.76
1943082--1943107	13	2.0	13	100	0	52	38	15	15	30	1.88
1943064--1943128	32	2.0	32	87	6	94	40	18	13	27	1.89
1946257--1946281	13	1.9	13	100	0	50	32	16	16	36	1.90
1946237--1946301	33	2.0	32	85	11	87	32	16	15	35	1.91
1946999--1947052	27	2.0	28	96	3	101	38	20	7	33	1.80
1948753--1948792	22	1.9	22	90	10	66	42	2	25	30	1.68
1948753--1948802	22	2.4	22	83	9	61	44	2	24	30	1.65
1954862--1954919	19	3.0	20	85	7	84	34	17	15	32	1.91
1954903--1954927	13	1.9	13	100	0	50	32	16	16	36	1.90
1954884--1954948	33	2.0	32	88	8	96	38	15	15	30	1.88
1960468--1960666	99	2.0	99	97	0	371	45	8	10	35	1.68
1960889--1960944	19	2.9	19	89	2	85	28	17	16	37	1.91
1960973--1961011	13	3.0	13	96	0	69	33	15	12	38	1.85
1968464--1968514	17	2.9	18	80	11	61	39	0	9	50	1.35
1968580--1968958	188	2.0	188	95	0	677	36	13	20	29	1.90
1971112--1971180	33	2.1	33	83	5	86	33	15	13	37	1.86
1971209--1971264	19	2.9	19	91	2	85	35	17	16	30	1.92
1971249--1971275	13	2.1	13	100	0	54	40	14	14	29	1.86
1971876--1971917	22	1.9	23	90	9	70	19	33	4	42	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1979960--1980009	20	2.5	20	90	0	73	32	20	12	36	1.89
1980040--1980092	17	2.9	18	83	8	54	35	11	16	35	1.85
1980076--1980100	13	1.9	13	100	0	50	40	0	16	44	1.47
1981401--1981474	29	2.6	29	82	0	85	37	20	10	31	1.87
1985181--1985235	20	2.8	20	77	0	65	40	14	12	32	1.84
1990119--1990152	17	2.0	17	100	0	68	11	17	17	52	1.73
1992695--1992931	131	1.8	131	82	2	307	29	23	11	35	1.90
1993389--1993421	15	2.1	16	88	5	50	84	3	12	0	0.72
1998322--1998371	18	2.7	18	81	9	57	64	2	0	34	1.05
1999369--1999540	85	2.0	86	84	4	224	20	13	18	47	1.82
2005339--2005366	2	14.0	2	100	0	56	50	0	0	50	1.00
2006444--2006486	19	2.3	19	83	0	50	44	27	6	20	1.77
2007308--2007398	32	2.8	33	76	14	107	29	25	14	30	1.95
2007303--2007398	36	2.9	33	80	11	117	29	26	13	31	1.94
2007855--2007881	13	2.1	13	100	0	54	33	22	14	29	1.94
2011336--2011391	21	2.7	21	81	15	71	21	25	1	51	1.57
2018256--2018318	1	63.0	1	74	0	54	87	9	3	0	0.65
2018255--2018318	14	4.8	13	81	12	76	85	10	3	0	0.69
2019557--2020076	28	17.7	28	83	10	560	30	30	17	21	1.96
2019557--2020115	60	9.5	58	83	9	600	30	30	16	22	1.96
2019557--2020112	116	4.7	117	83	7	612	30	30	16	22	1.96
2020978--2021051	20	3.7	20	75	0	85	33	12	10	43	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2028950--2029011	16	3.7	17	77	16	67	48	0	0	51	1.00
2028900--2028987	28	3.2	28	77	13	85	42	0	2	55	1.12
2028971--2029021	14	3.4	14	78	19	57	50	0	0	49	1.00
2028948--2029037	32	2.7	33	84	6	119	46	0	0	53	1.00
2028948--2029031	18	5.0	18	72	15	54	47	0	0	52	1.00
2028961--2029015	14	3.4	16	79	20	69	45	0	0	54	0.99
