genome.fa.s133.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold133
Parameters: 2 7 7 80 10 50 1000
Length:  2564099

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  13  of  17  ( 1989 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1743711--1743820	50	2.2	50	91	0	184	29	20	17	33	1.95
1745026--1745093	31	2.2	31	94	0	118	20	14	25	39	1.91
1745763--1745876	20	5.7	20	91	6	162	27	16	14	42	1.86
1748201--1748312	51	2.2	51	82	3	145	30	23	11	34	1.90
1748334--1748401	28	2.5	28	88	11	97	25	30	16	27	1.96
1748437--1748505	28	2.4	29	81	13	90	23	24	23	28	1.99
1748280--1748587	107	2.9	105	76	10	286	28	25	14	31	1.95
1748467--1748761	79	3.7	79	88	1	396	28	24	12	33	1.92
1748462--1748797	79	4.3	79	86	2	392	28	25	13	33	1.93
1748732--1749057	51	6.3	51	74	13	218	26	27	13	31	1.94
1748827--1748904	28	2.8	28	82	7	97	21	30	21	25	1.98
1748699--1749006	158	2.0	157	84	1	411	26	26	14	31	1.95
1761432--1761496	1	65.0	1	75	0	58	87	7	3	1	0.70
1761432--1761496	19	3.4	18	83	10	76	87	7	3	1	0.70
1762520--1762610	29	3.2	29	64	14	82	28	28	19	23	1.98
1762495--1762978	55	8.6	55	80	7	452	26	25	20	26	1.99
1762497--1762846	167	2.1	165	86	3	479	28	26	21	24	1.99
1762744--1762829	28	3.1	28	64	20	72	27	24	18	29	1.98
1762976--1763141	42	3.9	42	77	11	158	17	26	14	41	1.88
1763909--1763950	20	2.1	20	90	0	66	26	16	11	45	1.82
1766264--1766428	51	3.2	51	80	6	174	28	24	13	33	1.93
1766368--1766678	107	2.9	107	76	6	326	28	25	13	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1766551--1766804	79	3.2	77	83	5	330	28	25	13	31	1.94
1766740--1767067	51	6.3	51	72	12	229	27	25	13	32	1.93
1766836--1766914	28	2.8	28	82	3	88	20	27	21	30	1.98
1766522--1767013	158	3.1	156	76	10	498	28	26	13	31	1.93
1768667--1768722	19	2.8	20	83	8	69	35	14	16	33	1.88
1776767--1776805	19	2.1	19	90	4	62	56	2	28	12	1.50
1776801--1776875	35	2.1	37	87	5	109	33	2	34	29	1.72
1777146--1777184	19	1.9	19	85	10	51	53	12	12	20	1.71
1777424--1777475	21	2.6	21	87	6	72	34	15	17	32	1.91
1777391--1777453	32	1.9	33	87	3	92	30	17	14	38	1.89
1783246--1783280	15	2.3	15	90	0	52	28	2	2	65	1.21
1785030--1785584	153	3.6	152	82	5	636	33	10	7	48	1.66
1786916--1787476	165	3.4	163	76	7	526	31	6	16	45	1.73
1786916--1787312	164	2.4	164	81	6	469	30	6	16	46	1.72
1787865--1788220	160	2.3	158	81	5	409	27	12	20	39	1.89
1792753--1793256	88	5.7	88	76	4	327	24	18	14	42	1.87
1793773--1793994	40	5.5	40	71	6	160	18	23	15	42	1.88
1793718--1794061	81	4.3	81	80	4	329	19	21	14	44	1.87
1793848--1793967	41	3.0	40	77	2	141	17	25	15	41	1.88
1793718--1794004	40	7.1	40	70	9	147	18	22	14	44	1.86
1793717--1794100	162	2.4	162	77	7	377	19	22	14	43	1.87
1793718--1794142	81	5.2	81	79	6	326	19	22	14	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1794087--1794197	55	2.0	56	98	1	215	23	18	16	42	1.89
1794175--1794326	81	1.9	81	82	5	191	19	19	12	48	1.81
1794632--1794670	20	2.0	19	95	5	69	35	23	10	30	1.88
1794680--1794704	13	1.9	13	100	0	50	32	16	16	36	1.90
1794692--1794744	20	2.6	21	82	8	65	37	16	16	28	1.91
1800772--1800802	8	3.8	8	95	4	53	12	0	25	61	1.32
1800955--1800988	13	2.6	13	90	0	50	32	8	14	44	1.76
1801431--1801475	20	2.1	21	84	8	56	17	46	28	6	1.73
1803699--1803737	13	3.0	13	96	0	69	35	15	17	30	1.91
1809896--1809921	13	2.0	13	100	0	52	30	15	15	38	1.88
1822131--1822191	1	61.0	1	80	0	68	90	6	1	1	0.59
1822132--1822182	15	3.4	15	91	5	77	90	7	0	1	0.53
1822131--1822208	11	7.0	11	80	11	70	85	5	7	1	0.77
1823298--1824250	115	8.0	114	82	10	1040	26	27	19	26	1.99