2032463--2032492	2	15.0	2	100	0	60	50	0	50	0	1.00
2033281--2033557	78	3.5	77	81	5	288	49	3	10	36	1.53
2034294--2034339	17	2.7	18	86	6	60	76	2	0	21	0.90
2034297--2034339	22	2.0	22	85	0	59	76	2	0	20	0.89
2034405--2034458	19	2.8	19	83	8	74	57	0	0	42	0.98
2034436--2034507	32	2.3	31	83	11	92	55	0	0	44	0.99
2035547--2035628	44	1.9	41	83	14	103	47	6	0	46	1.27
2037082--2037113	15	2.1	15	100	0	64	40	6	0	53	1.26
2037085--2037124	15	2.7	15	88	7	55	42	7	2	47	1.45
2039170--2039239	20	3.5	20	76	3	86	35	11	20	32	1.88
2039188--2039260	21	3.5	21	77	3	94	41	8	19	31	1.81
2039170--2039263	41	2.3	41	100	0	188	38	10	19	31	1.86
2039302--2039327	13	2.0	13	100	0	52	38	15	15	30	1.88
2045243--2045300	2	29.0	2	89	0	89	44	0	3	51	1.18
2048087--2048186	49	2.0	49	94	0	173	47	3	23	27	1.66
2049999--2050049	16	3.2	16	77	5	50	50	5	1	41	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2050442--2050477	18	2.2	18	85	14	51	41	0	2	55	1.14
2050643--2050677	3	11.7	3	100	0	70	65	0	0	34	0.93
2051286--2051328	19	2.3	19	84	11	54	25	2	0	72	0.97
2052358--2052413	18	3.1	18	71	7	51	14	5	10	69	1.34
2052880--2052987	51	2.1	51	98	0	207	46	5	4	43	1.47
2053678--2053719	18	2.6	16	79	17	50	33	4	0	61	1.17
2053682--2053717	18	2.0	18	94	0	63	36	5	0	58	1.22
2053714--2053766	21	2.5	23	82	14	69	56	1	0	41	1.10
2053713--2053772	24	2.6	25	76	17	74	56	1	0	41	1.09
2053824--2053889	19	3.6	19	78	19	61	33	3	0	63	1.10
2053858--2053917	28	2.1	28	82	11	70	40	0	0	60	0.97
2053849--2053920	13	4.8	15	79	20	64	41	0	0	58	0.98
2054157--2054188	12	2.4	14	90	10	50	53	3	0	43	1.16
2054170--2054211	21	2.0	22	85	4	59	61	0	0	38	0.96
2055435--2055477	3	14.3	3	100	0	86	34	0	0	65	0.93
2055937--2056023	28	3.0	28	71	20	79	59	0	0	40	0.97
2055927--2056014	10	9.1	10	70	16	60	61	0	0	38	0.96
2057372--2057435	28	2.4	27	80	10	69	39	1	0	59	1.07
2057387--2057439	28	2.0	28	85	7	74	33	1	0	64	1.05
2057396--2057448	26	2.0	28	82	14	67	33	1	0	64	1.05
2059851--2059890	21	2.0	21	85	5	55	47	5	2	45	1.38
2059872--2059904	16	2.0	17	94	5	59	54	6	0	39	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2062685--2062751	37	1.9	34	85	11	91	29	23	11	34	1.91
2063221--2063259	13	3.0	13	84	0	60	35	15	15	33	1.89
2063330--2063385	21	2.6	22	91	5	96	37	10	23	28	1.88
2063454--2063554	53	1.9	53	93	0	175	28	20	18	31	1.97
2063561--2063615	21	2.7	20	80	5	65	30	14	16	38	1.89
2064835--2064870	18	2.0	18	88	0	54	33	0	0	66	0.92
2070459--2070691	97	2.4	97	77	5	249	33	12	24	30	1.92
2072843--2072905	32	1.9	33	87	9	94	30	15	12	41	1.85
2072870--2072926	19	2.9	19	86	2	78	33	17	14	35	1.90
2076160--2076204	20	2.2	20	84	0	54	33	13	8	44	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17