1823298--1824250	61	16.1	60	80	9	955	26	27	19	26	1.99
1823311--1824250	360	2.7	355	85	6	1236	26	27	19	26	1.99
1824257--1824412	45	3.5	45	76	7	167	21	26	11	40	1.87
1824223--1824415	46	4.5	44	76	10	179	20	29	11	38	1.88
1825563--1825770	79	2.6	79	76	6	181	33	12	25	28	1.92
1825723--1825841	51	2.3	51	81	2	150	29	11	29	29	1.92
1825825--1825897	28	2.6	28	80	8	87	27	16	30	26	1.97
1827060--1827124	33	2.0	33	85	11	89	32	16	15	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1827899--1827932	18	1.9	18	88	5	52	58	11	17	11	1.62
1835412--1835465	20	2.7	20	77	11	58	37	16	12	33	1.87
1835494--1835549	19	2.9	19	89	2	76	35	14	17	32	1.90
1835515--1835577	32	1.9	33	87	9	94	41	12	15	30	1.85
1837301--1837340	19	2.1	19	86	9	55	70	0	2	27	1.01
1837558--1837686	68	1.9	68	95	3	233	26	27	24	21	1.99
1850897--1850950	20	2.7	20	85	0	72	31	11	12	44	1.78
1850995--1851019	13	1.9	13	100	0	50	32	16	16	36	1.90
1851028--1851148	52	2.3	52	97	0	224	34	18	18	28	1.94
1854223--1854364	52	2.7	52	98	0	275	28	18	19	34	1.95
1854373--1854397	13	1.9	13	100	0	50	36	16	16	32	1.90
1854438--1854504	33	2.0	33	88	0	98	40	14	11	32	1.83
1854460--1854484	13	1.9	13	100	0	50	32	16	16	36	1.90
1856973--1856998	13	2.0	13	100	0	52	38	15	15	30	1.88
1860699--1860749	22	2.3	23	82	3	59	54	5	1	37	1.36
1861284--1861340	17	3.5	17	76	7	55	1	21	0	77	0.86
1864544--1864575	2	16.0	2	100	0	64	50	0	0	50	1.00
1865802--1865850	4	12.2	4	91	0	62	42	0	6	51	1.27
1865802--1865850	6	8.2	6	86	0	62	42	0	6	51	1.27
1866114--1866169	22	2.7	21	72	20	55	66	1	5	26	1.23
1866445--1866547	26	4.2	24	73	16	86	14	1	3	79	0.96
1866439--1866505	22	3.2	20	80	16	64	11	0	7	80	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1866439--1866546	5	21.8	5	76	13	75	14	1	4	78	0.99
1866445--1866545	36	2.8	34	80	14	105	14	1	3	79	0.97
1870329--1870421	33	2.9	33	80	9	97	49	1	1	48	1.15
1870632--1870700	30	2.6	24	70	25	57	49	0	0	50	1.00
1871209--1871248	19	2.1	19	100	0	80	27	0	15	57	1.38
1871561--1871641	25	3.2	25	70	16	85	32	12	12	43	1.79
1872154--1872208	9	5.6	10	74	18	53	32	1	0	65	1.03
1873971--1874013	22	2.0	22	86	9	61	58	2	9	30	1.42
1874276--1874323	12	4.1	12	84	10	64	72	2	0	25	0.95
1874416--1874470	29	1.9	29	92	3	94	67	9	3	20	1.34
1874568--1874624	16	3.5	16	76	7	53	3	24	0	71	1.01
1875165--1875195	16	2.0	16	93	6	55	29	0	0	70	0.87
1875475--1875524	26	2.0	26	84	7	68	56	2	0	42	1.11
1886076--1886417	51	6.6	51	70	13	169	31	12	26	29	1.93
1886282--1886418	52	2.6	51	80	7	168	32	11	27	29	1.92
1888818--1888913	19	5.7	19	68	26	90	35	20	10	33	1.87
1888810--1888912	32	3.2	32	98	0	197	34	21	10	33	1.88
1889608--1889697	42	2.1	41	76	9	92	38	14	28	17	1.89
1889681--1890630	55	16.4	56	83	9	1057	22	20	29	26	1.99
1890544--1890728	100	1.9	100	88	2	282	27	17	29	25	1.98
1891682--1891770	9	10.8	8	73	21	60	1	4	10	84	0.82
1891682--1891766	17	4.9	16	80	13	89	1	4	9	84	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1891683--1891760	28	2.8	27	84	3	84	1	5	7	85	0.77
1891682--1891760	20	4.0	19	82	8	77	1	5	7	86	0.77
1891702--1891769	34	2.0	35	91	8	113	1	1	11	85	0.74
1891682--1891769	11	8.3	10	73	15	54	1	4	9	85	0.79
1891682--1891760	1	79.0	1	71	0	59	1	5	7	86	0.77
1903272--1903296	13	1.9	13	100	0	50	36	16	16	32	1.90
1903252--1903318	33	2.0	33	88	0	98	32	11	14	40	1.83
1903359--1903383	13	1.9	13	100	0	50	32	16	16	36	1.90
1903392--1903519	52	2.5	52	94	3	224	33	17	17	30	1.94
1910724--1910759	18	2.0	18	88	0	54	88	0	8	2	0.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17